JAddHDE.sh

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#!/bin/zsh
#
# \author jseneca
#
version=1.0
script=${0##*/}

# ------------------------------------------------------------------------------------------
#
#            Utility script to create histogram of particle light pattern
#
# ------------------------------------------------------------------------------------------

INPUT_FILES="J-11_11_22s_example.HDE J2212s_example.HDE";
OUTPUT_SUFFIX="example";

while getopts f:o:h option
do      case "$option" in
        f) INPUT_FILES="$OPTARG";;
        o) OUTPUT_SUFFIX="$OPTARG";;
        h) exit;;
    esac
done;

if [ -z $INPUT_FILES ]; then
    echo "Please pass data file."
    exit
fi

if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi

PARTICLES=""
PARTICLES_RE="J([-_[:digit:]]*?)s.*"
for FILE in "${(@s/ /)INPUT_FILES}"
do
    if [[ $FILE =~ $PARTICLES_RE ]]
    then        

        FILE_PARTICLES="${match[1]}"
        for particle in "${(@s/_/)FILE_PARTICLES}"
        do
            PARTICLES=${PARTICLES}${particle}_
        done
    fi
done
PARTICLES=${PARTICLES: 0: -1}

OUTPUT_FILE="J${PARTICLES}s_${OUTPUT_SUFFIX}.HDE"

source $JPP_DIR/setenv.sh $JPP_DIR

JAddHDE \
    -f $INPUT_FILES     \
    -o $OUTPUT_FILE