JLight.sh

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#!/usr/bin/env zsh
#
# \author mdejong
#
version=1.0
script=${0##*/}
 
# ------------------------------------------------------------------------------------------
#
#                         Utility script to plot optical properties of sea water.
#
# ------------------------------------------------------------------------------------------
 
 
if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi
 
 
source $JPP_DIR/setenv.sh $JPP_DIR
 
set_variable   DEBUG       2      
set_variable   WORKDIR     ${TMPDIR:-/tmp}/  
set_variable   DIR         $JPP_DIR/examples/JSirene
set_variable:  FORMAT      GRAPHICS_FORMAT        gif
set_variable+  BATCH       GRAPHICS_BATCH         -B
 
if do_usage $*; then
    usage "$script [working directory]"
fi
 
case $# in
    1) set_variable  WORKDIR  $1;;
esac
 
 
OUTPUT_FILE=$WORKDIR/light.root
 
$DIR/JLight \
    -o $OUTPUT_FILE               
 
 
JPlot1D \
    -f ${OUTPUT_FILE}:"pure"              \
    -f ${OUTPUT_FILE}:"smith&baker"       \
    -y "1.0 300"                          \
    -Y                                    \
    -> "#lambda [nm]"                    \
    -\^ "#lambda_{abs} [m]"               \
    -T ""                                 \
    -o water.$FORMAT                      $BATCH
 
JPlot1D \
    -f ${OUTPUT_FILE}:abs                 \
    -y "0 100"                            \
    -> "#lambda [nm]"                    \
    -\^ "#lambda_{abs} [m]"               \
    -L TR                                 \
    -o abs.$FORMAT                        $BATCH
 
 
JPlot1D \
    -f ${OUTPUT_FILE}:scat                \
    -y "0 150"                            \
    -> "#lambda [nm]"                    \
    -\^ "#lambda_{scat} [m]"              \
    -L TR                                 \
    -o scat.$FORMAT                       $BATCH
 
 
JPlot1D \
    -f ${OUTPUT_FILE}:vp                  \
    -y "1.0 1.6"                          \
    -> "#lambda [nm]"                    \
    -\^ "n"                               \
    -L TR                                 \
    -o vp.$FORMAT                         $BATCH
 
 
JPlot1D \
    -f ${OUTPUT_FILE}:vg                  \
    -y "1.0 1.6"                          \
    -> "#lambda [nm]"                    \
    -\^ "c/v_{group}"                     \
    -L TR                                 \
    -o vg.$FORMAT                         $BATCH
 
 
JPlot1D \
    -f ${OUTPUT_FILE}:Ps                  \
    -y "1e-2 20" -Y                       \
    -> "cos(#theta)"                     \
    -\^ "d^{2}P/dcos(#theta)d#phi"        \
    -L TR                                 \
    -o Ps.$FORMAT                         $BATCH