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software/JCompass/JCompass.sh
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1 #!/bin/zsh
2 #
3 #
4 # \author mdejong
5 #
6 version=1.0
7 script=${0##*/}
8 
9 if [ -z $JPP_DIR ]; then
10  echo "Variable JPP_DIR undefined."
11  exit
12 fi
13 
14 source $JPP_DIR/setenv.sh $JPP_DIR
15 
16 set_variable: DEBUG COMPASS_DEBUG 2
17 set_variable: WORKDIR COMPASS_WORKDIR ./
18 set_variable: TMAX_S COMPASS_TMAX_S 600
19 set_variable: SIGMA_DEG COMPASS_SIGMA_DEG 0.5
20 set_variable: STDEV COMPASS_STDEV 5.0
21 set_variable: MESTIMATOR COMPASS_MESTIMATOR 1
22 set_variable: NUMBER_OF_OUTLIERS COMPASS_NUMBER_OF_OUTLIERS 0
23 
24 if do_usage $*; then
25  usage "$script <detector file> (run[-run])+ <output file>"\
26  "\nAuxiliary script for in situ compass calibration."
27 fi
28 
29 if (( $# < 3 )); then
30  fatal "Wrong number of parameters."
31 fi
32 
34 set_array RUNS $argv[2,-2]
35 set_variable OUTPUT_FILE $argv[-1]
36 
37 set_variable AHRS_CALIBRATION_FILE $WORKDIR/ahrs_calibration.txt
38 
39 if [[ ! ${DETECTOR##*\.} == "datx" ]]; then
40  fatal "Detector file should be binary format."
41 fi
42 
43 eval `JPrintDetector -a $DETECTOR -O IDENTIFIER`
44 
45 typeset -a INPUT_FILES
46 
47 for RANGE in $RUNS[*]; do
48 
49  for (( RUN = ${RANGE%%-*}; $RUN <= ${RANGE##*-}; RUN += 1 )); do
50 
51  set_variable INPUT_FILE $WORKDIR/KM3NeT_${(l:8::0::0:)DETECTOR_ID}_${(l:8::0::0:)RUN}_ahrs.root
52 
53  if [[ ! -f $INPUT_FILE ]]; then
54 
55  echo -n "Writing $INPUT_FILE... "
56 
57  JConvertDB \
58  -q "ahrs" \
59  -@ "detid = $DETECTOR_ID" \
60  -@ "minrun = $RUN" \
61  -@ "maxrun = $RUN" \
62  -o $INPUT_FILE \
63  -d $DEBUG --
64 
65  if (( $? == 0 )); then
66  echo "OK"
67  else
68  continue
69  fi
70  fi
71 
73 
74  done
75 done
76 
77 if [[ ! -f $AHRS_CALIBRATION_FILE ]]; then
78 
79  JAHRSCalibration \
80  -D $DETECTOR_ID \
81  -o $AHRS_CALIBRATION_FILE \
82  -d $DEBUG
83 fi
84 
86 
87 JCompass \
88  -a $DETECTOR \
89  -A \
90  -c $AHRS_CALIBRATION_FILE \
91  -f "$INPUT_FILES[*]" \
92  -o $OUTPUT_FILE \
93  -@ "Tmax_s = $TMAX_S" \
94  -@ "sigma_deg = $SIGMA_DEG" \
95  -@ "stdev = $STDEV" \
96  -@ "mestimator = $MESTIMATOR" \
97  -@ "numberOfOutliers = $NUMBER_OF_OUTLIERS" \
98  -d $DEBUG --!
99 
100 timer_stop
101 timer_print
set_array RUNS
*set_variable DETECTOR_ID $argv[1] set_array RUNS $argv[2,-2]
Definition: JDataQuality.sh:24
o $QUALITY_ROOT d $DEBUG!JPlot1D f
Definition: JDataQuality.sh:66
exit
Definition: JPizza.sh:36
then echo
const int n
Definition: JPolint.hh:676
then timer_start(JRandomTimesliceWriter-a ${DETECTOR}-o ${PIPE}-n ${NUMBER_OF_SLICES}-P ${PMT_FILE}-d ${DEBUG}-S ${SEED}-B"$BACKGROUND_HZ"-N"$RECYCLING"--!&&for((i=0;$i!=10;++i));do;echo 'EOF' > $PIPE;usleep 100000;done &&rm-f $PIPE)&JTimesliceReprocessor-a $
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null if do_usage *then usage $script< detector identifier > fi case set_variable DETECTOR_ID
Definition: JTDC.sh:11
then fatal Detector file should be binary format fi eval JPrintDetector a $DETECTOR O IDENTIFIER typeset a INPUT_FILES for RANGE in $RUNS[*]
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable
Definition: JAcoustics.sh:20
then rm i $OUTPUT_FILE fi let RUN
set_variable NUMBER_OF_ITERATIONS set_variable EPSILON cat acoustics_fit_parameters txt<< EOF $CONFIGURATION[*]Nmin=3;sigma_s=100.0e-6;stdev=10.0;mestimator=0;fixStrings=0;EOF for STRING in $STRINGS[*];do#fit stretching and(z) position of given string set_variable DETECTOR_TMP ${TMPDIR:-/tmp}/detector_A.datx JEditDetector-a $DETECTOR-o $DETECTOR_TMP-r $STRING JEditDetector-a $DETECTOR-o $DETECTOR-k $STRING for MUL in 0.005 0.001;do DX_M=0.2 for((N=0;$N< $NUMBER_OF_ITERATIONS;++N));do CHI2[3]=$CHI2[1] fitPositionOfString $STRING Z $DX_M fitStretchingOfString $STRING $MUL if(($CHI2[3]-$CHI2[1]< $EPSILON));then break fi done if(($N >=$NUMBER_OF_ITERATIONS));then printf"warning: reached maximum number of iterations %d - converenge %7.3f\n"$N $(($CHI2[3]-$CHI2[1])) fi done JMergeDetector-a $DETECTOR-a $DETECTOR_TMP-o $DETECTOR rm-f $DETECTOR_TMP JConvertDetectorFormat-a $DETECTOR-o $DETECTOR-r-d 0 > &dev null done
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DEBUG set_variable WORKDIR
Definition: JLegolas.sh:20
* usage
then JConvertDetectorFormat a $DETECTOR[1] o
then JFileTuna f $INPUT_FILE
Definition: file-Tuna.sh:66
set_variable INPUT_FILE
do sput $STRING $FLOOR sget MODULE INPUT_FILES
Definition: JCanberra.sh:73
&set_variable OUTPUT_FILE
then JMuonMCEvt f $INPUT_FILE o $INTERMEDIATE_FILE d
Definition: JMuonPath.sh:47
then JCalibrateToT a
Definition: JTuneHV.sh:116
then set_variable MODULE getModule a $DETECTOR L $STRING $FLOOR JEditDetector a $DETECTOR M $MODULE add $X o $DETECTOR else echo No update of detector $DETECTOR
then usage $script< input_file >< detector_file > fi set_variable OUTPUT_DIR set_variable SELECTOR JDAQTimesliceL1 set_variable DEBUG case set_variable DEBUG
then display $WORKDIR
Definition: plot-Domino.sh:128
$WORKDIR ev_configure_domsimulator txt echo process $DOM_SIMULATOR $i $SOURCE_HOST[$index] csh c(setenv ROOTSYS $ROOTSYS &&source $JPP_DIR/setenv.csh $JPP_DIR &&($DOM_SIMULATOR\-u\$NAME\$\-H\$SERVER\$\-M\$LOGGER\$\-d $DEBUG</dev/null > &/dev/null &))'
set_variable DETECTOR
do set_variable INPUT_FILE $WORKDIR KM3NeT_
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY source JAcoustics sh $DETECTOR_ID CHECK_EXIT_CODE typeset A TRIPODS get_tripods $WORKDIR tripod txt TRIPODS for EMITTER in
Definition: JCanberra.sh:42
source $JPP_DIR setenv csh $JPP_DIR &dev null eval JShellParser o a A
do echo Generating $dir eval D
Definition: JDrawLED.sh:53
version
Definition: JCalibratePMT.sh:7
do if[[!-f $ACOUSTICS_WORKDIR/${KEY}.txt]]
Definition: JAcoustics.sh:39