JPlatypus.sh

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#!/bin/zsh
script=${0##*/}

if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi

source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null

set_variable:  DEBUG    ACOUSTICS_DEBUG    0
set_variable:  WORKDIR  ACOUSTICS_WORKDIR  ./
set_variable:  THREADS  ACOUSTICS_THREADS  5

if do_usage $*; then
    usage "$script <detector file> (input file)+"\
          "\nAuxiliary script to process acoustic data for dynamic position calibration."\
          "\nInput file corresponds to the output of JFremantle[.sh]."
fi

if (( $# != 2 )); then
    fatal "Wrong number of arguments."
fi

set_variable  DETECTOR            $argv[1]
set_array     INPUT_FILES         $argv[2,-1]

eval `JPrintDetector -a $DETECTOR -O IDENTIFIER`

JAcoustics.sh   $DETECTOR_ID

CHECK_EXIT_CODE

timer_start

{{ JPlatypus \
       -a $DETECTOR                              \
       -f "$INPUT_FILES[*]"                      \
       -T $WORKDIR/tripod.txt                    \
       -Y $WORKDIR/transmitter.txt               \
       -V $WORKDIR/sound_velocity.txt            \
       -M $WORKDIR/mechanics.txt                 \
       -@ $WORKDIR/acoustics_fit_parameters.txt  \
       -N $THREADS                               \
       -d $DEBUG 3>&1 1>&4 } | read RESULT } 4>&1

timer_stop
timer_print

echo "Result <$RESULT>"