JARCADesktop.sh

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#!/bin/zsh
#
# \author mdejong
#
script=${0##*/}

# ------------------------------------------------------------------------------------------
#
#                    Utility script to run reconstruction chain on a desktop.
#
# ------------------------------------------------------------------------------------------


if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi

source $JPP_DIR/setenv.sh $JPP_DIR

# list of applications in the processing chain

APPLICATIONS=(prefit simplex gandalf energy start)

set_variable  DEBUG               1
set_variable  FILE_PATTERN        $JPP_DATA/%.root
set_variable  DETECTOR            $JPP_DATA/km3net_reference.detx

if ( do_usage $* ); then
    usage "$script [detector file [file pattern]]"
fi

case $# in
    2) set_variable FILE_PATTERN  $2;&
    1) set_variable DETECTOR      $1;;
esac

# user interaction

for APP in $APPLICATIONS[*]; do
  reuse_file ${FILE_PATTERN/\%/${APP}}
done

# set up job

set_variable NOHUP_FILE  /tmp/abc.sh

rm -f $NOHUP_FILE

set_variable  INPUT_FILE   ${FILE_PATTERN/\%/trigger_efficiency+background}

for APP in $APPLICATIONS[*]; do

    set_variable  OUTPUT_FILE  ${FILE_PATTERN/\%/${APP}}

    if [[ ! -f $OUTPUT_FILE ]]; then
   echo JARCA${(C)APP}.sh $DETECTOR $INPUT_FILE $OUTPUT_FILE >> $NOHUP_FILE
    fi

    set_variable  INPUT_FILE   $OUTPUT_FILE
    
done

# submit job

chmod +x  $NOHUP_FILE
nohup     $NOHUP_FILE &