badchannelMonitoring.sh

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#!/bin/zsh
#
#
# \author acreusot 
#
version=1.0
script=${0##*/}

# ------------------------------------------------------------------------------------------
#
#                         Utility script to list the bad channel and update the detx.
#
# ------------------------------------------------------------------------------------------
# 

 
if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi

source $JPP_DIR/setenv.sh $JPP_DIR

set_variable     DEBUG           1

if ( do_usage $* ); then
    usage "$script <data file> <detector file>"
fi

case $# in
        2)      set_variable    DETX            $2;
                set_variable    DATA            $1;;
        *) fatal "wrong number of arguments!";;
esac


if (( 1 )); then
        JCalibrateToT \
                -d $DEBUG \
                -f ${DATA} \
                -a ${DETX} \
                -C JDAQTimesliceL1 \
                -o ${DATA%.root}_calibrateToT.root
fi

TMP1=${DATA#*_}
TMP2=${TMP1#*_}
RUNNB=${TMP2%.root}
if (( 1 )); then
        JIntegrateToT \
                -d $DEBUG \
                -f ${DATA%.root}_calibrateToT.root \
                -o ${DATA%.root}_integrateToT.txt \
                -a ${DETX} \
                -r ${RUNNB}
fi

if (( 1 )); then
        JFindBadChannels        \
                -d $DEBUG       \
                -a ${DETX} \
                -f ${DATA%.root}_integrateToT.txt \
                -t 0.5 \
                -A
fi