run_pulse_classification.sh

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#!/bin/zsh
#

version=1.0
script=${0##*/}

# ------------------------------------------------------------------------------------------
#
#                      Utility script to test JNanoBeacons/JOptimizeVoltage.
#
# ------------------------------------------------------------------------------------------

#echo $*
WORKDIR=$PWD

JNANODIR="/data/stu18q3km3/src/Jpp/trunk/examples/JNanobeacon"

source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null

if ( do_usage $* ); then
    usage "$script [edit the different options within]"
fi


#------------------------------------
# Input-Output definitions
#------------------------------------

string=2

analysis_level=0

top_pmts=1

bottom_pmts=4

max_neighbors=2

in_detx="/afs/in2p3.fr/home/r/rgracia/sps/KM3NeT/ORCA/Calibration/data/det/ORCA/KM3NeT_00000029_20170920.detx"

runs=(2745 2746 2747 2748 2749 2750 2751 2752 2753)

pulsedir="$WORKDIR/out/ORCA/JPulseFinder"

cd "${JNANODIR}"

for i in {1..$((${#runs[@]}))}

do

  infile="$pulsedir/JPF_${runs[i]}.root"  

  outfile="$pulsedir/Pulse_classification_${runs[i]}.root"


  pulse_classification \
      -a $in_detx \
      -f $infile \
      -s $string \
      -o $outfile \
      -l $analysis_level \
      -n $max_neighbors \
      -u $top_pmts \
      -d $bottom_pmts
done