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pre-calibration_00000100.sh
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1 #!/bin/zsh
2 script=${0##*/}
3 
4 # --------------------------------------------------------------------------------------------
5 #
6 # Steering script for the global-fit-of-global-fits procedure of the D0ORCA010 (100) detector.
7 #
8 # --------------------------------------------------------------------------------------------
9 
10 if [ -z $JPP_DIR ]; then
11  echo "Variable JPP_DIR undefined."
12  exit
13 fi
14 
15 source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null
16 
17 set_variable DETECTOR_ID 100
18 set_array RUNS 11342 11345 11347 11374 11376
19 
20 if do_usage $*; then
21  usage "$script <detector file> <tripod file> [user directory]"\
22  "\nThe user directory should be specified when this script is submitted in a batch queue."\
23  "\nThe detector file and tripod file correspond to a pre-calibrated D_ORCA006 detector."
24 fi
25 
26 set_variable WORKDIR `pwd`
27 set_variable HOMEDIR $WORKDIR
28 
29 case $# in
30  3) set_variable HOMEDIR $3;&
31  2) set_variable TRIPOD $2;
32  set_variable DETECTOR $1;;
33  *) fatal "Wrong number of arguments."
34 esac
35 
36 set_variable TRIPOD_INITIAL tripod_initial.txt
37 set_variable DETECTOR_INITIAL detector_initial.datx
38 expand_array RUNS
39 
40 
41 # Run in HOMEDIR
42 
43 mkdir -p $HOMEDIR
44 
45 cd $HOMEDIR
46 
47 if [[ ! -f $DETECTOR_INITIAL ]]; then
48 
49  JDetectorDB \
50  -D $DETECTOR_ID \
51  -r $RUNS[1] \
52  -WW \
53  -o $DETECTOR_INITIAL
54 fi
55 
56 if [[ ! -f $TRIPOD_INITIAL ]]; then
57 
58  cat>$TRIPOD_INITIAL<<EOF
59 # Very preliminary acoustic emitter positions from survey
60 2 +256815.500 +4743395.000 -2436.677
61 3 +257096.200 +4743636.000 -2439.354
62 4 +256919.238 +4743354.178 -2439.354
63 EOF
64 fi
65 
66 eval `JPrintDetector -a $DETECTOR_INITIAL -O SUMMARY`; FINAL_STRINGS=($STRINGS[*])
67 eval `JPrintDetector -a $DETECTOR -O SUMMARY`; FIXED_STRINGS=($STRINGS[*])
68 
69 if [[ ! -f detector.datx ]]; then
70 
71  # Apply modifications.
72 
73  JEditDetector \
74  -a $DETECTOR_INITIAL \
75  -o detector.datx
76 
77  JEditDetector -a detector.datx -r "$FIXED_STRINGS[*]" -o detector.datx
78  JMergeDetector -a detector.datx -a $DETECTOR -o detector.datx
79  JEditDetector -a detector.datx -k "$FINAL_STRINGS[*]" -o detector.datx
80 fi
81 
82 source JAcousticsToolkit.sh
83 
84 typeset -A TRIPODS
85 
86 get_tripods $TRIPOD_INITIAL TRIPODS; FINAL_TRIPODS=(${(k)TRIPODS[*]})
87 get_tripods $TRIPOD TRIPODS; FIXED_TRIPODS=(${(k)TRIPODS[*]})
88 
89 if [[ ! -f tripod.txt ]]; then
90 
91  cp -p $TRIPOD_INITIAL tripod.txt
92 
93  JEditTripod -f tripod.txt -r "${FIXED_TRIPODS}" -o tripod.txt
94  JMergeTripod -f tripod.txt -f $TRIPOD -o tripod.txt
95  JEditTripod -f tripod.txt -k "${FINAL_TRIPODS}" -o tripod.txt
96 fi
97 
98 set_variable DETECTOR detector.datx
99 set_variable TRIPOD tripod.txt
100 
101 echo Fixed strings: $FIXED_STRINGS[*]
102 echo Fixed tripods: $FIXED_TRIPODS[*]
103 
104 JAcoustics.sh $DETECTOR_ID
105 
106 cat>acoustics_trigger_parameters.txt<<EOF
107 Q = 0.0;
108 TMax_s = 0.015;
109 quantile = 0.9;
110 numberOfHits = 150;
111 EOF
112 
113 JAcousticsEventBuilder.sh $DETECTOR $RUNS[*]
114 
115 INPUT_FILES=(`ls KM3NeT_${(l:8::0::0:)DETECTOR_ID}_0*${^RUNS}_event.root`)
116 
117 
118 # Run in WORKDIR
119 
120 cd $WORKDIR
121 
122 if [ ! $HOMEDIR -ef $WORKDIR ]; then
123  cp -p $HOMEDIR/$DETECTOR $WORKDIR
124  cp -p $HOMEDIR/$TRIPOD $WORKDIR
125  cp -p $HOMEDIR/${^INPUT_FILES} $WORKDIR
126  cp -p $HOMEDIR/{acoustics_fit_parameters,acoustics_trigger_parameters,disable,hydrophone,mechanics,sound_velocity,tripod,waveform}.txt \ $WORKDIR
127 fi
128 
129 source $JPP_DIR/examples/JAcoustics/acoustics-fit-toolkit.sh
130 
131 JConvertDetectorFormat -a $DETECTOR -o $HOMEDIR/detector_backup.datx
132 JDetachPMTs -a $DETECTOR -o $DETECTOR
133 
134 timer_start
135 
136 initialise
137 
138 fixStrings $FIXED_STRINGS[*]
139 fixTripods $FIXED_TRIPODS[*]
140 
141 stage_0 0.5 10 >& stage-0.log; backup $HOMEDIR/0; timer_lap
142 stage_1B 0.002 0.1 0 >& stage-1B.log; backup $HOMEDIR/1B; timer_lap
143 stage_2a 0.2 0.5 20 >& stage-2A.log; backup $HOMEDIR/2A; timer_lap
144 stage_2b 0.2 20 >& stage-2B.log; backup $HOMEDIR/2B; timer_lap
145 
146 initialise
147 
148 stage_2a 0.2 0.5 20 >& stage-2a.log; backup $HOMEDIR/2a; timer_lap
149 stage_2b 0.2 20 >& stage-2b.log; backup $HOMEDIR/2b; timer_lap
150 stage_3a 0.2 0.5 20 >& stage-3a.log; backup $HOMEDIR/3a; timer_lap
151 stage_3b 0.2 20 >& stage-3b.log; backup $HOMEDIR/3b; timer_lap
152 
153 if [ ! $HOMEDIR -ef $WORKDIR ]; then
154  cp -vru * $HOMEDIR
155 fi
156 
157 clean
158 
159 JAttachPMTs -a $DETECTOR -f $HOMEDIR/detector_backup.datx -o $DETECTOR
160 
161 rm -f $HOMEDIR/detector_backup.datx
162 
TRIPOD
&set_variable TRIPOD
Definition: pre-calibration_00000094.sh:32
k
then fatal No hydrophone data file $HYDROPHONE_TXT fi sort gr k
Definition: hydrophone-phi:fit.sh:35
Q
Q(UTCMax_s-UTCMin_s)-livetime_s
cat
then JLigier sh continue fi cat
Definition: JDAQDriver.sh:51
f
o $QUALITY_ROOT d $DEBUG!JPlot1D f
Definition: JDataQuality.sh:66
exit
exit
Definition: JPizza.sh:36
tripods
then fatal Number of tripods
Definition: JFootprint.sh:45
strings
then usage $script< detector specific pre-calibration script >< option > nAuxiliary script to make scan of pre stretching of detector strings(see JEditDetector)." "\nPossible options
Definition: acoustics-Zmul.sh:20
JTOOLS::r
data_type r[M+1]
Definition: JPolint.hh:779
o
then fatal Wrong number of arguments fi JConvertDetectorFormat a o
Definition: compare-detector.sh:31
get_tripods
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null if do_usage *then usage source $script nToolkit for acoustics scripts fi function get_tripods()
Definition: JAcousticsToolkit.sh:29
echo
then echo
Definition: JDOMDAQDriver.sh:56
$STRINGS
do JCanberra a $DETECTOR f $INPUT_FILE o $WORKDIR canberra[${EMITTER}\] root T $WORKDIR tripod txt V $WORKDIR sound_velocity txt M $WORKDIR mechanics txt H $WORKDIR hydrophone txt E $EMITTER $DISABLE d $DEBUG!done kill_child_processes_at_exit attach getModule a $DETECTOR typeset Z STRING typeset Z FLOOR for STRING in $STRINGS[*]
Definition: JCanberra.sh:68
timer_start
then timer_start(JRandomTimesliceWriter-a ${DETECTOR}-o ${PIPE}-n ${NUMBER_OF_SLICES}-P ${PMT_FILE}-d ${DEBUG}-S ${SEED}-B"$BACKGROUND_HZ"-N"$RECYCLING"--!&&for((i=0;$i!=10;++i));do;echo 'EOF' > $PIPE;usleep 100000;done &&rm-f $PIPE)&JTimesliceReprocessor-a $
Definition: JTimesliceReprocessor.sh:57
KM3NeT_
do JPrintDAQHeader f $INPUT_FILE d read DETECTOR_ID RUN FRAME_INDEX TIMESLICE_START set_variable OUTPUT_FILE $WORKDIR KM3NeT_
Definition: JTunePMTThreshold.sh:52
DETECTOR_ID
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null if do_usage *then usage $script< detector identifier > fi case set_variable DETECTOR_ID
Definition: JTDC.sh:11
$RUNS
then fatal Detector file should be binary format fi eval JPrintDetector a $DETECTOR O IDENTIFIER typeset a INPUT_FILES for RANGE in $RUNS[*]
Definition: software/JCompass/JCompass.sh:47
set_variable
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable
Definition: JAcoustics.sh:21
clean
case $OPTION in clean clean
Definition: getMIIseacurrent.sh:66
RUNS
do debug $__line__ echo $__line__ read URL DETECTOR RUNS RUNS
Definition: archive-put-Detectors.sh:68
WORKDIR
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DEBUG set_variable WORKDIR
Definition: JLegolas.sh:20
usage
* usage
Definition: JLigier-local.sh:34
INPUT_FILES
do sput $STRING $FLOOR sget MODULE INPUT_FILES
Definition: JCanberra.sh:77
HOMEDIR
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DETECTOR_ID set_array RUNS set_variable MUL if do_usage *then usage $script< detector file >< tripodfile > nThe user directory should be specified when this script is submitted in a batch queue nThe detector file and tripod file correspond to a pre calibrated D0ARCA006 detector fi set_variable WORKDIR pwd set_variable HOMEDIR $WORKDIR case set_variable HOMEDIR
Definition: pre-calibration_00000094.sh:21
$HOMEDIR
backup $HOMEDIR
Definition: pre-calibration_00000049.sh:125
a
then JCalibrateToT a
Definition: JTuneHV.sh:116
$DETECTOR
then set_variable MODULE getModule a $DETECTOR L $STRING $FLOOR JEditDetector a $DETECTOR M $MODULE add $X o $DETECTOR else echo No update of detector $DETECTOR
Definition: module-Z:fit.sh:118
Run
then error Missing CDF files error Run
Definition: JSirene.sh:58
$WORKDIR
then display $WORKDIR
Definition: plot-Domino.sh:128
cp
then cp
Definition: darkroomCalibration.sh:41
DETECTOR
set_variable DETECTOR
Definition: JARCACalibrateMuon.sh:31
detector
do set_variable DETECTOR_TXT $WORKDIR detector
Definition: detector-XY:fit1d.sh:38
in
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY JAcoustics sh $DETECTOR_ID source JAcousticsToolkit sh CHECK_EXIT_CODE typeset A EMITTERS get_tripods $WORKDIR tripod txt EMITTERS get_transmitters $WORKDIR transmitter txt EMITTERS for EMITTER in
Definition: JCanberra.sh:46
A
source $JPP_DIR setenv csh $JPP_DIR &dev null eval JShellParser o a A
Definition: JShellParser.csh:15
script
script
Definition: JAcoustics.sh:2
D
do echo Generating $dir eval D
Definition: JDrawLED.sh:53
$TRIPOD
then fatal Invalid tripod $TRIPOD
Definition: tripod-XY:run.sh:39
null
esac $JPP_BIN JLogger sh $LOGGER until pgrep JGetMessage</dev/null > dev null
Definition: examples/JLogger/JLogger.sh:33
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