software/JCompass/JCompass.sh

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#!/bin/zsh
#
#
# \author mdejong
#
version=1.0
script=${0##*/}
 
if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi
 
source $JPP_DIR/setenv.sh $JPP_DIR
 
set_variable:  DEBUG               COMPASS_DEBUG               2
set_variable:  WORKDIR             COMPASS_WORKDIR             ./
set_variable:  TMAX_S              COMPASS_TMAX_S              600
set_variable:  SIGMA_DEG           COMPASS_SIGMA_DEG           0.5
set_variable:  STDEV               COMPASS_STDEV               5.0
set_variable:  MESTIMATOR          COMPASS_MESTIMATOR          1
set_variable:  NUMBER_OF_OUTLIERS  COMPASS_NUMBER_OF_OUTLIERS  0
 
if do_usage $*; then
    usage "$script <detector file> (run[-run])+ <output file>"\
          "\nAuxiliary script for in situ compass calibration."
fi
 
if (( $# < 3 )); then
    fatal "Wrong number of parameters."
fi
 
set_variable     DETECTOR                $argv[1]
set_array        RUNS                    $argv[2,-2]
set_variable     OUTPUT_FILE             $argv[-1]
 
set_variable     AHRS_CALIBRATION_FILE   $WORKDIR/ahrs_calibration.txt
 
if [[ ! ${DETECTOR##*\.} == "datx" ]]; then
    fatal "Detector file should be binary format."
fi
 
eval `JPrintDetector -a $DETECTOR -O IDENTIFIER`
 
typeset -a  INPUT_FILES
 
expand_array  RUNS
 
for RUN in $RUNS[*]; do
 
    set_variable  INPUT_FILE   $WORKDIR/KM3NeT_${(l:8::0::0:)DETECTOR_ID}_${(l:8::0::0:)RUN}_ahrs.root
 
    if [[ ! -f $INPUT_FILE ]]; then
 
        echo -n "Writing $INPUT_FILE... "
        
        JConvertDB \
            -q "ahrs"                      \
            -@ "detid  = $DETECTOR_ID"     \
            -@ "minrun = $RUN"             \
            -@ "maxrun = $RUN"             \
            -o $INPUT_FILE                 \
            -d $DEBUG --
 
        if (( $? == 0 )); then
            echo "OK"
        else
            continue
        fi
    fi
 
    INPUT_FILES+=($INPUT_FILE)
done
 
if [[ ! -f $AHRS_CALIBRATION_FILE ]]; then
 
    JAHRSCalibration \
        -D $DETECTOR_ID                \
        -o $AHRS_CALIBRATION_FILE      \
        -d $DEBUG
fi
 
timer_start
 
JCompass \
    -a  $DETECTOR                                \
    -A                                           \
    -c  $AHRS_CALIBRATION_FILE                   \
    -f "$INPUT_FILES[*]"                         \
    -o  $OUTPUT_FILE                             \
    -@ "Tmax_s           = $TMAX_S"              \
    -@ "sigma_deg        = $SIGMA_DEG"           \
    -@ "stdev            = $STDEV"               \
    -@ "mestimator       = $MESTIMATOR"          \
    -@ "numberOfOutliers = $NUMBER_OF_OUTLIERS"  \
    -d  $DEBUG --!
 
timer_stop
timer_print