1#ifndef __JCALIBRATE_JFITK40__
2#define __JCALIBRATE_JFITK40__
42 using KM3NETDAQ::NUMBER_OF_PMTS;
106 public std::map<pair_type, std::vector<rate_type> >
114 public JMath<JParameter_t>
328 const double x =
get();
341 const double x =
get();
408 operator double()
const
437 return in >>
object.value;
452 out <<
FIXED(12,6) <<
object.get() <<
' '
453 << setw(5) << (
object.isFixed() ?
"fixed" :
" ") <<
' ';
456 out <<
"[" <<
FIXED(12,6) <<
object.range.getLowerLimit() <<
"," <<
FIXED(12,6) <<
object.range.getUpperLimit() <<
"]";
500 parameters.
QE .
set(1.0);
502 parameters.
t0 .
set(0.0);
503 parameters.
bg .
set(0.0);
530 if (
QE .isFree()) {
QE .
set(parameters.
QE); }
532 if (
t0 .isFree()) {
t0 .
set(parameters.
t0); }
533 if (
bg .isFree()) {
bg .
set(parameters.
bg); }
544 return ((
QE. isFree() ? 1 : 0) +
590 out <<
"QE " <<
FIXED(7,3) <<
object.QE << endl;
591 out <<
"TTS " <<
FIXED(7,3) <<
object.TTS << endl;
592 out <<
"t0 " <<
FIXED(7,3) <<
object.t0 << endl;
593 out <<
"bg " <<
FIXED(7,3) <<
object.bg << endl;
666 out <<
"JFitK40.hh" << endl;
667 out <<
"parameters.R .set(" <<
FIXED(9,6) << this->
R () <<
");" << endl;
668 out <<
"parameters.p1.set(" <<
FIXED(9,6) << this->
p1() <<
");" << endl;
669 out <<
"parameters.p2.set(" <<
FIXED(9,6) << this->
p2() <<
");" << endl;
670 out <<
"parameters.p3.set(" <<
FIXED(9,6) << this->
p3() <<
");" << endl;
671 out <<
"parameters.p4.set(" <<
FIXED(9,6) << this->
p4() <<
");" << endl;
672 out <<
"cc " <<
FIXED(9,6) << this->
cc() << endl;
673 out <<
"bc " <<
FIXED(9,6) << this->
bc() << endl;
676 out <<
"JK40DefaultSimulator.hh" << endl;
677 out <<
"static constexpr double p1 = " <<
FIXED(9,6) << this->
p1() <<
";" << endl;
678 out <<
"static constexpr double p2 = " <<
FIXED(9,6) << this->
p2() <<
";" << endl;
679 out <<
"static constexpr double p3 = " <<
FIXED(9,6) << this->
p3() <<
";" << endl;
680 out <<
"static constexpr double p4 = " <<
FIXED(9,6) << this->
p4() <<
";" << endl;
696 out <<
"Rate [Hz] " <<
FIXED(12,6) <<
object.R << endl;
697 out <<
"p1 " <<
FIXED(12,6) <<
object.p1 << endl;
698 out <<
"p2 " <<
FIXED(12,6) <<
object.p2 << endl;
699 out <<
"p3 " <<
FIXED(12,6) <<
object.p3 << endl;
700 out <<
"p4 " <<
FIXED(12,6) <<
object.p4 << endl;
701 out <<
"cc " <<
FIXED(12,6) <<
object.cc << endl;
702 out <<
"bc " <<
FIXED(12,6) <<
object.bc << endl;
743 parameters.
R .
set(18.473257);
744 parameters.
p1.
set( 3.030307);
745 parameters.
p2.
set(-0.965429);
746 parameters.
p3.
set( 1.290367);
747 parameters.
p4.
set( 0.405618);
748 parameters.
cc.
set( 0.0);
749 parameters.
bc.
set( 0.0);
762 return ((
R .isFree() ? 1 : 0) +
780 if (!(this->*p).isFree()) {
821 const double ct2 = ct * ct;
859 out << static_cast<const JK40Parameters&>(
object);
861 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
862 out <<
"PMT[" <<
FILL(2,
'0') << i <<
FILL() <<
"]." <<
object.parameters[i].status << endl <<
object.parameters[i];
922 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
926 for (JTDC_t::const_iterator i = TDC.first; i != TDC.second; ++i) {
930 this->parameters[i->second].t0.fix();
934 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
935 this->parameters[i].t0.fix();
959 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
993 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
1003 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
1027 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
1041 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
1079 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
1108 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
1134 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
1175 pair.second == this->index ? +this->parameters[
pair.first ].t0() :
1176 this->parameters[
pair.first].t0() - this->parameters[
pair.second].t0());
1179 this->parameters[
pair.second].TTS() * this->parameters[
pair.second].TTS() +
1180 this->getSigmaK40() * this->getSigmaK40());
1189 const double z1 = (*this)[
pair.first ].getDirection().getDZ();
1190 const double z2 = (*this)[
pair.second].getDirection().getDZ();
1194 signbit(z1) != signbit(z2)) {
1212 using namespace std;
1213 using namespace JPP;
1220 const double R2 = bell.
getValue(dt_ns);
1235 using namespace std;
1237 out <<
"Module " << setw(10) <<
object.getID() << endl;
1238 out <<
"option " <<
object.option << endl;
1239 out <<
"index " <<
object.index << endl;
1241 out << static_cast<const JModel_t&>(
object);
1280 using namespace JPP;
1294 using namespace std;
1295 using namespace JPP;
1306 double xmax = numeric_limits<double>::lowest();
1307 double xmin = numeric_limits<double>::max();
1311 for (data_type::const_iterator ix = data.begin(); ix != data.end(); ++ix) {
1318 ndf += ix->second.size();
1320 for (
const rate_type& iy : ix->second) {
1330 return { 0.0, ndf };
1333 for (
int pmt = 0; pmt != NUMBER_OF_PMTS; ++pmt) {
1341 double precessor = numeric_limits<double>::max();
1383 if (
debug >= debug_t) {
1394 for (
int pmt = 0; pmt != NUMBER_OF_PMTS; ++pmt) {
1404 for (
size_t i = 0; i != N; ++i) {
1410 h[i] = 1.0 / sqrt(
V(i,i));
1415 for (
size_t i = 0; i != N; ++i) {
1416 for (
size_t j = 0; j != i; ++j) {
1417 V(j,i) *=
h[i] *
h[j];
1422 for (
size_t i = 0; i != N; ++i) {
1428 for (
size_t col = 0; col != N; ++col) {
1435 catch (
const exception&
error) {
1437 ERROR(
"JGandalf: " <<
error.what() << endl <<
V << endl);
1444 const double factor = 2.0;
1456 for (
int pmt = 0; pmt != NUMBER_OF_PMTS; ++pmt) {
1466 return { precessor /
estimator->getRho(1.0), ndf };
1476 static constexpr double PIVOT = std::numeric_limits<double>::epsilon();
1497 using namespace std;
1498 using namespace JPP;
1514 R = model.getIndex(&JK40Parameters_t::R);
1515 p1 = model.getIndex(&JK40Parameters_t::p1);
1516 p2 = model.getIndex(&JK40Parameters_t::p2);
1517 p3 = model.getIndex(&JK40Parameters_t::p3);
1518 p4 = model.getIndex(&JK40Parameters_t::p4);
1519 cc = model.getIndex(&JK40Parameters_t::cc);
1520 bc = model.getIndex(&JK40Parameters_t::bc);
1550 const struct I_t :
public std::array<i_t, NUMBER_OF_PMTS> {
1553 int N = value.JK40Parameters::getN();
1555 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
1568 double operator[](
const int index)
const
1570 for (const_iterator i = this->begin(); i != this->end(); ++i) {
1571 if (i->first == index) {
1582#define PUSH_BACK(i,v) if (i != INVALID_INDEX) { buffer.push_back({i, v}); }
1585 size_t number_of_errors = 0;
1587 for (data_type::const_iterator ix = data.begin(); ix != data.end(); ++ix) {
1601 for (
const rate_type& iy : ix->second) {
1606 const double R = real.bc + real.
background +
R1 * (real.cc + R2);
1633 DEBUG(
"PMT pair(" << setw(2) <<
pair.first <<
"," << setw(2) <<
pair.second <<
") " <<
FIXED(7,3) << iy.
dt_ns <<
" [ns]" << endl);
1635 const double PRECISION = 1.0e-5;
1637#define MAKE_TEST(i,v) if (i != INVALID_INDEX) { \
1639 const bool status = fabs(buffer[i] - v) <= PRECISION; \
1641 DEBUG((status ? GREEN : RED) \
1642 << setw(20) << left << #i << right << ' ' \
1643 << setw(3) << i << ' ' \
1644 << FIXED(12,5) << buffer[i] << ' ' \
1645 << FIXED(12,5) << v << ' ' \
1646 << (!status ? "***" : "") \
1647 << RESET << endl); \
1650 number_of_errors += 1; \
1658 static_cast<JModel&
>(*this) = model;
1668 for (
int i = 0; i != NUMBER_OF_PMTS; ++i) {
1669 parameters[i].QE .relax();
1670 parameters[i].TTS.relax();
1671 parameters[i].t0 .relax();
1672 parameters[i].bg .relax();
1684 const double DX = 1.0e-8;
1718 for (buffer_type::const_iterator row = buffer.begin(); row != buffer.end(); ++row) {
1720 Y[row->first] += row->second;
1722 V[row->first][row->first] += row->second * row->second;
1724 for (buffer_type::const_iterator col = buffer.begin(); col != row; ++col) {
1725 V[row->first][col->first] += row->second * col->second;
1726 V[col->first][row->first] =
V[row->first][col->first];
1737 STATUS(
"Test finished with " << number_of_errors <<
" errors." << endl);
1739 exit(number_of_errors == 0 ? 0 : 1);
1751 using namespace std;
1760 catch (
const exception&
error) {}
1762#define SQRT(X) (X >= 0.0 ? sqrt(X) : std::numeric_limits<double>::max())
1774 for (
int pmt = 0; pmt != NUMBER_OF_PMTS; ++pmt) {
KM3NeT DAQ constants, bit handling, etc.
#define THROW(JException_t, A)
Marco for throwing exception with std::ostream compatible message.
Maximum likelihood estimator (M-estimators).
Base class for data structures with artithmetic capabilities.
General purpose messaging.
#define DEBUG(A)
Message macros.
Data structure for optical module.
Auxiliary class to define a range between two values.
std::shared_ptr< JMEstimator > estimator_type
static constexpr double LAMBDA_MIN
minimal value control parameter
static constexpr double LAMBDA_DOWN
multiplication factor control parameter
result_type operator()(const data_type &data)
Fit.
void seterr(const data_type &data)
Set errors.
static constexpr double LAMBDA_MAX
maximal value control parameter
static constexpr double LAMBDA_UP
multiplication factor control parameter
static constexpr double EPSILON
maximal distance to minimum.
JFit(const int option, const int debug)
Constructor.
void evaluate(const data_type &data)
Evaluation of fit.
static constexpr int MAXIMUM_ITERATIONS
maximal number of iterations.
static constexpr double PIVOT
minimal value diagonal element of matrix
estimator_type estimator
M-Estimator function.
Auxiliary class for fit parameter with optional limits.
JParameter_t & mul(const double factor)
Scale parameter.
void set(const double value)
Set value.
void fix()
Fix current value.
JParameter_t & sub(const JParameter_t ¶meter)
Subtract parameter.
JParameter_t & operator=(double value)
Assignment operator.
bool isFree() const
Check if parameter is free.
friend std::ostream & operator<<(std::ostream &out, const JParameter_t &object)
Write parameter to output stream.
friend std::istream & operator>>(std::istream &in, JParameter_t &object)
Read parameter from input stream.
JParameter_t & div(const double factor)
Scale parameter.
void relax()
Relax limits.
JParameter_t & mul(const JParameter_t &first, const JParameter_t &second)
Scale parameter.
double operator()() const
Type conversion operator.
void set()
Set current value.
JParameter_t(const double value, const range_type &range=range_type::DEFAULT_RANGE())
Constructor.
JParameter_t & negate()
Negate parameter.
JParameter_t()
Default constructor.
bool atLimit(const double precision) const
Check if parameter is at limit.
JTOOLS::JRange< double > range_type
Type definition for range of parameter values.
double getDerivative() const
Get derivative of value.
void setLimits(const double xmin, const double xmax)
Set limits.
JParameter_t & add(const JParameter_t ¶meter)
Add parameter.
void fix(const double value)
Fix value.
double get() const
Get value.
bool isBound() const
Check if parameter is bound.
bool isFixed() const
Check if parameter is fixed.
Interface to read input and write output for TObject tests.
Data structure for a composite optical module.
Exception for accessing a value in a collection that is outside of its range.
Auxiliary classes and methods for PMT calibration.
static double TEROSTAT_R1
scaling factor
static const int INVALID_INDEX
invalid index
@ FIT_PMTS_QE_FIXED_t
fit parameters of PMTs with QE fixed
@ FIT_PMTS_AND_ANGULAR_DEPENDENCE_t
fit parameters of PMTs and angular dependence of K40 rate
@ FIT_MODEL_t
fit parameters of K40 rate and TTSs of PMTs
@ FIT_PMTS_AND_BACKGROUND_t
fit parameters of PMTs and background
@ FIT_PMTS_t
fit parameters of PMTs
static double TEROSTAT_DZ
maximal PMT inclination
static double BELL_SHAPE
Bell shape.
double getDot(const JFirst_t &first, const JSecond_t &second)
Get dot product of objects.
This name space includes all other name spaces (except KM3NETDAQ, KM3NET and ANTARES).
Auxiliary data structure for sequence of same character.
Auxiliary data structure for floating point format specification.
PMT combinatorics for optical module.
Fit parameters for two-fold coincidence rate due to K40.
JParameter_t bc
constant background
JParameter_t R
maximal coincidence rate [Hz]
JParameter_t p1
1st order angle dependence coincidence rate
JParameter_t p2
2nd order angle dependence coincidence rate
friend std::ostream & operator<<(std::ostream &out, const JK40Parameters_t &object)
Write model parameters to output stream.
JParameter_t p3
3rd order angle dependence coincidence rate
const JK40Parameters_t & getK40Parameters() const
Get K40 parameters.
JParameter_t p4
4th order angle dependence coincidence rate
JParameter_t cc
fraction of signal correlated background
JK40Parameters_t()
Default constructor.
void setK40Parameters(const JK40Parameters_t ¶meters)
Set K40 parameters.
void print(std::ostream &out) const
Print model parameters to output stream conform include files.
Fit parameters for two-fold coincidence rate due to K40.
size_t getN() const
Get number of fit parameters.
const JK40Parameters_t & getGradient(const double ct) const
Get gradient.
JK40Parameters_t gradient
static const JK40Parameters & getInstance()
Get default values.
int getIndex(JParameter_t JK40Parameters::*p) const
Get index of parameter.
double getValue(const double ct) const
Get K40 coincidence rate as a function of cosine angle between PMT axes.
JK40Parameters()
Default constructor.
Auxiliary data structure for derived quantities of a given PMT pair.
double signal
combined signal
double sigma
total width [ns]
double cc
correlated background
double background
combined background
double t0
time offset [ns]
double bc
uncorrelated background
double ct
cosine angle between PMT axes
friend std::ostream & operator<<(std::ostream &out, const JModel_t &object)
Write model parameters to output stream.
JPMTParameters_t parameters[NUMBER_OF_PMTS]
JModel()
Default constructor.
friend std::ostream & operator<<(std::ostream &out, const JModel &object)
Write model parameters to output stream.
size_t getN() const
Get number of fit parameters.
double sigmaK40_ns
intrinsic K40 arrival time spread [ns]
JOption_t getOption() const
Get fit option.
double getFixedTimeOffset() const
Get time offset.
void setSigmaK40(const double sigma)
Set intrinsic K40 arrival time spread.
int getIndex() const
Get index of PMT used for fixed time offset.
double getSigmaK40() const
Get intrinsic K40 arrival time spread.
void setOption(const int option)
Set fit option.
const real_type & getReal(const pair_type &pair) const
Get derived quantities.
JModel(const JModule &module, const JK40Parameters ¶meters)
Constructor.
double getValue(const pair_type &pair, const double dt_ns) const
Get K40 coincidence rate.
void setIndex()
Set index of PMT used for fixed time offset.
JOption_t option
fit option (see JCALIBRATE::JOption_t)
JModel(const JModule &module, const JK40Parameters ¶meters, const JTDC_t::range_type &TDC, const int option)
Constructor.
bool hasFixedTimeOffset() const
Check if time offset is fixed.
int index
index of PMT used for fixed time offset
Fit parameters for single PMT.
static constexpr double QE_MIN
minimal QE
friend std::ostream & operator<<(std::ostream &out, const JPMTParameters_t &object)
Write PMT parameters to output stream.
JParameter_t t0
time offset [ns]
static constexpr double TTS_NS
start value transition-time spread [ns]
JParameter_t TTS
transition-time spread [ns]
void disable()
Disable PMT.
size_t getN() const
Get number of fit parameters.
JPMTParameters_t()
Default constructor.
void set(const JPMTParameters_t ¶meters)
Set parameters that are free to given values.
JParameter_t bg
background [Hz/ns]
static constexpr double QE_MAX
maximal QE
static const JPMTParameters_t & getInstance()
Get default values.
JParameter_t QE
relative quantum efficiency [unit]
Data structure for measured coincidence rates of all pairs of PMTs in optical module.
Data structure for measured coincidence rate of pair of PMTs.
rate_type(double dt_ns, double value, double error)
Constructor.
double error
error of rate [Hz/ns]
double value
value of rate [Hz/ns]
rate_type()
Default constructor.
double dt_ns
time difference [ns]
Interface for maximum likelihood estimator (M-estimator).
const JBell_t & getGradient(const double x) const
Get gradient.
double getValue(const double x) const
Function value.
Auxiliary base class for aritmetic operations of derived class types.
void resize(const size_t size)
Resize matrix.
JMatrixND & reset()
Set matrix to the null matrix.
void solve(JVectorND_t &u)
Get solution of equation A x = b.
void invert()
Invert matrix according LDU decomposition.