Jpp  16.0.3
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JCalibratePosition.sh
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1 #!/bin/zsh
2 script=${0##*/}
3 
4 if [ -z $JPP_DIR ]; then
5  echo "Variable JPP_DIR undefined."
6  exit
7 fi
8 
9 source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null
10 
11 set_variable: DEBUG CALIBRATION_DEBUG 1
12 set_variable WORKDIR `pwd`
13 set_variable QUEUE_NAME ${TMPDIR:-/tmp}/queue
14 set_variable QUEUE_SIZE 3
15 
16 APPLICATIONS=(prefit simplex gandalf) # fit applications
17 
18 if do_usage $*; then
19  usage "$script <detector file> <string identifier> (input file)+"
20 fi
21 
22 if (( $# < 3 )); then
23  fatal "Not enough arguments."
24 fi
25 
26 set_variable DETECTOR $argv[1]
27 set_variable STRING_ID $argv[2]
28 
29 INPUT_FILES=($argv[3,-1])
30 
31 if ( ! is_CCLyon ); then
32 
33  # local batch processor
34 
35  source qlib.sh
36 
37  $JPP_DIR/examples/scripts/mkqueue.sh $QUEUE_NAME $QUEUE_SIZE continue
38 
39 else
40  fatal "The job submission should be changed for running in CC-Lyon."
41 fi
42 
43 if [[ $DETECTOR != *\.detx ]]; then
44  fatal "Invalid detector file <${DETECTOR}>."
45 fi
46 
47 # set path
48 
49 for (( i=1; i <= ${#INPUT_FILES}; i+=1 )); do
50 
51  set_variable INPUT_FILE ${INPUT_FILES[${i}]}
52 
53  if [[ -f `pwd`/$INPUT_FILE ]]; then
54  INPUT_FILES[${i}]=`pwd`/$INPUT_FILE
55  fi
56 done
57 
58 for TIME_OFFSET_NS in 0; do
59  for X_OFFSET_M in 0; do
60  for Y_OFFSET_M in 0; do
61  for Z_OFFSET_M in 0; do
62 
63  set_variable OUTPUT_DIRECTORY $WORKDIR/T=${TIME_OFFSET_NS}:X=${X_OFFSET_M}:Y=${Y_OFFSET_M}:Z=${Z_OFFSET_M}
64 
65  mkdir -p -- $OUTPUT_DIRECTORY
66 
67  # detector calibration
68 
69  if [[ ! -f $OUTPUT_DIRECTORY/detector.detx ]]; then
70 
71  JEditDetector \
72  -a $DETECTOR \
73  -S "$STRING_ID add $X_OFFSET_M $Y_OFFSET_M $Z_OFFSET_M" \
74  -s "$STRING_ID add $TIME_OFFSET_NS" \
75  -o $OUTPUT_DIRECTORY/detector.detx --!
76 
77  fi
78 
79  for FILE_NAME in $INPUT_FILES[*]; do
80 
81  set_variable APP ${APPLICATIONS[-1]}
82  set_variable INPUT_FILE ${FILE_NAME}
83  set_variable OUTPUT_FILE ${OUTPUT_DIRECTORY}/${${FILE_NAME##*/}/\.root/_${APP}.root}
84  set_variable BATCH_FILE ${OUTPUT_DIRECTORY}/${${FILE_NAME##*/}/\.root/.sh}
85 
86  rm -f $BATCH_FILE
87 
88  echo "#!/bin/zsh" >> $BATCH_FILE
89 
90  if [[ ! -f ${OUPUT_FILE} ]]; then
91 
92  # sequentially processing of applications
93 
94  for APP in $APPLICATIONS[*]; do
95 
96  set_variable OUTPUT_FILE ${OUTPUT_DIRECTORY}/${${FILE_NAME##*/}/\.root/_${APP}.root}
97 
98  echo "JARCA${(C)APP}.sh $OUTPUT_DIRECTORY/detector.detx $INPUT_FILE $OUTPUT_FILE >& /dev/null" >> $BATCH_FILE
99 
100  set_variable INPUT_FILE ${OUTPUT_FILE}
101 
102  done
103 
104  # cleanup
105 
106  for (( i=1; i < ${#APPLICATIONS}; i+=1 )); do
107 
108  set_variable APP ${APPLICATIONS[${i}]}
109  set_variable OUTPUT_FILE ${OUTPUT_DIRECTORY}/${${FILE_NAME##*/}/\.root/_${APP}.root}
110 
111  echo "rm -f $OUTPUT_FILE" >> $BATCH_FILE
112 
113  done
114 
115  echo "rm -f $BATCH_FILE" >> $BATCH_FILE
116 
117  # submit job
118 
119  chmod +x $BATCH_FILE
120  puts_queue $QUEUE_NAME $BATCH_FILE
121 
122  fi
123  done
124  done
125  done
126  done
127 done
$INPUT_FILES
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR set_variable DEBUG set_variable WORKDIR if do_usage *then usage for INPUT_FILE in $INPUT_FILES[*]
Definition: JCheckTriggerParameters.sh:31
$argv
*set_variable DETECTOR_ID $argv[1] set_array RUNS $argv[2,-2]
Definition: JDataQuality.sh:24
APPLICATIONS
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR APPLICATIONS
Definition: JMuonPostfit.sh:25
queue
then echo Submitting reweighting and histogram comparison jobs to nikhef stbc batch queue
Definition: JEvtReweightMupageParameterScan.sh:108
f
o $QUALITY_ROOT d $DEBUG!JPlot1D f
Definition: JDataQuality.sh:66
exit
exit
Definition: JPizza.sh:36
Y
then fatal Wrong number of arguments fi set_variable STRING $argv[1] set_variable DETECTORXY_TXT $WORKDIR $DETECTORXY_TXT tail read X Y CHI2 RMS printf optimum n $X $Y $CHI2 $RMS awk v Y
Definition: detector-XY:fit1d.sh:33
puts_queue
function puts_queue()
Definition: qlib.sh:34
echo
then echo
Definition: JDOMDAQDriver.sh:56
APP
do set_variable APP
Definition: JCalibrateHeight.sh:80
set_variable
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable
Definition: JAcoustics.sh:20
TMPDIR
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR if do_usage *then usage $script[(input file)+] fi set_variable DEBUG set_variable WORKDIR TMPDIR
Definition: JEnergyCorrection.sh:21
T
do set_variable OUTPUT_DIRECTORY $WORKDIR T
Definition: JCalibrateHeight.sh:61
X
then break fi done getCenter read X Y Z let X
Definition: acoustics-fit.sh:523
done
set_variable NUMBER_OF_ITERATIONS set_variable EPSILON cat acoustics_fit_parameters txt<< EOF $CONFIGURATION[*]Nmin=3;sigma_s=100.0e-6;stdev=10.0;mestimator=0;fixStrings=0;EOF for STRING in $STRINGS[*];do#fit stretching and(z) position of given string set_variable DETECTOR_TMP ${TMPDIR:-/tmp}/detector_A.datx JEditDetector-a $DETECTOR-o $DETECTOR_TMP-r $STRING JEditDetector-a $DETECTOR-o $DETECTOR-k $STRING for MUL in 0.005 0.001;do DX_M=0.2 for((N=0;$N< $NUMBER_OF_ITERATIONS;++N));do CHI2[3]=$CHI2[1] fitPositionOfString $STRING Z $DX_M fitStretchingOfString $STRING $MUL if(($CHI2[3]-$CHI2[1]< $EPSILON));then break fi done if(($N >=$NUMBER_OF_ITERATIONS));then printf"warning: reached maximum number of iterations %d - converenge %7.3f\n"$N $(($CHI2[3]-$CHI2[1])) fi done JMergeDetector-a $DETECTOR-a $DETECTOR_TMP-o $DETECTOR rm-f $DETECTOR_TMP JConvertDetectorFormat-a $DETECTOR-o $DETECTOR-r-d 0 > &dev null done
Definition: acoustics-fit.sh:563
$APPLICATIONS
then rm i $OUTPUT_FILE fi done for APP in $APPLICATIONS[*]
Definition: JShowerPostfit.sh:84
WORKDIR
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DEBUG set_variable WORKDIR
Definition: JLegolas.sh:20
usage
* usage
Definition: JLigier-local.sh:34
o
then JConvertDetectorFormat a $DETECTOR[1] o
Definition: JCompareDetector.sh:45
$INPUT_FILE
then JFileTuna f $INPUT_FILE
Definition: file-Tuna.sh:66
INPUT_FILE
set_variable INPUT_FILE
Definition: JARCACalibrateMuon.sh:30
INPUT_FILES
do sput $STRING $FLOOR sget MODULE INPUT_FILES
Definition: JCanberra.sh:73
S
do set_variable SIGMA_NS set_variable OUTLIERS set_variable OUTPUT_FILE matrix[${ALPHA_DEG}\deg\] root $JPP JMatrixNZ a $DETECTOR f $INPUT_FILE o $OUTPUT_FILE S
Definition: JMatrixNZ.sh:58
OUTPUT_FILE
&set_variable OUTPUT_FILE
Definition: JARCACalibrateMuon.sh:29
a
then JCalibrateToT a
Definition: JTuneHV.sh:116
$DETECTOR
then set_variable MODULE getModule a $DETECTOR L $STRING $FLOOR JEditDetector a $DETECTOR M $MODULE add $X o $DETECTOR else echo No update of detector $DETECTOR
Definition: module-Z:fit.sh:118
DEBUG
then usage $script< input_file >< detector_file > fi set_variable OUTPUT_DIR set_variable SELECTOR JDAQTimesliceL1 set_variable DEBUG case set_variable DEBUG
Definition: JCalibratePMT.sh:21
$WORKDIR
then display $WORKDIR
Definition: plot-Domino.sh:128
Z
do set_variable MODULE getModule a $WORKDIR detector_a datx L $STRING JEditDetector a $WORKDIR detector_a datx M $MODULE setz o $WORKDIR detector_a datx JEditDetector a $WORKDIR detector_b datx M $MODULE setz o $WORKDIR detector_b datx done echo Output stored at $WORKDIR detector_a datx and $WORKDIR tripod_a txt JDrawDetector2D a $WORKDIR detector_a datx a $WORKDIR detector_b datx L BL o detector $FORMAT $BATCH JDrawDetector2D T $WORKDIR tripod_a txt T $WORKDIR tripod_b txt L BL o tripod $FORMAT $BATCH JCompareDetector a $WORKDIR detector_a datx b $WORKDIR detector_b datx o $WORKDIR abc root &dev null for KEY in X Y Z
Definition: JAlignDetector.sh:81
DETECTOR
set_variable DETECTOR
Definition: JARCACalibrateMuon.sh:31
detector
do set_variable DETECTOR_TXT $WORKDIR detector
Definition: detector-XY:fit1d.sh:38
in
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY source JAcoustics sh $DETECTOR_ID CHECK_EXIT_CODE typeset A TRIPODS get_tripods $WORKDIR tripod txt TRIPODS for EMITTER in
Definition: JCanberra.sh:42
script
script
Definition: JAcoustics.sh:2
null
esac $JPP_BIN JLogger sh $LOGGER until pgrep JGetMessage</dev/null > dev null
Definition: examples/JLogger/JLogger.sh:33
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