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JMakePDF.sh
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1 #!/bin/zsh
2 #
3 # \author mdejong
4 #
5 # utility script to produce PDF and CDF tables.
6 script=${0##*/}
7 
8 
9 # ------------------------------------------------------------------------------------------
10 #
11 # Utility script to produce PDF and CDF tables.
12 #
13 # ------------------------------------------------------------------------------------------
14 
15 if [ -z $JPP_DIR ]; then
16  echo "Variable JPP_DIR undefined."
17  exit
18 fi
19 
20 source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null
21 
22 set_variable DEBUG 2
23 set_variable WORKDIR $JPP_DATA
24 set_variable MAKE_PDF 0
25 set_variable MERGE_PDF 0
26 set_variable MAKE_CDF 0
27 set_variable CLEAN 0
28 set_variable BACKGROUND
29 set_variable WGET
30 set_variable RMAX_M 999
31 set_variable absorptionLengthFactor 1.0
32 set_variable scatteringLengthFactor 1.0
33 
34 # check whether script is already running
35 
36 BUFFER=`get_pid $script`
37 BUFFER=${BUFFER/${$}/}
38 
39 if [[ -n "${BUFFER/ */}" ]]; then
40  notice "${script} already running <${BUFFER}>"
41  exit 0
42 fi
43 
44 #
45 # Method to print usage of script.
46 #
47 function usage()
48 {
49  print -u2 "$script \n\
50  -d <debug level> \n\
51  -W <working directory PDF and CDF tables> \n\
52  -P create PDF tables \n\
53  -M merge PDF tables \n\
54  -C convert PDF tables to CDF tables \n\
55  -c clean PDF tables \n\
56  -B parallel running of jobs in background \n\
57  -w download files from git server \n\
58  -R <maximal distance between muon and PMT> \
59  "
60  exit
61 }
62 
63 #
64 # Parse command line options.
65 #
66 while getopts "d:W:PMCcBw:hA:S:R:" option; do
67  case "$option" in
68  d) set_variable DEBUG $OPTARG;;
69  W) set_variable WORKDIR $OPTARG;;
70  P) set_variable MAKE_PDF 1;;
71  M) set_variable MERGE_PDF 1;;
72  C) set_variable MAKE_CDF 1;;
73  c) set_variable CLEAN 1;;
74  B) set_variable BACKGROUND \&;;
75  w) set_variable WGET $OPTARG;;
76  h) usage; exit;;
77  A) set_variable absorptionLengthFactor $OPTARG;;
78  S) set_variable scatteringLengthFactor $OPTARG;;
79  R) set_variable RMAX_M $OPTARG;;
80  esac
81 done
82 
83 check_variable ROOTSYS JPP_DIR WORKDIR
84 
85 mkdir -p $WORKDIR
86 
87 status "Start $script"
88 
89 
90 if [[ -n $WGET ]]; then
91  cd $WORKDIR
92  rm -f *.dat
93  wget -A dat,txt,root,evt.gz -r -l 1 -nd -q $WGET
94 fi
95 
96 
97 if (( $MAKE_PDF )); then
98 
99  check_process JMakePDF JMakePDG
100 
101  if (( 1 )); then
102 
103  if [[ ! -f $WORKDIR/J1p.dat ]]; then
104  eval nohup JMakePDF -F1 -A $absorptionLengthFactor -S $scatteringLengthFactor -o $WORKDIR/J1p.dat -d $DEBUG $BACKGROUND
105  fi
106  if [[ ! -f $WORKDIR/J2p.dat ]]; then
107  eval nohup JMakePDF -F2 -A $absorptionLengthFactor -S $scatteringLengthFactor -o $WORKDIR/J2p.dat -d $DEBUG $BACKGROUND
108  fi
109 
110  for R in 0.1 0.3 0.5 1.0 2.0 3.0 4.0 5.0 6.0 7.0 8.0 9.0 10.0 \
111  11.0 12.0 13.0 14.0 15.0 16.0 17.0 18.0 19.0 20.0 \
112  22.0 24.0 26.0 28.0 30.0 32.0 34.0 36.0 38.0 40.0 42.0 44.0 46.0 48.0 50.0 \
113  55.0 60.0 65.0 70.0 75.0 80.0 85.0 90.0 95.0 100.0 110.0 120.0 130.0 140.0 150.0 \
114  170.0 190.0 210.0 230.0 250.0 270.0 290.0 310.0; do
115 
116  if (( $R <= $RMAX_M )); then
117 
118  if [[ ! -f $WORKDIR/J3p.dat ]]; then
119  eval nohup JMakePDF -F3 -A $absorptionLengthFactor -S $scatteringLengthFactor -R $R -o $WORKDIR/J3p-$R.dat -d $DEBUG $BACKGROUND
120  fi
121  if [[ ! -f $WORKDIR/J4p.dat ]]; then
122  eval nohup JMakePDF -F4 -A $absorptionLengthFactor -S $scatteringLengthFactor -R $R -o $WORKDIR/J4p-$R.dat -d $DEBUG $BACKGROUND
123  fi
124  fi
125  done
126 
127  if [[ ! -f $WORKDIR/J5p.dat ]]; then
128  eval nohup JMakePDF -F5 -A $absorptionLengthFactor -S $scatteringLengthFactor -o $WORKDIR/J5p.dat -d $DEBUG $BACKGROUND
129  fi
130 
131  for R in 0.1 0.3 0.5 1.0 2.0 3.0 4.0 5.0 6.0 7.0 8.0 9.0 10.0 \
132  11.0 12.0 13.0 14.0 15.0 16.0 17.0 18.0 19.0 20.0 \
133  22.0 24.0 26.0 28.0 30.0 32.0 34.0 36.0 38.0 40.0 42.0 44.0 46.0 48.0 50.0 \
134  55.0 60.0 65.0 70.0 75.0 80.0 85.0 90.0 95.0 100.0 110.0 120.0 130.0 140.0 150.0 \
135  170.0 190.0 210.0 230.0 250.0; do
136 
137  if (( $R <= $RMAX_M )); then
138 
139  if [[ ! -f $WORKDIR/J6p.dat ]]; then
140  eval nohup JMakePDF -F6 -A $absorptionLengthFactor -S $scatteringLengthFactor -R $R -o $WORKDIR/J6p-$R.dat -d $DEBUG $BACKGROUND
141  fi
142  fi
143  done
144 
145  if [[ ! -f $WORKDIR/J13p.dat ]]; then
146  eval nohup JMakePDG -F13 -A $absorptionLengthFactor -S $scatteringLengthFactor -o $WORKDIR/J13p.dat -d $DEBUG $BACKGROUND
147  fi
148 
149  let DMAX_M="${RMAX_M}*1.5"
150 
151  for D in 0.1 0.5 1.0 5.0 10.0 20.0 30.0 40.0 50.0 60.0 70.0 80.0 90.0 100.0 \
152  120.0 150.0 170.0 190.0 210.0 230.0 250.0 270.0 290.0 310.0 \
153  340.0 370.0 400.0 430.0 460.0 490.0 520.0 550.0 600.0 650.0 700.0 750.0 800.0; do
154 
155  if (( $D <= $DMAX_M )); then
156  if [[ ! -f $WORKDIR/J14p.dat ]]; then
157  eval nohup JMakePDG -F14 -A $absorptionLengthFactor -S $scatteringLengthFactor -D $D -o $WORKDIR/J14p-$D.dat -d $DEBUG $BACKGROUND
158  fi
159  fi
160  done
161 
162  if [[ ! -f $WORKDIR/J23p.dat ]]; then
163  eval nohup JMakePD0 -F23 -A $absorptionLengthFactor -S $scatteringLengthFactor -o $WORKDIR/J23p.dat -d $DEBUG $BACKGROUND
164  fi
165  if [[ ! -f $WORKDIR/J24p.dat ]]; then
166  eval nohup JMakePD0 -F24 -A $absorptionLengthFactor -S $scatteringLengthFactor -o $WORKDIR/J24p.dat -d $DEBUG $BACKGROUND
167  fi
168  fi
169 
170 fi
171 
172 
173 if (( $MERGE_PDF )); then
174 
175  if [[ ! -f $WORKDIR/J3p.dat ]]; then
176 
177  FILE_LIST=`ls $WORKDIR/J3p-*.dat`
178 
179  JMergePDF -f $FILE_LIST -o $WORKDIR/J3p.dat -d $DEBUG
180  fi
181 
182  if [[ ! -f $WORKDIR/J4p.dat ]]; then
183 
184  FILE_LIST=`ls $WORKDIR/J4p-*.dat`
185 
186  JMergePDF -f $FILE_LIST -o $WORKDIR/J4p.dat -d $DEBUG
187  fi
188 
189  if [[ ! -f $WORKDIR/J6p.dat ]]; then
190 
191  FILE_LIST=`ls $WORKDIR/J6p-*.dat`
192 
193  JMergePDF -f $FILE_LIST -o $WORKDIR/J6p.dat -d $DEBUG
194  fi
195 
196  if [[ ! -f $WORKDIR/J14p.dat ]]; then
197 
198  FILE_LIST=`ls $WORKDIR/J14p-*.dat`
199 
200  JMergePDG -f $FILE_LIST -o $WORKDIR/J14p.dat -d $DEBUG
201  fi
202 fi
203 
204 
205 if (( $MAKE_CDF )); then
206 
207  check_process JMakeCDF JMakeCDG
208 
209  if [[ ! -f $WORKDIR/I1p.dat ]]; then
210  JMakeCDF -f $WORKDIR/J1p.dat -e 1e-5 -o $WORKDIR/I1p.dat -d $DEBUG
211  fi
212  if [[ ! -f $WORKDIR/I2p.dat ]]; then
213  JMakeCDF -f $WORKDIR/J2p.dat -e 1e-4 -o $WORKDIR/I2p.dat -d $DEBUG
214  fi
215  if [[ ! -f $WORKDIR/I5p.dat ]]; then
216  JMakeCDF -f $WORKDIR/J5p.dat -e 1e-5 -o $WORKDIR/I5p.dat -d $DEBUG
217  fi
218  if [[ ! -f $WORKDIR/I6p.dat ]]; then
219  JMakeCDF -f $WORKDIR/J6p.dat -e 1e-5 -o $WORKDIR/I6p.dat -d $DEBUG
220  fi
221  if [[ ! -f $WORKDIR/I13p.dat ]]; then
222  JMakeCDG -f $WORKDIR/J13p.dat -e 1e-5 -o $WORKDIR/I13p.dat -d $DEBUG
223  fi
224  if [[ ! -f $WORKDIR/I14p.dat ]]; then
225  JMakeCDG -f $WORKDIR/J14p.dat -e 1e-5 -o $WORKDIR/I14p.dat -d $DEBUG
226  fi
227 fi
228 
229 if (( $CLEAN )); then
230 
231  if ( rm -f $WORKDIR/J*p-*.dat ); then; fi
232 
233 fi
234 
235 status "End $script"
JTOOLS::w
data_type w[N+1][M+1]
Definition: JPolint.hh:741
D
do echo Generating $dir eval D
Definition: JDrawLED.sh:50
M
do $JPP JMEstimator M
Definition: JMEstimator.sh:37
root
then JPlot1D f $WORKDIR postfit[prefit\] root
Definition: JMuonPostfit.sh:138
absorptionLengthFactor
double absorptionLengthFactor
Scaling of absorption and scattering length.
Definition: JDrawPD0.cc:24
exit
exit
Definition: JPizza.sh:36
JTOOLS::r
data_type r[M+1]
Definition: JPolint.hh:742
f
then JPizza f
Definition: JPizza.sh:46
echo
then echo
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JPHYSICS::C
static const double C
Physics constants.
Definition: JPhysics/JConstants.hh:25
set_variable
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Definition: JAcoustics.sh:20
o
do $DIR JTransitTime o
Definition: JTransitTime.sh:44
usage
* usage
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print
print
Definition: JConvertDusj.sh:44
R
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR set_variable NORTH set_variable EAST set_variable SOUTH set_variable WEST set_variable WORKDIR tmp set_variable R set_variable CT set_variable YMAX set_variable YMIN if do_usage *then usage $script[distance] fi case set_variable R
Definition: JDrawLED.sh:35
S
do set_variable SIGMA_NS set_variable OUTLIERS set_variable OUTPUT_FILE matrix[${ALPHA_DEG}\deg\] root $JPP JMatrixNZ a $DETECTOR f $INPUT_FILE o $OUTPUT_FILE S
Definition: JMatrixNZ.sh:56
d
then JMuonMCEvt f $INPUT_FILE o $INTERMEDIATE_FILE d
Definition: JMuonPath.sh:45
$script
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR set_variable DEBUG set_variable WORKDIR if do_usage *then usage $script(input file)+" fi if (( $ fatal "Invalid number of arguments." fi JCookie.sh set_array INPUT_FILES $argv[1
n
alias put_queue eval echo n
Definition: qlib.csh:19
DEBUG
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Definition: JCalibratePMT.sh:21
scatteringLengthFactor
double scatteringLengthFactor
Definition: JDrawPD0.cc:25
$WORKDIR
then display $WORKDIR
Definition: plot-Domino.sh:127
BUFFER
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DEBUG set_variable WORKDIR $JPP_DATA set_variable MAKE_PDF set_variable MERGE_PDF set_variable MAKE_CDF set_variable CLEAN set_variable BACKGROUND set_variable WGET set_variable RMAX_M set_variable absorptionLengthFactor set_variable scatteringLengthFactor BUFFER
Definition: JMakePDF.sh:36
WORKDIR
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DEBUG set_variable WORKDIR tmp set_variable JDAQ_TIMESLICE JDAQTimeslice if do_usage *then usage $script< detector file >< inputfile > fi case set_variable WORKDIR
Definition: JLegolas.sh:23
in
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY source JAcoustics sh $DETECTOR_ID CHECK_EXIT_CODE typeset A TRIPODS get_tripods $WORKDIR tripod txt TRIPODS for EMITTER in
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script
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A
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null
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