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JORCAShowerReconstruction.sh
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1 #!/bin/zsh
2 #
3 # \author adomi
4 #
5 script=${0##*/}
6 
7 
8 # ------------------------------------------------------------------------------------------
9 #
10 # Script to run the JPP Shower Reconstruction Chain for ORCA.
11 #
12 # ------------------------------------------------------------------------------------------
13 
14 
15 if [ -z $JPP_DIR ]; then
16  echo "Variable JPP_DIR undefined."
17  exit
18 fi
19 source $JPP_DIR/setenv.sh $JPP_DIR
20 
21 set_variable: DEBUG RECONSTRUCTION_DEBUG 1
22 set_variable: PDF RECONSTRUCTION_PDF $JPP_DATA/J%p.dat
23 set_variable: SUFFIX RECONSTRUCTION_SUFFIX jchain.orca
24 set_variable: NUMBER_OF_EVENTS RECONSTRUCTION_NUMBER_OF_EVENTS $((2**31))
25 set_variable: TMAX_S RECONSTRUCTION_TMAX_S 100
26 
27 if do_usage $*; then
28  usage "$script <detector file> <input file> <output file> <PMT parameters file> [(calibration file)+]"
29 fi
30 
31 set_variable DETECTOR $argv[1]
32 set_variable INPUT_FILE $argv[2]
33 set_variable OUTPUT_FILE $argv[3]
34 set_variable PMT $argv[4]
35 set_array CALIBRATION $argv[5,-1]
36 
37 if [[ ! "$OUTPUT_FILE" == *"%"* ]]; then
38  fatal "The output file must have the wildcard % in the name, e.g. %.root"
39 fi
40 
41 typeset -A PARAMETERS
42 
43 # ------------------------------------------------------------------------------------------
44 # JShowerPrefit
45 # ------------------------------------------------------------------------------------------
46 
47 # default input values
48 PARAMETERS=(
49  factoryLimit 40
50  NMaxHits 20
51  sigma_ns 4
52  numberOfOutliers 4
53  TMaxLocal_ns 120
54  ctMin -0.7
55  roadWidth_m 50
56  numberOfPrefits 50) #JShowerPointSimplex needs 50 prefits from JShowerPrefit
57 
58 timer_start
59 
60 eval JShowerPrefit \
61  -a $DETECTOR \
62  -+${^CALIBRATION} \
63  -T $TMAX_S \
64  -f $INPUT_FILE \
65  -o ${OUTPUT_FILE/\%/jshprefit} \
66  -n ${NUMBER_OF_EVENTS} \
67  -@ `make_equation PARAMETERS` \
68  -d ${DEBUG} --!
69 
70 timer_stop
71 timer_print
72 
73 
74 # ------------------------------------------------------------------------------------------
75 # JShowerPointSimplex
76 # ------------------------------------------------------------------------------------------
77 
78 # default input values
79 PARAMETERS=(
80  numberOfPrefits 0 # 0 means all inputs are processed
81  numberOfOutfits 100
82  minPrefitsSize 9
83  sigma_ns 1
84  TMaxLocal_ns 15
85  TMax_ns 60
86  TMin_ns -60
87  roadWidth_m 60
88  ctMin 0.2
89  TWindow_ns "-130 120"
90  pos_grid_m " -20 20"
91  pos_step_m 20
92  time_grid_ns " -90 90"
93  time_step_ns 30
94  simplex_step_m 2
95  simplex_step_ns 10
96  tukey_std_dev 20.0)
97 
98 timer_start
99 
100 eval JShowerPointSimplex \
101  -a $DETECTOR \
102  -+${^CALIBRATION} \
103  -T $TMAX_S \
104  -f ${OUTPUT_FILE/\%/jshprefit} \
105  -o ${OUTPUT_FILE/\%/jshpointsimplex} \
106  -@ `make_equation PARAMETERS` \
107  -d ${DEBUG} --!
108 
109 timer_stop
110 timer_print
111 
112 rm -vf ${OUTPUT_FILE/\%/jshprefit}
113 
114 # ------------------------------------------------------------------------------------------
115 # JShowerPositionFit
116 # ------------------------------------------------------------------------------------------
117 
118 # default input values
119 PARAMETERS=(
120  numberOfPrefits 0
121  numberOfOutfits 5
122  TMax_ns 120
123  TMin_ns -120
124  roadWidth_m 80
125  E_GeV 10
126  R_Hz 10000
127  TTS_ns 2)
128 
129 timer_start
130 
131 eval JShowerPositionFit \
132  -a $DETECTOR \
133  -+${^CALIBRATION} \
134  -T $TMAX_S \
135  -f ${OUTPUT_FILE/\%/jshpointsimplex} \
136  -F $PDF \
137  -o ${OUTPUT_FILE/\%/jshpositionfit} \
138  -@ `make_equation PARAMETERS` \
139  -d ${DEBUG} --!
140 
141 timer_stop
142 timer_print
143 
144 rm -vf ${OUTPUT_FILE/\%/jshpointsimplex}
145 
146 # ------------------------------------------------------------------------------------------
147 # JShowerEnergyPrefit
148 # ------------------------------------------------------------------------------------------
149 
150 # default input values
151 PARAMETERS=(
152  numberOfPrefits 0
153  numberOfOutfits 1
154  Emin_GeV 1
155  Emax_GeV 100
156  resolution 0.01
157  TMax_ns 500
158  TMin_ns -500
159  R_Hz 10000
160  mestimator 3
161  roadWidth_m 80)
162 
163 timer_start
164 
165 eval JShowerEnergyPrefit \
166  -a $DETECTOR \
167  -+${^CALIBRATION} \
168  -T $TMAX_S \
169  -f ${OUTPUT_FILE/\%/jshpositionfit} \
170  -F $PDF \
171  -o ${OUTPUT_FILE/\%/jshenergyprefit} \
172  -@ `make_equation PARAMETERS` \
173  -d $DEBUG --!
174 
175 timer_stop
176 timer_print
177 
178 rm -vf ${OUTPUT_FILE/\%/jshpositionfit}
179 
180 # ------------------------------------------------------------------------------------------
181 # JShowerDirectionPrefit
182 # ------------------------------------------------------------------------------------------
183 
184 # default input values
185 PARAMETERS=(
186  numberOfPrefits 0
187  numberOfOutfits 4
188  TMax_ns 30
189  TMin_ns -30
190  roadWidth_m 80
191  DMin_m 80 # can be lower to speed up the reconstruction (for online)
192  E_GeV 13
193  R_Hz 10000
194  mestimator 3 # 0=normal, 1=lorentzian, 2=linear, 3=null
195  MaxAngle_deg_lowE 40
196  scanAngle_deg_lowE 10
197  MaxAngle_deg_highE 20
198  scanAngle_deg_highE 5)
199 
200 timer_start
201 
202 eval JShowerDirectionPrefit \
203  -a $DETECTOR \
204  -+${^CALIBRATION} \
205  -T $TMAX_S \
206  -f ${OUTPUT_FILE/\%/jshenergyprefit} \
207  -F $PDF \
208  -o ${OUTPUT_FILE/\%/jshdirectionprefit} \
209  -@ `make_equation PARAMETERS` \
210  -d $DEBUG --!
211 
212 timer_stop
213 timer_print
214 
215 rm -vf ${OUTPUT_FILE/\%/jshenergyprefit}
216 
217 # ------------------------------------------------------------------------------------------
218 # JShowerFit
219 # ------------------------------------------------------------------------------------------
220 
221 # default input values
222 PARAMETERS=(
223  numberOfPrefits 4
224  TMax_ns 30
225  TMin_ns -30
226  roadWidth_m 80
227  R_Hz 10000
228  mestimator 3 # 0=normal, 1=lorentzian, 2=linear, 3=null
229  fit_step 0.05)
230 
231 timer_start
232 
233 eval JShowerFit \
234  -a $DETECTOR \
235  -+${^CALIBRATION} \
236  -T $TMAX_S \
237  -f ${OUTPUT_FILE/\%/jshdirectionprefit} \
238  -F $PDF \
239  -o ${OUTPUT_FILE/\%/jshfit} \
240  -@ `make_equation PARAMETERS` \
241  -E $JPP_DIR/software/JReconstruction/energy_correction_showerfit_fullorca.txt \
242  -d $DEBUG --!
243 
244 CHECK_EXIT_CODE
245 
246 timer_stop
247 timer_print
248 
249 rm -vf ${OUTPUT_FILE/\%/jshdirectionprefit}
250 
251 # ------------------------------------------------------------------------------------------
252 # rename outputfile
253 # ------------------------------------------------------------------------------------------
254 
255 timer_start
256 
257 mv \
258  ${OUTPUT_FILE/\%/jshfit} \
259  ${OUTPUT_FILE/\%/${SUFFIX}} \
260  -v
261 
262 timer_stop
263 timer_print
264 
265 
266 # ------------------------------------------------------------------------------------------
267 # JConvertEvt
268 # ------------------------------------------------------------------------------------------
269 
270 timer_start
271 
272 JConvertEvt \
273  -f ${OUTPUT_FILE/\%/${SUFFIX}} \
274  -o ${OUTPUT_FILE/\%/${SUFFIX}.aanet} \
275  -a $DETECTOR \
276  -+${^CALIBRATION} \
277  -T $TMAX_S \
278  -P $PMT \
279  -d $DEBUG --!
280 
281 timer_stop
282 timer_print
PDF
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR set_variable DEBUG set_variable PDF $JPP_DATA J p dat set_variable HISTOGRAM if do_usage *then usage $script< detector file >< inputfile >< outputfile > fi case set_variable PDF
Definition: JARCACalibrateMuon.sh:23
NUMBER_OF_EVENTS
then usage $script< input_file >< detector_file >< output_file(.root)> fi set_variable NUMBER_OF_TIMESLICES set_variable NUMBER_OF_SUMMARYSLICES set_variable NUMBER_OF_EVENTS set_variable ALL_PLOTS case set_variable NUMBER_OF_EVENTS
Definition: JRunAnalyzer.sh:18
$argv
*set_variable DETECTOR_ID $argv[1] set_array RUNS $argv[2,-2]
Definition: JDataQuality.sh:24
E
then usage E
Definition: JMuonPostfit.sh:35
file
then set_variable PMT_FILE set_variable DAQ_FILE set_variable OUTPUT_FILE set_variable DETECTOR else fatal Wrong number of arguments fi set_variable RUNBYRUN file
Definition: JRandomEventRunByRun.sh:46
JDATABASE::PBS::PMT
static const JPBS_t PMT(3, 4, 2, 3)
PBS of photo-multiplier tube (PMT)
lorentzian
then for mestimator in normal linear lorentzian
Definition: JMEstimator.sh:34
name
then echo Enter input within $TIMEOUT_S seconds echo n User name
Definition: JCookie.sh:42
f
o $QUALITY_ROOT d $DEBUG!JPlot1D f
Definition: JDataQuality.sh:66
mestimator
mestimator
Definition: acoustics-fit.sh:494
parameters
*fatal Wrong number of arguments esac JCookie sh typeset Z DETECTOR typeset Z SOURCE_RUN typeset Z TARGET_RUN set_variable PARAMETERS_FILE $WORKDIR parameters
Definition: diff-Tuna.sh:38
exit
exit
Definition: JPizza.sh:36
echo
then echo
Definition: JDOMDAQDriver.sh:56
JTOOLS::n
const int n
Definition: JPolint.hh:676
timer_start
then timer_start(JRandomTimesliceWriter-a ${DETECTOR}-o ${PIPE}-n ${NUMBER_OF_SLICES}-P ${PMT_FILE}-d ${DEBUG}-S ${SEED}-B"$BACKGROUND_HZ"-N"$RECYCLING"--!&&for((i=0;$i!=10;++i));do;echo 'EOF' > $PIPE;usleep 100000;done &&rm-f $PIPE)&JTimesliceReprocessor-a $
Definition: JTimesliceReprocessor.sh:57
set_variable
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable
Definition: JAcoustics.sh:20
T
do set_variable OUTPUT_DIRECTORY $WORKDIR T
Definition: JCalibrateHeight.sh:61
F
then awk F
Definition: getMIIseacurrent.sh:86
usage
* usage
Definition: JLigier-local.sh:34
o
then JConvertDetectorFormat a $DETECTOR[1] o
Definition: JCompareDetector.sh:45
$INPUT_FILE
then JFileTuna f $INPUT_FILE
Definition: file-Tuna.sh:66
INPUT_FILE
set_variable INPUT_FILE
Definition: JARCACalibrateMuon.sh:30
root
do JPlot2D f $WORKDIR detector root
Definition: JCompareDetector.sh:95
OUTPUT_FILE
&set_variable OUTPUT_FILE
Definition: JARCACalibrateMuon.sh:29
d
then JMuonMCEvt f $INPUT_FILE o $INTERMEDIATE_FILE d
Definition: JMuonPath.sh:47
$script
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR set_variable DEBUG set_variable WORKDIR if do_usage *then usage $script(input file)+" fi if (( $ fatal "Invalid number of arguments." fi JCookie.sh set_array INPUT_FILES $argv[1
a
then JCalibrateToT a
Definition: JTuneHV.sh:116
$DETECTOR
then set_variable MODULE getModule a $DETECTOR L $STRING $FLOOR JEditDetector a $DETECTOR M $MODULE add $X o $DETECTOR else echo No update of detector $DETECTOR
Definition: module-Z:fit.sh:118
DEBUG
then usage $script< input_file >< detector_file > fi set_variable OUTPUT_DIR set_variable SELECTOR JDAQTimesliceL1 set_variable DEBUG case set_variable DEBUG
Definition: JCalibratePMT.sh:21
DETECTOR
set_variable DETECTOR
Definition: JARCACalibrateMuon.sh:31
detector
do set_variable DETECTOR_TXT $WORKDIR detector
Definition: detector-XY:fit1d.sh:38
JTOOLS::v
data_type v[N+1][M+1]
Definition: JPolint.hh:756
in
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY source JAcoustics sh $DETECTOR_ID CHECK_EXIT_CODE typeset A TRIPODS get_tripods $WORKDIR tripod txt TRIPODS for EMITTER in
Definition: JCanberra.sh:42
A
source $JPP_DIR setenv csh $JPP_DIR &dev null eval JShellParser o a A
Definition: JShellParser.csh:15
script
script
Definition: JAcoustics.sh:2
null
esac $JPP_BIN JLogger sh $LOGGER until pgrep JGetMessage</dev/null > dev null
Definition: examples/JLogger/JLogger.sh:33
P
then $DIR JPlotNPE PDG P
Definition: JPlotNPE-PDG.sh:62
if
do if[[!-f $ACOUSTICS_WORKDIR/${KEY}.txt]]
Definition: JAcoustics.sh:39
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