Jpp  18.3.1
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pre-calibration_D1ORCA011.sh
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1 #!/bin/zsh
2 script=${0##*/}
3 
4 # --------------------------------------------------------------------------------------------
5 #
6 # Steering script for the global-fit-of-global-fits procedure of the D1ORCA011 (132) detector.
7 #
8 # --------------------------------------------------------------------------------------------
9 
10 if [ -z $JPP_DIR ]; then
11  echo "Variable JPP_DIR undefined."
12  exit
13 fi
14 
15 source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null
16 
17 set_variable DETECTOR_ID 132
18 set_array RUNS 14410 14411 14412 14413 14414 14415 14416 14417
19 set_variable: THREADS ACOUSTICS_THREADS 5
20 
21 if do_usage $*; then
22  usage "$script <source directory> [user directory]"\
23  "\nThe source directory corresponds to a pre-calibrated D0ORCA010 detector."\
24  "\nThe user directory should be specified when this script is submitted in a batch queue."
25 fi
26 
27 set_variable WORKDIR `pwd`
28 set_variable HOMEDIR $WORKDIR
29 
30 case $# in
31  2) set_variable HOMEDIR $2;&
32  1) set_variable DIR ${1:a};;
33  *) fatal "Wrong number of arguments."
34 esac
35 
36 
37 set_variable DETECTOR $DIR/detector.datx
38 set_variable TRIPOD $DIR/tripod.txt
39 set_variable DETECTOR_INITIAL detector_initial.datx
40 set_variable TRIPOD_INITIAL tripod_initial.txt
41 expand_array RUNS
42 
43 
44 # Run in HOMEDIR
45 
46 mkdir -p $HOMEDIR
47 
48 cd $HOMEDIR
49 
50 if [[ ! -f $DETECTOR_INITIAL ]]; then
51 
52  JDetectorDB \
53  -D $DETECTOR_ID \
54  -r $RUNS[1] \
55  -WW \
56  -o $DETECTOR_INITIAL
57 fi
58 
59 if [[ ! -f $TRIPOD_INITIAL ]]; then
60 
61  cat>$TRIPOD_INITIAL<<EOF
62 # position of emitter 3 taken from /pbs/throng/km3net/detectors/KMNeT_00000100_20220310.tripod.txt
63 # position of emitter 5 taken from https://elog.km3net.de/Operations+FR/8271 (RAB1v2)
64 # position of emitter 6 taken from https://elog.km3net.de/Operations+FR/8731 (RAB2)
65 3 +257097.050 +4743636.700 -2440.300
66 5 +257040.800 +4743317.600 -2439.900
67 6 +256807.500 +4743636.500 -2442.500
68 EOF
69 fi
70 
71 JEditDetector \
72  -a $DETECTOR \
73  -r "11 18 19" \
74  -o detector_tmp.datx --!
75 
76 eval `JPrintDetector -a $DETECTOR_INITIAL -O SUMMARY`; FINAL_STRINGS=($STRINGS[*])
77 eval `JPrintDetector -a detector_tmp.datx -O SUMMARY`; FIXED_STRINGS=($STRINGS[*])
78 
79 if [[ ! -f detector.datx ]]; then
80 
81  # Apply modifications.
82 
83  JEditDetector \
84  -a $DETECTOR_INITIAL \
85  -o detector.datx --!
86 
87  JEditDetector -a detector.datx -r "$FIXED_STRINGS[*]" -o detector.datx --!
88  JMergeDetector -a detector.datx -a detector_tmp.datx -o detector.datx --!
89  JEditDetector -a detector.datx -k "$FINAL_STRINGS[*]" -o detector.datx --!
90 
91  JEditDetector \
92  -a detector.datx \
93  -M "817351722 swap 15 17" \
94  -o detector.datx --!
95 fi
96 
97 source JAcousticsToolkit.sh
98 
99 typeset -A TRIPODS
100 
101 get_tripods $TRIPOD_INITIAL TRIPODS; FINAL_TRIPODS=(${(k)TRIPODS[*]})
102 get_tripods $TRIPOD TRIPODS; FIXED_TRIPODS=(${(k)TRIPODS[*]})
103 
104 if [[ ! -f tripod.txt ]]; then
105 
106  cp -p $TRIPOD_INITIAL tripod.txt
107 
108  JEditTripod -f tripod.txt -r "${FIXED_TRIPODS}" -o tripod.txt
109  JMergeTripod -f tripod.txt -f $TRIPOD -o tripod.txt
110  JEditTripod -f tripod.txt -k "${FINAL_TRIPODS}" -o tripod.txt
111 fi
112 
113 set_variable DETECTOR detector.datx
114 set_variable TRIPOD tripod.txt
115 
116 echo Fixed strings: $FIXED_STRINGS[*]
117 echo Fixed tripods: $FIXED_TRIPODS[*]
118 
119 JAcoustics.sh $DETECTOR_ID
120 
121 cat>acoustics_trigger_parameters.txt<<EOF
122 Q = 0.0;
123 TMax_s = 0.015;
124 numberOfHits = 150;
125 EOF
126 
127 cat>disable.txt<<EOF
128 # disable transmissions
129 # <emitter identifier> <module identifier>
130 # all emit. and ORCA.0003.16
131 # emitter 3 and ORCA.0001.12
132 -1 808966194
133  3 809503416
134 EOF
135 
136 JAcousticsEventBuilder.sh $DETECTOR $RUNS[*]
137 
138 INPUT_FILES=(`ls KM3NeT_${(l:8::0::0:)DETECTOR_ID}_0*${^RUNS}_event.root`)
139 
140 
141 # Run in WORKDIR
142 
143 cd $WORKDIR
144 
145 if [ ! $HOMEDIR -ef $WORKDIR ]; then
146  cp -p $HOMEDIR/$DETECTOR $WORKDIR
147  cp -p $HOMEDIR/${^ACOUSTICS_KEYS}.txt $WORKDIR
148  cp -p $HOMEDIR/${^INPUT_FILES} $WORKDIR
149 fi
150 
151 cat>script.txt<<EOF
152 
153 fix string $FIXED_STRINGS[*]
154 fix tripod $FIXED_TRIPODS[*]
155 
156 stage 0 1 0 100.0e-6 10.0 10 0.5
157 stage 1B 1 0 100.0e-6 10.0 0 0.001 0.1
158 stage 2A 1 0 100.0e-6 10.0 20 0.2 0.5
159 stage 2C 1 0 100.0e-6 10.0 20 0.2
160 
161 initialise
162 
163 stage 2a 1 0 100.0e-6 10.0 20 0.2 0.5
164 stage 2c 1 0 100.0e-6 10.0 20 0.2
165 stage 3a 1 0 50.0e-6 10.0 20 0.2 0.5
166 stage 3c 1 0 50.0e-6 10.0 20 0.2
167 EOF
168 
169 JSydney.sh $DETECTOR $INPUT_FILES[*] script.txt
170 
171 if [ ! $HOMEDIR -ef $WORKDIR ]; then
172  cp -vru * $HOMEDIR
173 fi
k
then fatal No hydrophone data file $HYDROPHONE_TXT fi sort gr k
Definition: hydrophone-phi:fit.sh:35
Q
Q(UTCMax_s-UTCMin_s)-livetime_s
stage
$WORKDIR stage
Definition: pre-calibration.sh:45
cat
then JLigier sh continue fi cat
Definition: JDAQDriver.sh:51
DETECTOR_ID
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O SUMMARY JPrintDAQHeader f $INPUT_FILE read A DAQ_HEADER set_variable DETECTOR_ID
Definition: JSquid.sh:28
f
o $QUALITY_ROOT d $DEBUG!CHECK_EXIT_CODE JPlot1D f
Definition: JDataQuality.sh:76
exit
exit
Definition: JPizza.sh:36
tripods
then fatal Number of tripods
Definition: JFootprint.sh:45
strings
then usage $script< detector specific pre-calibration script >< option > nAuxiliary script to make scan of pre stretching of detector strings(see JEditDetector)." "\nPossible options
Definition: acoustics-Zmul.sh:20
JTOOLS::r
data_type r[M+1]
Definition: JPolint.hh:868
RUNS
&set_variable RUNS
Definition: datalogs.sh:21
then
then
Definition: datalogs.sh:31
$DETECTOR_ID
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable TRIPOD $argv[2] set_array INPUT_FILES $argv[3,-1] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O CAN JAcoustics sh $DETECTOR_ID
Definition: footprint.sh:38
DIR
then fatal Wrong number of arguments fi DIR
Definition: acoustics-diff.sh:28
o
then fatal Wrong number of arguments fi JConvertDetectorFormat a o
Definition: software/JDetector/compare-detector.sh:31
$STRINGS
do JCanberra a $DETECTOR f $INPUT_FILE o $WORKDIR canberra[${EMITTER}\] root T $WORKDIR tripod txt V $WORKDIR sound_velocity txt M $WORKDIR mechanics txt H $WORKDIR hydrophone txt E $EMITTER $DISABLE d $DEBUG!done kill_child_processes_at_exit attach getModule a $DETECTOR typeset Z STRING typeset Z FLOOR for STRING in $STRINGS[*]
Definition: JCanberra.sh:70
JPHYSICS::C
static const double C
Physics constants.
Definition: JPhysics/JConstants.hh:25
KM3NeT_
do JPrintDAQHeader f $INPUT_FILE d read DETECTOR_ID RUN FRAME_INDEX TIMESLICE_START set_variable OUTPUT_FILE $WORKDIR KM3NeT_
Definition: JTunePMTThreshold.sh:52
$RUNS
then fatal Detector file should be binary format fi eval JPrintDetector a $DETECTOR O IDENTIFIER typeset a INPUT_FILES expand_array RUNS for RUN in $RUNS[*]
Definition: software/JCompass/JCompass.sh:49
set_variable
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable
Definition: JAcoustics.sh:21
a
then JCalibrateToT a
Definition: JTuneHV.sh:113
$INPUT_FILES
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR set_variable DEBUG set_variable WORKDIR if do_usage *then usage for INPUT_FILE in $INPUT_FILES[*]
Definition: JCheckTriggerParameters.sh:31
WORKDIR
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DEBUG set_variable WORKDIR
Definition: JLegolas.sh:20
usage
* usage
Definition: JLigier-local.sh:34
https
then fatal Timeout at user input fi set_variable SERVER JServerDB wget no check certificate q https
Definition: JCookie.sh:58
INPUT_FILES
do sput $STRING $FLOOR sget MODULE INPUT_FILES
Definition: JCanberra.sh:79
c
$WORKDIR ev_configure_dqsimulator txt echo process $DQ_SIMULATOR $i $SOURCE_HOST[$index] csh c(setenv ROOTSYS $ROOTSYS &&source $JPP_DIR/setenv.csh $JPP_DIR &&($DQ_SIMULATOR\-u\$NAME\$\-H\$SERVER\$\-M\$LOGGER\$\-d $DEBUG</dev/null > &/dev/null &))'
$WORKDIR
fi set_variable FILENAME $WORKDIR
Definition: datalogs.sh:34
in
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY JAcoustics sh $DETECTOR_ID source JAcousticsToolkit sh CHECK_EXIT_CODE typeset A EMITTERS get_tripods $WORKDIR tripod txt EMITTERS get_transmitters $WORKDIR transmitter txt EMITTERS for EMITTER in
Definition: JCanberra.sh:48
$DETECTOR
then set_variable MODULE getModule a $DETECTOR L $STRING $FLOOR JEditDetector a $DETECTOR M $MODULE add $X o $DETECTOR else echo No update of detector $DETECTOR
Definition: module-Z:fit.sh:118
Run
then error Missing CDF files error Run
Definition: JSirene.sh:58
cp
then cp
Definition: darkroomCalibration.sh:41
DETECTOR
set_variable DETECTOR
Definition: JARCACalibrateMuon.sh:31
detector
do set_variable DETECTOR_TXT $WORKDIR detector
Definition: detector-XY:fit1d.sh:38
echo
then echo
Definition: JQAQC.sh:90
HOMEDIR
then usage $script[user directory] nThe user directory should be specified when this script is submitted in a batch queue fi set_variable WORKDIR pwd set_variable HOMEDIR $WORKDIR case set_variable HOMEDIR
Definition: pre-calibration_D0ARCA006.sh:31
A
source $JPP_DIR setenv csh $JPP_DIR &dev null eval JShellParser o a A
Definition: JShellParser.csh:15
script
script
Definition: JAcoustics.sh:2
D
do echo Generating $dir eval D
Definition: JDrawLED.sh:53
$TRIPOD
then fatal Invalid tripod $TRIPOD
Definition: tripod-XY:run.sh:39
null
esac $JPP_BIN JLogger sh $LOGGER until pgrep JGetMessage</dev/null > dev null
Definition: examples/JLogger/JLogger.sh:33
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