software/JAcoustics/JKatoomba.sh

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#!/bin/zsh
script=${0##*/}
 
if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi
 
source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null
 
set_variable:  DEBUG         ACOUSTICS_DEBUG       2
set_variable:  WORKDIR       ACOUSTICS_WORKDIR     ./
set_variable+  HYDROPHONE    ACOUSTICS_HYDROPHONE  -H $WORKDIR/hydrophone.txt
set_variable+  TRANSMITTER   ACOUSTICS_TRANSMITTER -Y $WORKDIR/transmitter.txt
set_variable+  STRIP         ACOUSTICS_STRIP       -C -JEvent
set_variable+  SQUASH        ACOUSTICS_SQUASH      -q
 
if do_usage $*; then
    usage "$script <detector file> (input file)+ <output file>"\
          "\nAuxiliary script to process acoustic data for dynamic position calibration."\
          "\nInput files correspond to the output of JAcousticsEventBuilder[.sh]."
fi
 
if (( $# < 3 )); then
    fatal "Wrong number of arguments."
fi
 
set_variable  DETECTOR            $argv[1]
set_array     INPUT_FILES         $argv[2,-2]
set_variable  OUTPUT_FILE         $argv[-1]
 
eval `JPrintDetector -a $DETECTOR -O IDENTIFIER`
 
JAcoustics.sh   $DETECTOR_ID
 
CHECK_EXIT_CODE
 
timer_start
 
JKatoomba \
    -a $DETECTOR                              \
    -f "$INPUT_FILES[*]"                      \
    -o $OUTPUT_FILE                           \
    -T $WORKDIR/tripod.txt                    \
    ${TRANSMITTER}                            \
    -V $WORKDIR/sound_velocity.txt            \
    -M $WORKDIR/mechanics.txt                 \
    -@ $WORKDIR/acoustics_fit_parameters.txt  \
    -! $WORKDIR/disable.txt                   \
    ${HYDROPHONE}                             \
    $STRIP                                    \
    $SQUASH                                   \
    -d $DEBUG --!
 
timer_stop
timer_print