JLight.sh

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#!/bin/zsh
#
# \author mdejong
#
version=1.0
script=${0##*/}

# ------------------------------------------------------------------------------------------
#
#                         Utility script to plot optical properties of sea water.
#
# ------------------------------------------------------------------------------------------


if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi


source $JPP_DIR/setenv.sh $JPP_DIR

set_variable   DEBUG       2      
set_variable   WORKDIR     ${TMPDIR:-/tmp}/  
set_variable   DIR         $JPP_DIR/examples/JSirene
set_variable:  FORMAT      GRAPHICS_FORMAT        gif
set_variable+  BATCH       GRAPHICS_BATCH         -B

if do_usage $*; then
    usage "$script [working directory]"
fi

case $# in
    1) set_variable  WORKDIR  $1;;
esac


OUTPUT_FILE=$WORKDIR/light.root

$DIR/JLight \
    -o $OUTPUT_FILE               


JPlot1D \
    -f ${OUTPUT_FILE}:pure                \
    -y "0 300"                            \
    -\> "#lambda [nm]"                    \
    -\^ "#lambda_{abs} [m]"               \
    -T ""                                 \
    -o pure.$FORMAT                       $BATCH


JPlot1D \
    -f ${OUTPUT_FILE}:abs                 \
    -y "0 100"                            \
    -\> "#lambda [nm]"                    \
    -\^ "#lambda_{abs} [m]"               \
    -L TR                                 \
    -o abs.$FORMAT                        $BATCH


JPlot1D \
    -f ${OUTPUT_FILE}:scat                \
    -y "0 150"                            \
    -\> "#lambda [nm]"                    \
    -\^ "#lambda_{scat} [m]"              \
    -L TR                                 \
    -o scat.$FORMAT                       $BATCH


JPlot1D \
    -f ${OUTPUT_FILE}:vp                  \
    -y "1.0 1.6"                          \
    -\> "#lambda [nm]"                    \
    -\^ "n_{phase}"                       \
    -L TR                                 \
    -o vp.$FORMAT                         $BATCH


JPlot1D \
    -f ${OUTPUT_FILE}:vg                  \
    -y "1.0 1.6"                          \
    -\> "#lambda [nm]"                    \
    -\^ "n_{group}"                       \
    -L TR                                 \
    -o vg.$FORMAT                         $BATCH


JPlot1D \
    -f ${OUTPUT_FILE}:Ps                  \
    -y "1e-2 20" -Y                       \
    -\> "cos(#theta)"                     \
    -\^ "d^{2}P/dcos(#theta)d#phi"        \
    -L TR                                 \
    -o Ps.$FORMAT                         $BATCH