pre-calibration_D0ORCA015.sh

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#!/bin/zsh
script=${0##*/}

# --------------------------------------------------------------------------------------------
#
# Steering script for the global-fit-of-global-fits procedure of the D0ORCA015 (138) detector.
#
# --------------------------------------------------------------------------------------------

if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi

source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null

set_variable  DETECTOR_ID            138
set_array     RUNS                   15458-15466
set_variable: THREADS                ACOUSTICS_THREADS       5
set_variable  SINGULARITY            -
set_variable  WORKDIR                `pwd`
set_variable  HOMEDIR                $WORKDIR

if do_usage $*; then
    usage "$script <source directory> [user directory]"\
          "\nThe source directory corresponds to a pre-calibrated D1ORCA011 detector."\
          "\nThe user directory should be specified when this script is submitted in a batch queue."
fi

case $# in
    2)  set_variable HOMEDIR              $2;&
    1)  set_variable DIR                  ${1:a};;
    *)  fatal "Wrong number of arguments."
esac

source JAcousticsToolkit.sh

set_variable  DETECTOR               $DIR/detector.datx
set_variable  TRIPOD                 $DIR/tripod.txt
set_variable  DETECTOR_INITIAL       detector_initial.datx
set_variable  TRIPOD_INITIAL         tripod_initial.txt
expand_array  RUNS


# Run in HOMEDIR

mkdir -p $HOMEDIR
cd       $HOMEDIR

JDetectorDB \
    -D $DETECTOR_ID       \
    -r $RUNS[1]           \
    -WW                   \
    -o $DETECTOR_INITIAL

cat>$TRIPOD_INITIAL<<EOF
# position of emitter 3 taken from /pbs/throng/km3net/detectors/KMNeT_00000100_20220310.tripod.txt
# position of emitter 5 taken from https://elog.km3net.de/Operations+FR/8271 (RAB1v2)
# position of emitter 6 taken from https://elog.km3net.de/Operations+FR/8731 (RAB2)
3  +257097.050 +4743636.700 -2440.300
5  +257040.800 +4743317.600 -2439.900 
6  +256807.500 +4743636.500 -2442.500
EOF

JEditDetector \
    -a $DETECTOR           \
    -o detector_tmp.datx --!

eval `JPrintDetector -a $DETECTOR_INITIAL -O SUMMARY`;  FINAL_STRINGS=($STRINGS[*])
eval `JPrintDetector -a detector_tmp.datx -O SUMMARY`;  FIXED_STRINGS=($STRINGS[*])

# Apply modifications.

JEditDetector \
    -a $DETECTOR_INITIAL     \
    -o detector.datx --!

eval `JPrintDetector -a detector.datx -O SUMMARY`

for STRING in ${STRINGS[*]}; do

    set_variable  MODULE  `getModule -a detector.datx -L "$STRING 0"`

    JEditDetector \
        -a detector.datx         \
        -M "$MODULE setz -2.9"   \
        -o detector.datx --!
done

JEditDetector   -a detector.datx  -r "$FIXED_STRINGS[*]"  -o detector.datx --!
JMergeDetector  -a detector.datx  -a detector_tmp.datx    -o detector.datx --!
JEditDetector   -a detector.datx  -k "$FINAL_STRINGS[*]"  -o detector.datx --!

typeset -A TRIPODS

get_tripods  $TRIPOD_INITIAL  TRIPODS;  FINAL_TRIPODS=(${(k)TRIPODS[*]})
get_tripods  $TRIPOD          TRIPODS;  FIXED_TRIPODS=(${(k)TRIPODS[*]})

cp -p  $TRIPOD_INITIAL  tripod.txt

JEditTripod   -f tripod.txt  -r "${FIXED_TRIPODS}" -o tripod.txt
JMergeTripod  -f tripod.txt  -f $TRIPOD            -o tripod.txt
JEditTripod   -f tripod.txt  -k "${FINAL_TRIPODS}" -o tripod.txt

cat>acoustics_trigger_parameters.txt<<EOF
Q             = 0.0;
TMax_s        = 0.015;
numberOfHits  = 200;
EOF

cat>disable.txt<<EOF
# disable transmissions
# $6387779b-094a-4993-a6fa-11298e2fda0d$
# GIT 18.3.0-305-g4e82b04f4-D
# ROOT 6.30/02
# application JEditDisable
# command /data1/dejong/km3net/GIT/Jpp/out//Linux/bin//JEditDisable -f disable.log -o disable.log -a detector.datx -q -d 2 --!
# namespace KM3NET
# system Linux verster.lorentz.leidenuniv.nl 6.6.8-200.fc39.x86_64 #1 SMP PREEMPT_DYNAMIC Thu Dec 21 04:01:49 UTC 2023 x86_64
1 809521500
2 808472260
2 808966194
2 808977319
3 808966194
3 813553576
5 806487231
5 808978694
6 817329086
EOF

cat>transmitter.txt<<EOF
# Data from D0ORCA015_baseAcousticBeacon.csv
 7   20  0   0.02  -0.97   0.71
EOF

cat>hydrophone.txt<<EOF
# Data from D0ORCA015_hydrophones.csv
   1 -1  -0.93   0.46   0.55
   2  0   0.02   1.04   0.55
   3  0   0.46   0.93   0.55
   9  0  -0.75  -0.72   0.55
  10 -1   0.11   1.04   0.55
  12  0   0.46   0.93   0.55
   4  0   0.20   1.02   0.55
  18  0   0.61   0.84   0.55
  28  0   0.69   0.78   0.55
  11  0  -0.07   1.04   0.55
  19  0   0.46   0.93   0.55
  20  0   0.61   0.84   0.55
  29  0   0.46   0.93   0.55
  30  0   0.46   0.93   0.55
  21  0   0.11   1.04   0.55
EOF

JAcousticsEventBuilder.sh  detector.datx  $RUNS[*]

INPUT_FILES=(`ls KM3NeT_${(l:8::0::0:)DETECTOR_ID}_0*${^RUNS}_event.root`)


# Run in WORKDIR

cd  $WORKDIR

if [ ! $HOMEDIR -ef $WORKDIR ]; then
    cp -p $HOMEDIR/$ACOUSTICS_DETECTOR     $WORKDIR
    cp -p $HOMEDIR/${^ACOUSTICS_KEYS}.txt  $WORKDIR
    cp -p $HOMEDIR/${^ACOUSTICS_AUXS}.txt  $WORKDIR
    cp -p $HOMEDIR/${^INPUT_FILES}         $WORKDIR
fi

cat>script.txt<<EOF

fix  string  $FIXED_STRINGS[*]
fix  tripod  $FIXED_TRIPODS[*]

stage  1B  ${SINGULARITY}1  0  100.0e-6  10.0   0  0.001  0.1
stage  2A  ${SINGULARITY}1  0  100.0e-6  10.0  20  0.2    0.5
stage  2C  ${SINGULARITY}1  0  100.0e-6  10.0  20  0.2       

initialise

stage  2a  ${SINGULARITY}1  0  100.0e-6  10.0  20  0.2    0.5
stage  2c  ${SINGULARITY}1  0  100.0e-6  10.0  20  0.2       
stage  3a  ${SINGULARITY}1  0   50.0e-6  10.0  20  0.2    0.5
stage  3c  ${SINGULARITY}1  0   50.0e-6  10.0  20  0.2       
EOF

JSydney.sh  detector.datx  $INPUT_FILES[*]  script.txt

if [ ! $HOMEDIR -ef $WORKDIR ]; then
    cp -vru * $HOMEDIR
fi