JPulsar.sh

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#!/usr/bin/env zsh
#
#
# \author mbouwhuis
#
version=1.0
script=${0##*/}
 
# ------------------------------------------------------------------------------------------
#
#                         Utility script to run JPulsar.
#
# ------------------------------------------------------------------------------------------
 
if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi
 
 
source $JPP_DIR/setenv.sh $JPP_DIR
 
if do_usage $*; then
    usage "$script <detector file> <input file> <output file>"
fi
 
if (( $# == 3 )); then
    set_variable DETECTOR    $1
    set_variable INPUT_FILE  $2
    set_variable OUTPUT_FILE $3
else
    fatal "Wrong number of arguments."
fi
 
 
if [[ ! -f $DETECTOR ]]; then
    fatal "Missing detector file $DETECTOR"
fi
 
 
if [[ ! -f $INPUT_FILE ]]; then
    fatal "Missing input file $INPUT_FILE"
fi
 
echo "Detector to overwrite: $DETECTOR."
echo "Input:                 $INPUT_FILE."
echo "Output:                $OUTPUT_FILE"
 
#
# DOM IDs in DU-2, reference channels from elog http://elog.km3net.de/DU+Integration/35
#
cat>dom_channel_map_du2<<EOF
808992603       5
808974928       5
808995481       5
808966287       5
808467569       5
808430036       5
808430571       5
808996420       5
808987051       5
808965918       5
808447091       5
808430449       5
808468365       5
808987121       0
808474231       0
809503299       0
808972586       0
808982574       0
EOF
 
#
# DOM IDs in DU-3
#
cat>dom_channel_map_du3<<EOF
808451481       8
808951763       8
806487207       8
808984760       8
808985313       8
808467131       8
808979223       8
808469410       8
808982559       8
809003766       8
808994625       8
808961271       8
806472277       8
809548782       8
808987120       8
808981888       8
808963072       8
808976325       8
EOF
 
 
#
# DOM IDs in DU-4
#
cat>dom_channel_map_du4<<EOF
808982550       12
809006175       12
808964845       12
808960476       12
809547596       30
808991947       30
808987098       30
808991967       30
808987950       30
808991955       30
809503407       30
809526122       30
808950076       30
808982608       12
808430346       12
808469399       12
808984598       12
808977112       12
EOF
 
#
# DOM IDs in DU-4; top hemisphere
#
cat>dom_channel_map_du4_top<<EOF
808982550       4
809006175       4
808964845       4
808960476       4
809547596       4
808991947       4
808987098       4
808991967       4
808987950       4
808991955       4
809503407       4
809526122       4
808950076       4
808982608       7
808430346       7
808469399       7
808984598       7
808977112       7
EOF
 
JPulsar         \
        -! "`cat dom_channel_map_du4_top`" \
        -f $INPUT_FILE          \
        -A                      \
        -o $OUTPUT_FILE         \
        -a $DETECTOR            
 
 
 
JPulsar         \
        -! "`cat dom_channel_map_du4_top`" \
        -f $INPUT_FILE          \
        -a $DETECTOR