pre-calibration_D0ARCA009.sh

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#!/bin/zsh
script=${0##*/}

# --------------------------------------------------------------------------------------------
#
# Steering script for the global-fit-of-global-fits procedure of the D0ARCA009 (94) detector.
#
# --------------------------------------------------------------------------------------------

if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi

source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null

set_variable  DETECTOR_ID            94
set_array     RUNS                   10360 10361 10363 10370 10390 10391 10411 10412
set_variable: MUL                    ACOUSTICS_MUL          -1.21e-2
set_variable: THREADS                ACOUSTICS_THREADS       5
set_variable  SINGULARITY            -
set_variable  WORKDIR                `pwd`
set_variable  HOMEDIR                $WORKDIR

if do_usage $*; then
    usage "$script <source directory> [user directory]"\
          "\nThe source directory corresponds to a pre-calibrated D0ARCA006 detector."\
          "\nThe user directory should be specified when this script is submitted in a batch queue."
fi

case $# in
    2)  set_variable HOMEDIR              $2;&
    1)  set_variable DIR                  ${1:a};;
    *)  fatal "Wrong number of arguments."
esac

source JAcousticsToolkit.sh

set_variable  DETECTOR               $DIR/detector.datx
set_variable  TRIPOD                 $DIR/tripod.txt
set_variable  DETECTOR_INITIAL       detector_initial.datx
set_variable  TRIPOD_INITIAL         tripod_initial.txt
expand_array  RUNS


# Run in HOMEDIR

mkdir -p $HOMEDIR
cd       $HOMEDIR

JDetectorDB \
    -D $DETECTOR_ID       \
    -@ "tcal = A03209429" \
    -@ "pcal = A03209525" \
    -@ "rcal = A03209511" \
    -V ""                 \
    -WW                   \
    -o $DETECTOR_INITIAL

cat>$TRIPOD_INITIAL<<EOF
# Very preliminary acoustic emitter positions from survey
3  +587848.700 +4016749.700 -3450.467
4  +587657.170 +4017113.940 -3459.600
5  +587906.500 +4017094.300 -3459.600
6  +586939.550 +4017018.130 -3447.020
7  +587198.628 +4016228.693 -3433.306
EOF

eval `JPrintDetector -a $DETECTOR_INITIAL -O SUMMARY`;  FINAL_STRINGS=($STRINGS[*])
eval `JPrintDetector -a $DETECTOR         -O SUMMARY`;  FIXED_STRINGS=($STRINGS[*])

# Apply modifications.

JEditDetector \
    -a $DETECTOR_INITIAL     \
    -s "-1 mul $MUL"         \
    -o detector.datx --!

eval `JPrintDetector -a detector.datx -O SUMMARY`

for STRING in ${STRINGS[*]}; do

    set_variable  MODULE  `getModule -a detector.datx -L "$STRING 0"`

    JEditDetector \
        -a detector.datx         \
        -M "$MODULE setz -11.7"  \
        -o detector.datx --!
done

JEditDetector   -a detector.datx  -r "$FIXED_STRINGS[*]"  -o detector.datx --!
JMergeDetector  -a detector.datx  -a $DETECTOR            -o detector.datx --!
JEditDetector   -a detector.datx  -k "$FINAL_STRINGS[*]"  -o detector.datx --!

typeset -A TRIPODS

get_tripods  $TRIPOD_INITIAL  TRIPODS;  FINAL_TRIPODS=(${(k)TRIPODS[*]})
get_tripods  $TRIPOD          TRIPODS;  FIXED_TRIPODS=(${(k)TRIPODS[*]})

cp -p  $TRIPOD_INITIAL  tripod.txt

JEditTripod   -f tripod.txt  -r "${FIXED_TRIPODS}" -o tripod.txt
JMergeTripod  -f tripod.txt  -f $TRIPOD            -o tripod.txt
JEditTripod   -f tripod.txt  -k "${FINAL_TRIPODS}" -o tripod.txt

cat>acoustics_trigger_parameters.txt<<EOF
Q             = 0.0;
TMax_s        = 0.020;
numberOfHits  = 120;
EOF

cat>disable.txt<<EOF
# disable transmissions
# $f4cf86ad-c521-44f1-aaab-9a8474b47d15$
# GIT 18.3.0-305-g4e82b04f4-D
# ROOT 6.30/02
# application JEditDisable
# command /data1/dejong/km3net/GIT/Jpp/out//Linux/bin//JEditDisable -f disable.log -o disable.log -a detector.datx -q -d 2 --!
# namespace KM3NET
# system Linux verster.lorentz.leidenuniv.nl 6.6.8-200.fc39.x86_64 #1 SMP PREEMPT_DYNAMIC Thu Dec 21 04:01:49 UTC 2023 x86_64
2 808470373
2 808961261
2 808964925
2 808976233
3 808430571
3 808447094
3 808451782
3 808470373
3 808474602
3 808961261
3 808964925
3 808971936
3 808976233
3 808978646
3 808981369
3 808985803
4 808474602
4 808961261
4 808964925
5 808447094
5 808451782
5 808976207
5 808976233
6 808447094
6 808964808
7 808961261
7 808976319
EOF

cat>transmitter.txt<<EOF
# $script
EOF

cat>hydrophone.txt<<EOF
# Data from D0ARCA009_hydrophones.csv
   9 -1  -0.57  -0.42   0.57
  10  0  -0.67   0.39   0.62
  11  0  -0.67   0.39   0.62
  13  0  -0.68  -0.37   0.62
  14  0  -0.20  -0.75   0.62
  18  0  -0.70  -0.34   0.62
  12  0  -0.12   0.76   0.62
  15  0  -0.72  -0.27   0.62
  19  0  -0.16  -0.76   0.62
EOF

JAcousticsEventBuilder.sh  detector.datx  $RUNS[*]

INPUT_FILES=(`ls KM3NeT_${(l:8::0::0:)DETECTOR_ID}_0*${^RUNS}_event.root`)

echo $INPUT_FILES[*]


# Run in WORKDIR

cd  $WORKDIR

if [ ! $HOMEDIR -ef $WORKDIR ]; then
    cp -p $HOMEDIR/$ACOUSTICS_DETECTOR     $WORKDIR
    cp -p $HOMEDIR/${^ACOUSTICS_KEYS}.txt  $WORKDIR
    cp -p $HOMEDIR/${^ACOUSTICS_AUXS}.txt  $WORKDIR
    cp -p $HOMEDIR/${^INPUT_FILES}         $WORKDIR
fi

cat>script.txt<<EOF

fix  string  $FIXED_STRINGS[*]
fix  tripod  $FIXED_TRIPODS[*]

stage   0  0                2  250.0e-6  10.0  20  0.5       
stage  1A  0                2  250.0e-6  10.0  20  0.5    0.5
stage  1B  0                2  250.0e-6  10.0   0  0.0005 0.2
stage  1C  ${SINGULARITY}2  0  250.0e-6  10.0  20  0.3       
stage  2A  ${SINGULARITY}2  0  100.0e-6  10.0  20  0.2    0.2
stage  2C  ${SINGULARITY}2  0  100.0e-6  10.0  20  0.2       

initialise

stage  2a  ${SINGULARITY}2  0  100.0e-6  10.0  20  0.2    0.2
stage  2c  ${SINGULARITY}2  0  100.0e-6  10.0  20  0.2       
stage  3a  ${SINGULARITY}2  0   50.0e-6  10.0  20  0.2    0.2
stage  3c  ${SINGULARITY}2  0   50.0e-6  10.0  20  0.2       
EOF

JSydney.sh  detector.datx  $INPUT_FILES[*]  script.txt

if [ ! $HOMEDIR -ef $WORKDIR ]; then
    cp -vru * $HOMEDIR
fi