Jpp  15.0.3
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JCalibratePosition.sh
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1 #!/bin/zsh
2 script=${0##*/}
3 
4 if [ -z $JPP_DIR ]; then
5  echo "Variable JPP_DIR undefined."
6  exit
7 fi
8 
9 source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null
10 
11 set_variable: DEBUG CALIBRATION_DEBUG 1
12 set_variable WORKDIR `pwd`
13 set_variable QUEUE_NAME ${TMPDIR:-/tmp}/queue
14 set_variable QUEUE_SIZE 3
15 
16 APPLICATIONS=(prefit simplex gandalf) # fit applications
17 
18 if do_usage $*; then
19  usage "$script <detector file> <string identifier> (input file)+"
20 fi
21 
22 if (( $# < 3 )); then
23  fatal "Not enough arguments."
24 fi
25 
26 set_variable DETECTOR $argv[1]
27 set_variable STRING_ID $argv[2]
28 
29 INPUT_FILES=($argv[3,-1])
30 
31 if ( ! is_CCLyon ); then
32 
33  # local batch processor
34 
35  source qlib.sh
36 
37  $JPP_DIR/examples/scripts/mkqueue.sh $QUEUE_NAME $QUEUE_SIZE continue
38 
39 else
40  fatal "The job submission should be changed for running in CC-Lyon."
41 fi
42 
43 if [[ $DETECTOR != *\.detx ]]; then
44  fatal "Invalid detector file <${DETECTOR}>."
45 fi
46 
47 # set path
48 
49 for (( i=1; i <= ${#INPUT_FILES}; i+=1 )); do
50 
51  set_variable INPUT_FILE ${INPUT_FILES[${i}]}
52 
53  if [[ -f `pwd`/$INPUT_FILE ]]; then
54  INPUT_FILES[${i}]=`pwd`/$INPUT_FILE
55  fi
56 done
57 
58 for TIME_OFFSET_NS in 0; do
59  for X_OFFSET_M in 0; do
60  for Y_OFFSET_M in 0; do
61  for Z_OFFSET_M in 0; do
62 
63  set_variable OUTPUT_DIRECTORY $WORKDIR/T=${TIME_OFFSET_NS}:X=${X_OFFSET_M}:Y=${Y_OFFSET_M}:Z=${Z_OFFSET_M}
64 
65  mkdir -p -- $OUTPUT_DIRECTORY
66 
67  # detector calibration
68 
69  if [[ ! -f $OUTPUT_DIRECTORY/detector.detx ]]; then
70 
71  JEditDetector \
72  -a $DETECTOR \
73  -S "$STRING_ID add $X_OFFSET_M $Y_OFFSET_M $Z_OFFSET_M" \
74  -s "$STRING_ID add $TIME_OFFSET_NS" \
75  -o $OUTPUT_DIRECTORY/detector.detx --!
76 
77  fi
78 
79  for FILE_NAME in $INPUT_FILES[*]; do
80 
81  set_variable APP ${APPLICATIONS[-1]}
82  set_variable INPUT_FILE ${FILE_NAME}
83  set_variable OUTPUT_FILE ${OUTPUT_DIRECTORY}/${${FILE_NAME##*/}/\.root/_${APP}.root}
84  set_variable BATCH_FILE ${OUTPUT_DIRECTORY}/${${FILE_NAME##*/}/\.root/.sh}
85 
86  rm -f $BATCH_FILE
87 
88  echo "#!/bin/zsh" >> $BATCH_FILE
89 
90  if [[ ! -f ${OUPUT_FILE} ]]; then
91 
92  # sequentially processing of applications
93 
94  for APP in $APPLICATIONS[*]; do
95 
96  set_variable OUTPUT_FILE ${OUTPUT_DIRECTORY}/${${FILE_NAME##*/}/\.root/_${APP}.root}
97 
98  echo "JARCA${(C)APP}.sh $OUTPUT_DIRECTORY/detector.detx $INPUT_FILE $OUTPUT_FILE >& /dev/null" >> $BATCH_FILE
99 
100  set_variable INPUT_FILE ${OUTPUT_FILE}
101 
102  done
103 
104  # cleanup
105 
106  for (( i=1; i < ${#APPLICATIONS}; i+=1 )); do
107 
108  set_variable APP ${APPLICATIONS[${i}]}
109  set_variable OUTPUT_FILE ${OUTPUT_DIRECTORY}/${${FILE_NAME##*/}/\.root/_${APP}.root}
110 
111  echo "rm -f $OUTPUT_FILE" >> $BATCH_FILE
112 
113  done
114 
115  echo "rm -f $BATCH_FILE" >> $BATCH_FILE
116 
117  # submit job
118 
119  chmod +x $BATCH_FILE
120  puts_queue $QUEUE_NAME $BATCH_FILE
121 
122  fi
123  done
124  done
125  done
126  done
127 done
$argv
then usage $script< detector file >< detectorfile > nIf the range of floors is the first detector file is aligned to the second before the comparison nIn only modules within the given range of floors are used fi case set_variable RANGE $argv[3]
Definition: JCompareDetector.sh:31
$INPUT_FILES
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR set_variable DEBUG set_variable WORKDIR if do_usage *then usage for INPUT_FILE in $INPUT_FILES[*]
Definition: JCheckTriggerParameters.sh:31
INPUT_FILE
set_variable INPUT_FILE
Definition: JARCACalibrateMuon.sh:30
APPLICATIONS
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR APPLICATIONS
Definition: JMuonPostfit.sh:25
queue
then echo Submitting reweighting and histogram comparison jobs to nikhef stbc batch queue
Definition: JEvtReweightMupageParameterScan.sh:108
f
o $QUALITY_ROOT d $DEBUG!JPlot1D f
Definition: JDataQuality.sh:66
exit
exit
Definition: JPizza.sh:36
Y
then fatal Wrong number of arguments fi set_variable STRING $argv[1] set_variable DETECTORXY_TXT $WORKDIR $DETECTORXY_TXT tail read X Y CHI2 RMS printf optimum n $X $Y $CHI2 $RMS awk v Y
Definition: detector-XY:fit1d.sh:33
puts_queue
function puts_queue()
Definition: qlib.sh:34
echo
then echo
Definition: JDOMDAQDriver.sh:56
APP
do set_variable APP
Definition: JCalibrateHeight.sh:80
set_variable
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable
Definition: JAcoustics.sh:20
T
do set_variable OUTPUT_DIRECTORY $WORKDIR T
Definition: JCalibrateHeight.sh:61
X
then break fi done getCenter read X Y Z let X
Definition: acoustics-fit.sh:523
done
set_variable NUMBER_OF_ITERATIONS set_variable EPSILON cat acoustics_fit_parameters txt<< EOF $CONFIGURATION[*]Nmin=3;sigma_s=100.0e-6;stdev=10.0;mestimator=0;fixStrings=0;EOF for STRING in $STRINGS[*];do#fit stretching and(z) position of given string set_variable DETECTOR_TMP ${TMPDIR:-/tmp}/detector_A.datx JEditDetector-a $DETECTOR-o $DETECTOR_TMP-r $STRING JEditDetector-a $DETECTOR-o $DETECTOR-k $STRING for MUL in 0.005 0.001;do DX_M=0.2 for((N=0;$N< $NUMBER_OF_ITERATIONS;++N));do CHI2[3]=$CHI2[1] fitPositionOfString $STRING Z $DX_M fitStretchingOfString $STRING $MUL if(($CHI2[3]-$CHI2[1]< $EPSILON));then break fi done if(($N >=$NUMBER_OF_ITERATIONS));then printf"warning: reached maximum number of iterations %d - converenge %7.3f\n"$N $(($CHI2[3]-$CHI2[1])) fi done JMergeDetector-a $DETECTOR-a $DETECTOR_TMP-o $DETECTOR rm-f $DETECTOR_TMP JConvertDetectorFormat-a $DETECTOR-o $DETECTOR-r-d 0 > &dev null done
Definition: acoustics-fit.sh:563
TMPDIR
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR if do_usage *then usage $script[(input file)+] fi set_variable DEBUG set_variable WORKDIR TMPDIR
Definition: examples/JReconstruction/JEnergyCorrection.sh:21
WORKDIR
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DEBUG set_variable WORKDIR
Definition: JLegolas.sh:20
usage
* usage
Definition: JLigier-local.sh:34
o
then JConvertDetectorFormat a $DETECTOR[1] o
Definition: JCompareDetector.sh:45
$INPUT_FILE
then JFileTuna f $INPUT_FILE
Definition: file-Tuna.sh:66
INPUT_FILES
do sput $STRING $FLOOR sget MODULE INPUT_FILES
Definition: JCanberra.sh:73
S
do set_variable SIGMA_NS set_variable OUTLIERS set_variable OUTPUT_FILE matrix[${ALPHA_DEG}\deg\] root $JPP JMatrixNZ a $DETECTOR f $INPUT_FILE o $OUTPUT_FILE S
Definition: JMatrixNZ.sh:58
OUTPUT_FILE
&set_variable OUTPUT_FILE
Definition: JARCACalibrateMuon.sh:29
a
then JCalibrateToT a
Definition: JTuneHV.sh:116
$DETECTOR
then set_variable MODULE getModule a $DETECTOR L $STRING $FLOOR JEditDetector a $DETECTOR M $MODULE add $X o $DETECTOR else echo No update of detector $DETECTOR
Definition: module-Z:fit.sh:118
DEBUG
then usage $script< input_file >< detector_file > fi set_variable OUTPUT_DIR set_variable SELECTOR JDAQTimesliceL1 set_variable DEBUG case set_variable DEBUG
Definition: JCalibratePMT.sh:21
$WORKDIR
then display $WORKDIR
Definition: plot-Domino.sh:128
Z
do set_variable MODULE getModule a $WORKDIR detector_a datx L $STRING JEditDetector a $WORKDIR detector_a datx M $MODULE setz o $WORKDIR detector_a datx JEditDetector a $WORKDIR detector_b datx M $MODULE setz o $WORKDIR detector_b datx done echo Output stored at $WORKDIR detector_a datx and $WORKDIR tripod_a txt JDrawDetector2D a $WORKDIR detector_a datx a $WORKDIR detector_b datx L BL o detector $FORMAT $BATCH JDrawDetector2D T $WORKDIR tripod_a txt T $WORKDIR tripod_b txt L BL o tripod $FORMAT $BATCH JCompareDetector a $WORKDIR detector_a datx b $WORKDIR detector_b datx o $WORKDIR abc root &dev null for KEY in X Y Z
Definition: JAlignDetector.sh:81
DETECTOR
set_variable DETECTOR
Definition: JARCACalibrateMuon.sh:31
detector
do set_variable DETECTOR_TXT $WORKDIR detector
Definition: detector-XY:fit1d.sh:38
in
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY source JAcoustics sh $DETECTOR_ID CHECK_EXIT_CODE typeset A TRIPODS get_tripods $WORKDIR tripod txt TRIPODS for EMITTER in
Definition: JCanberra.sh:42
script
script
Definition: JAcoustics.sh:2
null
esac $JPP_BIN JLogger sh $LOGGER until pgrep JGetMessage</dev/null > dev null
Definition: examples/JLogger/JLogger.sh:33
$APPLICATIONS
then rm i $OUTPUT_FILE fi done for APP in $APPLICATIONS[*]
Definition: JMuonPostfit.sh:111
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