coelacanth.sh

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#!/bin/env zsh
#
# \author mdejong
#
script=${0##*/}
 
source $JPP_DIR/setenv.sh $JPP_DIR
 
set_variable  STDEV     10.0
 
if do_usage $*; then
    usage "$script (input file)+"
fi
 
if (( $# == 0 )); then
    fatal "Wrong number of arguments."
fi
 
set_array      INPUT_FILES       $argv[1,-1]
 
DETECTOR_ID=-1
 
RUNS=()
 
for INPUT_FILE in $INPUT_FILES[*]; do
 
    JPrintDAQHeader  -f $INPUT_FILE  |  read ID RUN FRAME_INDEX UTC    
 
    if   (( $DETECTOR_ID == -1  )); then
        DETECTOR_ID=$ID
    elif (( $DETECTOR_ID != $ID )); then
        fatal "Inconsistent detector identifier $DETECTOR_ID != $ID."
    fi
 
    RUNS+=($RUN)
done
 
set_variable   DETID         $(getDetector -D $DETECTOR_ID -O string)
set_variable   DETECTOR      $DETID.datx
 
if [[ ! -f $DETECTOR ]]; then
    JDetectorDB -D $DETID -r $RUNS[1] -o $DETECTOR
fi
 
for INPUT_FILE in $INPUT_FILES[*]; do
 
    JPrintDAQHeader  -f $INPUT_FILE  |  read ID RUN FRAME_INDEX UTC    
 
    echo "Processing $INPUT_FILE (1)"  >&  $DETID.$RUN.log
 
    rm -f ${DETID}.trigger.root        #>&  /dev/null
 
    JTriggerReprocessor \
        -a $DETECTOR                   \
        -f $INPUT_FILE                 \
        -US                            \
        -o ${DETID}.trigger.root       \
        -C -\.\*                       \
        -d1                            #>&  /dev/null
 
    JConvertDetectorFormat \
        -a $DETECTOR                   \
        -o ${DETID}.detector.datx      #>&  /dev/null
 
    JCoelacanth \
        -a ${DETID}.detector.datx      \
        -f $INPUT_FILE                 \
        -f ${DETID}.trigger.root       \
        -S $STDEV                      \
        -A                             \
        -d1                            >>& $DETID.$RUN.log
 
    echo "Processing $INPUT_FILE (2)"  >>& $DETID.$RUN.log
 
    rm -f ${DETID}.trigger.root        #>&  /dev/null
 
    JTriggerReprocessor \
        -a ${DETID}.detector.datx      \
        -f $INPUT_FILE                 \
        -US                            \
        -o ${DETID}.trigger.root       \
        -C -\.\*                       \
        -d0                            #>&  /dev/null
 
    JCoelacanth \
        -a ${DETID}.detector.datx      \
        -f $INPUT_FILE                 \
        -f ${DETID}.trigger.root       \
        -S $STDEV                      \
        -d1                            >>& $DETID.$RUN.log
 
    echo                               >>& $DETID.$RUN.log
done