JMakeHDE.sh

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#!/bin/zsh
#
# \author jseneca
#
version=1.0
script=${0##*/}

# ------------------------------------------------------------------------------------------
#
#            Utility script to create histogram of particle light pattern
#
# ------------------------------------------------------------------------------------------

INPUT_FILE="J-11_11_22s_example.HDE";

while getopts f:h option
do      case "$option" in
        f) INPUT_FILE="$OPTARG";;
        h) exit;;
    esac
done;

if [ -z $INPUT_FILE ]; then
    echo "Please pass data file."
    exit
fi

if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi

OUTPUT_FILE=""
PARTICLES_RE="J[-_[:digit:]]*?s"
if [[ $INPUT_FILE =~ $PARTICLES_RE ]]
then        
    OUTPUT_FILE="${MATCH}"
fi

OUTPUT_FILE="${OUTPUT_FILE}.dat"

source $JPP_DIR/setenv.sh $JPP_DIR

JMakeHDE \
    -f $INPUT_FILE     \
    -o $OUTPUT_FILE