pre-calibration.sh

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#!/bin/zsh
script=${0##*/}
 
source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null
 
set_variable   DEBUG                    2
set_variable   WORKDIR                  `pwd`
set_variable   ACOUSTICS_THREADS        10
 
if do_usage $*; then
    usage "$script [version]"\
          "\nAuxiliary script to run pre-calibrations of all detectors,"\
          "\nincluding automatic disabling of 'bad' transmissions (see JAcousticsDisable.sh)."
fi
 
if (( $# == 1 )); then
    VERSION=${1}
else
    fatal "Wrong number of arguments."
fi
 
 
# -----------------------------------------------------------------------------------------------
# Run pre-calibration of given detector with optional inputs.
# The last directory corresponds to the current detector and
# the preceding directories to the input detectors.
#
# \param 1-N   directories
# -----------------------------------------------------------------------------------------------
fuction run()
{
    DETECTORS=($argv[1,-2])     
    DETECTOR=$argv[-1]
    
    DIR=$WORKDIR/${DETECTOR}.${VERSION}.A     # without disabled transmissions
    
    mkdir -p $DIR
    pushd    $DIR
 
    JMergeDisable -f$WORKDIR/${^DETECTORS}.${VERSION}.B/disable.txt -o disable.log
    #JMergeDisable -o disable.log
 
    # replace disabled transmissions by those of input detectors
 
    sed '/cat>disable.txt<<EOF/,/EOF/ccat>disable.txt<<EOF\n# disable transmissions\nEOF'  \
        $JPP_DIR/software/JAcoustics/pre-calibration_${DETECTOR}.sh                        >  pre-calibration_${DETECTOR}.sh
    sed -i '/disable transmissions/r disable.log'                                             pre-calibration_${DETECTOR}.sh
 
    chmod +x pre-calibration_${DETECTOR}.sh
 
    ./pre-calibration_${DETECTOR}.sh  $WORKDIR/${^DETECTORS}.${VERSION}.B  >&  pre-calibration.log
 
 
    # disable transmissions
 
    eval `JPrintDetector -a detector.datx -O IDENTIFIER`
 
    JAcousticsDisable.sh  detector.datx  KM3NeT_${(l:8::0::0:)DETECTOR_ID}_*_event.root  disable.log
 
    popd
    
 
    DIR=$WORKDIR/${DETECTOR}.${VERSION}.B     # with disabled transmissions
    
    mkdir -p $DIR
    pushd    $DIR
 
    cp $WORKDIR/${DETECTOR}.${VERSION}.A/disable.log .
 
    # introduce disabled transmissions
 
    sed '/cat>disable.txt<<EOF/,/EOF/ccat>disable.txt<<EOF\n# disable transmissions\nEOF'  \
        $JPP_DIR/software/JAcoustics/pre-calibration_${DETECTOR}.sh                        >  pre-calibration_${DETECTOR}.sh
    sed -i '/disable transmissions/r disable.log'                                             pre-calibration_${DETECTOR}.sh
 
    chmod +x pre-calibration_${DETECTOR}.sh
 
    ./pre-calibration_${DETECTOR}.sh  $WORKDIR/${^DETECTORS}.${VERSION}.B  >&  pre-calibration.log
 
    popd
}
 
 
# ORCA
 
run                        D_ORCA006
run  D_ORCA006             D0ORCA010
run  D0ORCA010             D1ORCA011
run  D1ORCA011             D0ORCA015
run  D0ORCA015             D1ORCA015
run  D1ORCA015             D0ORCA018
 
 
# ARCA
 
run                        D0ARCA006
run  D0ARCA006             D0ARCA009
run  D0ARCA009             D0ARCA021
run  D0ARCA021             D0ARCA028