Jpp  17.0.0-rc.1
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JSirene.cc
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1 #include <string>
2 #include <iostream>
3 #include <iomanip>
4 #include <vector>
5 #include <limits>
6 
7 #include "TROOT.h"
8 #include "TFile.h"
9 #include "TH1D.h"
10 #include "TH2D.h"
11 #include "TProfile.h"
12 #include "TProfile2D.h"
13 #include "TRandom3.h"
14 
15 #include "km3net-dataformat/offline/Head.hh"
16 #include "km3net-dataformat/offline/Evt.hh"
17 #include "km3net-dataformat/definitions/applications.hh"
18 #include "km3net-dataformat/definitions/trkmembers.hh"
19 
20 #include "JLang/JSharedPointer.hh"
21 #include "JLang/Jpp.hh"
22 #include "JLang/JPredicate.hh"
23 #include "JSystem/JDate.hh"
24 
25 #include "JPhysics/JCDFTable.hh"
26 #include "JPhysics/JPDFTypes.hh"
27 #include "JPhysics/JPDFToolkit.hh"
28 #include "JPhysics/JGeane.hh"
29 #include "JPhysics/JGeanz.hh"
30 #include "JPhysics/JRadiation.hh"
31 #include "JPhysics/JRadiationFunction.hh"
32 #include "JPhysics/JRadiationSource.hh"
33 #include "JPhysics/JACoeffSource.hh"
34 #include "JPhysics/JPhysicsSupportkit.hh"
35 #include "JTools/JFunction1D_t.hh"
36 #include "JTools/JFunctionalMap_t.hh"
37 
38 #include "JAAnet/JAAnetToolkit.hh"
39 #include "JAAnet/JPDB.hh"
40 
41 #include "JSirene/JSirene.hh"
42 #include "JSirene/pythia.hh"
43 #include "JSirene/JSeaWater.hh"
44 #include "JSirene/JCDFTable1D.hh"
45 #include "JSirene/JCDFTable2D.hh"
46 #include "JSirene/JSireneToolkit.hh"
47 
48 #include "JDetector/JDetector.hh"
49 #include "JDetector/JDetectorSubset.hh"
50 #include "JDetector/JDetectorToolkit.hh"
51 #include "JGeometry3D/JCylinder3D.hh"
52 
53 #include "JSupport/JMultipleFileScanner.hh"
54 #include "JSupport/JFileRecorder.hh"
55 #include "JSupport/JMonteCarloFileSupportkit.hh"
56 #include "JSupport/JSupport.hh"
57 #include "JSupport/JMeta.hh"
58 
59 #include "Jeep/JProperties.hh"
60 #include "Jeep/JPrint.hh"
61 #include "Jeep/JTimer.hh"
62 #include "Jeep/JParser.hh"
63 #include "Jeep/JMessage.hh"
64 
65 
66 int debug; //!< debug level
67 int numberOfBins = 200; //!< number of bins for average CDF integral of optical module
68 double safetyFactor = 1.7; //!< safety factor for average CDF integral of optical module
69 
70 
71 namespace {
72 
73  using namespace JPP;
74 
75  typedef JHermiteSplineFunction1D_t JFunction1D_t;
76  typedef JMAPLIST<JPolint1FunctionalMap,
77  JPolint1FunctionalGridMap,
78  JPolint1FunctionalGridMap>::maplist J3DMap_t;
79  typedef JMAPLIST<JPolint1FunctionalMap,
80  JPolint1FunctionalMap,
81  JPolint1FunctionalGridMap,
82  JPolint1FunctionalGridMap>::maplist J4DMap_t;
83 
84  typedef JCDFTable<JFunction1D_t, J3DMap_t> JCDF4D_t; // muon
85  typedef JCDFTable<JFunction1D_t, J4DMap_t> JCDF5D_t; // shower
86 
87  typedef JCDFTable1D<JFunction1D_t::argument_type, JFunction1D_t::result_type> JCDF1D_t; // muon
88  typedef JCDFTable2D<JFunction1D_t::argument_type, JFunction1D_t::result_type> JCDF2D_t; // shower
89 
90 
91 
92  /**
93  * Auxiliary class for CDF tables.
94  */
95  template<class function_type, // CDF function
96  class integral_type> // CDF integral
97  struct JCDFHelper {
98  /**
99  * Constructor.
100  *
101  * \param file_descriptor file name descriptor
102  * \param type PDF type
103  */
104  JCDFHelper(const std::string& file_descriptor, const JPDFType_t type)
105  {
106  using namespace std;
107 
108  this->type = type;
109 
110  const string file_name = getFilename(file_descriptor, this->type);
111 
112  STATUS("loading input from file " << file_name << "... " << flush);
113 
114  try {
115  function.load(file_name.c_str());
116  }
117  catch(const JException& error) {
118  FATAL(error.what() << endl);
119  }
120 
121  new (&integral) integral_type(function, numberOfBins, safetyFactor);
122 
123  STATUS("OK" << endl);
124  }
125 
126  JPDFType_t type;
127  function_type function;
128  integral_type integral;
129  };
130 
131 
132  typedef JCDFHelper<JCDF4D_t, JCDF1D_t> JCDF_t; //!< muon light
133  typedef JCDFHelper<JCDF5D_t, JCDF2D_t> JCDG_t; //!< shower light
134 
135 
136  /**
137  * Get random direction.
138  *
139  * \param t2 square of theta RMS [rad^2]
140  * \return direction
141  */
142  inline JVersor3Z getRandomDirection(const double t2)
143  {
144  const double tv = sqrt(gRandom->Exp(1.0) * t2);
145  const double phi = gRandom->Uniform(-PI, +PI);
146 
147  return JVersor3Z(tv*cos(phi), tv*sin(phi));
148  }
149 }
150 
151 
152 /**
153  * \file
154  *
155  * Main program to simulate detector response to muons and showers.
156  *
157  * \image html sirene.png "Picture by Claudine Colnard"
158  *
159  * Note that CDF file descriptor should contain the wild card character JPHYSICS::WILD_CARD;\n
160  * The file names are obtained by replacing JPHYSICS::WILD_CARD; with
161  * - JPHYSICS::DIRECT_LIGHT_FROM_MUON;
162  * - JPHYSICS::SCATTERED_LIGHT_FROM_MUON;
163  * - JPHYSICS::DIRECT_LIGHT_FROM_DELTARAYS;
164  * - JPHYSICS::SCATTERED_LIGHT_FROM_DELTARAYS;
165  * - JPHYSICS::DIRECT_LIGHT_FROM_EMSHOWER; and
166  * - JPHYSICS::SCATTERED_LIGHT_FROM_EMSHOWER,
167  * respectively.
168  *
169  * The CDF tables can be produced with the script <tt>JMakePDF.sh</tt>:
170  * <pre>
171  * JMakePDF.sh -P
172  * </pre>
173  * (option <tt>-h</tt> will print all available options).
174  * Note that the script will launch a large number of processes (<tt>JMakePDF</tt> and <tt>JMakePDG</tt>)\n
175  * which may take a considerable amount of time to completion.\n
176  * On a standard desktop, all jobs should be finished within 1/2 a day or so.
177  *
178  * The same script should then be run with option <tt>-M</tt> to merge the PDF files, i.e:
179  * <pre>
180  * JMakePDF.sh -M
181  * </pre>
182  *
183  * CDF tables are obtained by running the same script with option <tt>-C</tt>, i.e:
184  * <pre>
185  * JMakePDF.sh -C
186  * </pre>
187  *
188  * The various PDFs can be drawn using the <tt>JDrawPDF</tt> or <tt>JDrawPDG</tt> applications.\n
189  * The tabulated PDFs can be plotted using the <tt>JPlotPDF</tt> or <tt>JPlotPDG</tt> applications.\n
190  * The tabulated CDFs can be plotted using the <tt>JPlotCDF</tt> or <tt>JPlotCDG</tt> applications.
191  * \author mdejong
192  */
193 int main(int argc, char **argv)
194 {
195  using namespace std;
196  using namespace JPP;
197 
198  string fileDescriptor;
199  JMultipleFileScanner<JAAnetTypes_t> inputFile;
200  JFileRecorder <JTYPELIST<JAAnetTypes_t, JMeta, JRootTypes_t>::typelist> outputFile;
201  JLimit_t& numberOfEvents = inputFile.getLimit();
202  string detectorFile;
203  JParameters parameters;
204  bool writeEMShowers;
205  bool keep;
206  size_t numberOfHits;
207  double factor;
208  UInt_t seed;
209 
210  try {
211 
212  JProperties properties;
213 
214  properties.insert(gmake_property(parameters.Ecut_GeV));
215  properties.insert(gmake_property(parameters.Emin_GeV));
216  properties.insert(gmake_property(parameters.Dmin_m));
217  properties.insert(gmake_property(parameters.Emax_GeV));
218  properties.insert(gmake_property(parameters.Dmax_m));
219  properties.insert(gmake_property(parameters.Tmax_ns));
220  properties.insert(gmake_property(parameters.Nmax_npe));
221 
222  properties.insert(gmake_property(numberOfBins));
223  properties.insert(gmake_property(safetyFactor));
224 
225  JParser<> zap("Main program to simulate detector response to muons and showers.");
226 
227  zap['@'] = make_field(properties) = JPARSER::initialised();
228  zap['F'] = make_field(fileDescriptor, "file name descriptor for CDF tables");
229  zap['f'] = make_field(inputFile) = JPARSER::initialised();
230  zap['o'] = make_field(outputFile) = "sirene.root";
231  zap['n'] = make_field(numberOfEvents) = JLimit::max();
232  zap['a'] = make_field(detectorFile) = "";
233  zap['s'] = make_field(writeEMShowers, "store generated EM showers in event");
234  zap['k'] = make_field(keep, "keep position of tracks");
235  zap['N'] = make_field(numberOfHits, "minimum number of hits to output event") = 1;
236  zap['U'] = make_field(factor, "scaling factor applied to light yields") = 1.0;
237  zap['S'] = make_field(seed) = 0;
238  zap['d'] = make_field(debug) = 1;
239 
240  zap(argc, argv);
241  }
242  catch(const exception &error) {
243  FATAL(error.what() << endl);
244  }
245 
246 
247  gRandom->SetSeed(seed);
248 
249 
250  const JMeta meta(argc, argv);
251 
252  const double Zbed = 0.0; // level of seabed [m]
253 
254  vector<JCDF_t> CDF;
255  vector<JCDG_t> CDG;
256 
257  CDF.push_back(JCDF_t(fileDescriptor, DIRECT_LIGHT_FROM_MUON));
258  CDF.push_back(JCDF_t(fileDescriptor, SCATTERED_LIGHT_FROM_MUON));
259  CDF.push_back(JCDF_t(fileDescriptor, DIRECT_LIGHT_FROM_DELTARAYS));
260  CDF.push_back(JCDF_t(fileDescriptor, SCATTERED_LIGHT_FROM_DELTARAYS));
261 
262  CDG.push_back(JCDG_t(fileDescriptor, DIRECT_LIGHT_FROM_EMSHOWER));
263  CDG.push_back(JCDG_t(fileDescriptor, SCATTERED_LIGHT_FROM_EMSHOWER));
264 
265 
266  double maximal_road_width = 0.0; // road width [m]
267  double maximal_distance = 0.0; // road width [m]
268 
269  for (size_t i = 0; i != CDF.size(); ++i) {
270 
271  DEBUG("Range CDF["<< CDF[i].type << "] " << CDF[i].function.intensity.getXmax() << " m" << endl);
272 
273  maximal_road_width = max(maximal_road_width, CDF[i].function.intensity.getXmax());
274  }
275 
276  for (size_t i = 0; i != CDG.size(); ++i) {
277 
278  DEBUG("Range CDG["<< CDG[i].type << "] " << CDG[i].function.intensity.getXmax() << " m" << endl);
279 
280  if (!is_scattered(CDF[i].type)) {
281  maximal_road_width = max(maximal_road_width, CDG[i].function.intensity.getXmax());
282  }
283 
284  maximal_distance = max(maximal_distance, CDG[i].function.intensity.getXmax());
285  }
286 
287  NOTICE("Maximal road width [m] " << maximal_road_width << endl);
288  NOTICE("Maximal distance [m] " << maximal_distance << endl);
289 
290 
291  if (detectorFile == "" || inputFile.empty()) {
292  STATUS("Nothing to be done." << endl);
293  return 0;
294  }
295 
296  JDetector detector;
297 
298  try {
299 
300  STATUS("Load detector... " << flush);
301 
302  load(detectorFile, detector);
303 
304  STATUS("OK" << endl);
305  }
306  catch(const JException& error) {
307  FATAL(error);
308  }
309 
310  // remove empty modules
311 
312  for (JDetector::iterator module = detector.begin(); module != detector.end(); ) {
313  if (!module->empty())
314  ++module;
315  else
316  module = detector.erase(module);
317  }
318 
319  vector< JSharedPointer<JRadiationInterface> > radiation;
320  vector< JSharedPointer<JACoeffInterface> > ionization;
321 
322  if (true) {
323 
324  STATUS("Setting up radiation tables... " << flush);
325 
326  //More accuracy can be achieved uncommenting the commented elements and its initializations, remember to do the same in JSeawater.hh (The code will run slower).
327 
328  const JRadiation hydrogen ( 1.0, 1.0, 40, 0.01, 0.1, 0.1);
329  const JRadiation oxygen ( 8.0, 16.0, 40, 0.01, 0.1, 0.1);
330  const JRadiation chlorine (17.0, 35.5, 40, 0.01, 0.1, 0.1);
331  const JRadiation sodium (11.0, 23.0, 40, 0.01, 0.1, 0.1);
332  /* const JRadiation calcium (20.0, 40.0, 40, 0.01, 0.1, 0.1);
333  const JRadiation magnesium(12.0, 24.3, 40, 0.01, 0.1, 0.1);
334  const JRadiation potassium(19.0, 39.0, 40, 0.01, 0.1, 0.1);
335  const JRadiation sulphur (16.0, 32.0, 40, 0.01, 0.1, 0.1);
336  */
337 
338  JSharedPointer<JRadiation> Hydrogen (new JRadiationFunction(hydrogen, 300, 0.2, 1.0e11));
339  JSharedPointer<JRadiation> Oxygen (new JRadiationFunction(oxygen, 300, 0.2, 1.0e11));
340  JSharedPointer<JRadiation> Chlorine (new JRadiationFunction(chlorine, 300, 0.2, 1.0e11));
341  JSharedPointer<JRadiation> Sodium (new JRadiationFunction(sodium, 300, 0.2, 1.0e11));
342  /* JSharedPointer<JRadiation> Calcium (new JRadiationFunction(calcium, 300, 0.2, 1.0e11));
343  JSharedPointer<JRadiation> Magnesium(new JRadiationFunction(magnesium,300, 0.2, 1.0e11));
344  JSharedPointer<JRadiation> Potassium(new JRadiationFunction(potassium,300, 0.2, 1.0e11));
345  JSharedPointer<JRadiation> Sulphur (new JRadiationFunction(sulphur, 300, 0.2, 1.0e11));
346  */
347 
348  radiation.push_back(new JRadiationSource(11, Oxygen, DENSITY_SEA_WATER * JSeaWater::O(), EErad_t));
349  radiation.push_back(new JRadiationSource(12, Chlorine, DENSITY_SEA_WATER * JSeaWater::Cl(), EErad_t));
350  radiation.push_back(new JRadiationSource(13, Hydrogen, DENSITY_SEA_WATER * JSeaWater::H(), EErad_t));
351  radiation.push_back(new JRadiationSource(14, Sodium, DENSITY_SEA_WATER * JSeaWater::Na(), EErad_t));
352  /* radiation.push_back(new JRadiationSource(15, Calcium, DENSITY_SEA_WATER * JSeaWater::Ca(), EErad_t));
353  radiation.push_back(new JRadiationSource(16, Magnesium,DENSITY_SEA_WATER * JSeaWater::Mg(), EErad_t));
354  radiation.push_back(new JRadiationSource(17, Potassium,DENSITY_SEA_WATER * JSeaWater::K(), EErad_t));
355  radiation.push_back(new JRadiationSource(18, Sulphur, DENSITY_SEA_WATER * JSeaWater::S(), EErad_t));
356  */
357 
358  radiation.push_back(new JRadiationSource(21, Oxygen, DENSITY_SEA_WATER * JSeaWater::O(), Brems_t));
359  radiation.push_back(new JRadiationSource(22, Chlorine, DENSITY_SEA_WATER * JSeaWater::Cl(), Brems_t));
360  radiation.push_back(new JRadiationSource(23, Hydrogen, DENSITY_SEA_WATER * JSeaWater::H(), Brems_t));
361  radiation.push_back(new JRadiationSource(24, Sodium, DENSITY_SEA_WATER * JSeaWater::Na(), Brems_t));
362  /* radiation.push_back(new JRadiationSource(25, Calcium, DENSITY_SEA_WATER * JSeaWater::Ca(), Brems_t));
363  radiation.push_back(new JRadiationSource(26, Magnesium,DENSITY_SEA_WATER * JSeaWater::Mg(), Brems_t));
364  radiation.push_back(new JRadiationSource(27, Potassium,DENSITY_SEA_WATER * JSeaWater::K(), Brems_t));
365  radiation.push_back(new JRadiationSource(28, Sulphur, DENSITY_SEA_WATER * JSeaWater::S(), Brems_t));
366  */
367 
368  radiation.push_back(new JRadiationSource(31, Oxygen, DENSITY_SEA_WATER * JSeaWater::O(), GNrad_t));
369  radiation.push_back(new JRadiationSource(32, Chlorine, DENSITY_SEA_WATER * JSeaWater::Cl(), GNrad_t));
370  radiation.push_back(new JRadiationSource(33, Hydrogen, DENSITY_SEA_WATER * JSeaWater::H(), GNrad_t));
371  radiation.push_back(new JRadiationSource(34, Sodium, DENSITY_SEA_WATER * JSeaWater::Na(), GNrad_t));
372  /* radiation.push_back(new JRadiationSource(35, Calcium, DENSITY_SEA_WATER * JSeaWater::Ca(), GNrad_t));
373  radiation.push_back(new JRadiationSource(36, Magnesium,DENSITY_SEA_WATER * JSeaWater::Mg(), GNrad_t));
374  radiation.push_back(new JRadiationSource(37, Potassium,DENSITY_SEA_WATER * JSeaWater::K(), GNrad_t));
375  radiation.push_back(new JRadiationSource(38, Sulphur, DENSITY_SEA_WATER * JSeaWater::S(), GNrad_t));
376  */
377  radiation.push_back(new JDISSource(100, DENSITY_SEA_WATER));
378 
379  ionization.push_back(new JACoeffSource(Oxygen, DENSITY_SEA_WATER * JSeaWater::O()));
380  ionization.push_back(new JACoeffSource(Chlorine, DENSITY_SEA_WATER * JSeaWater::Cl()));
381  ionization.push_back(new JACoeffSource(Hydrogen, DENSITY_SEA_WATER * JSeaWater::H()));
382  ionization.push_back(new JACoeffSource(Sodium, DENSITY_SEA_WATER * JSeaWater::Na()));
383  /* ionization.push_back(new JACoeffSource(Calcium, DENSITY_SEA_WATER * JSeaWater::Ca()));
384  ionization.push_back(new JACoeffSource(Magnesium,DENSITY_SEA_WATER * JSeaWater::Mg()));
385  ionization.push_back(new JACoeffSource(Potassium,DENSITY_SEA_WATER * JSeaWater::K()));
386  ionization.push_back(new JACoeffSource(Sulphur, DENSITY_SEA_WATER * JSeaWater::S()));
387  */
388 
389  STATUS("OK" << endl);
390  }
391 
392 
393  Vec center(0,0,0);
394  Head header;
395 
396  try {
397 
398  header = inputFile.getHeader();
399 
400  JHead buffer(header);
401 
402  center = get<Vec>(buffer);
403 
404  buffer.simul.push_back(JAANET::simul());
405 
406  buffer.simul.rbegin()->program = APPLICATION_JSIRENE;
407  buffer.simul.rbegin()->version = getGITVersion();
408  buffer.simul.rbegin()->date = getDate();
409  buffer.simul.rbegin()->time = getTime();
410 
411  buffer.detector.push_back(JAANET::detector());
412 
413  buffer.detector.rbegin()->program = APPLICATION_JSIRENE;
414  buffer.detector.rbegin()->filename = detectorFile;
415 
416  buffer.push(&JHead::simul);
417  buffer.push(&JHead::detector);
418 
419  if (!keep) {
420 
421  buffer.coord_origin = coord_origin(0.0, 0.0, 0.0);
422  buffer.can.zmin += center.z;
423  buffer.can.zmax += center.z;
424 
425  buffer.push(&JHead::coord_origin);
426  buffer.push(&JHead::can);
427  }
428 
429  const JCircle2D circle(detector.begin(), detector.end());
430 
431  center += Vec(circle.getX(), circle.getY(), 0.0);
432 
433  copy(buffer, header);
434  }
435  catch(const JException& error) {
436  FATAL(error);
437  }
438 
439  if (!keep)
440  NOTICE("Offset applied to true tracks is: " << center << endl);
441  else
442  NOTICE("No offset applied to true tracks." << endl);
443 
444  JCylinder3D cylinder(detector.begin(), detector.end());
445 
446  cylinder.addMargin(maximal_distance);
447 
448  if (cylinder.getZmin() < Zbed) {
449  cylinder.setZmin(Zbed);
450  }
451 
452  NOTICE("Light generation volume: " << cylinder << endl);
453 
454  TH1D job("job", NULL, 400, 0.5, 400.5);
455  TProfile cpu("cpu", NULL, 16, 0.0, 8.0);
456  TProfile2D rms("rms", NULL, 16, 0.0, 8.0, 201, -0.5, 200.5);
457  TProfile2D rad("rad", NULL, 16, 0.0, 8.0, 201, -0.5, 200.5);
458 
459 
460  outputFile.open();
461 
462  if (!outputFile.is_open()) {
463  FATAL("Error opening file " << outputFile << endl);
464  }
465 
466  outputFile.put(meta);
467  outputFile.put(header);
468  outputFile.put(*gRandom);
469 
470  const double epsilon = 1.0e-6; //
471  const JRange<double> python(epsilon, PI - epsilon); // constrain PMT angles
472 
473  JTimer timer;
474 
475  for (JMultipleFileScanner<Evt>& in = inputFile; in.hasNext(); ) {
476 
477  STATUS("event: " << setw(10) << in.getCounter() << '\r'); DEBUG(endl);
478 
479  job.Fill(1.0);
480 
481  Evt* evt = in.next();
482 
483  if (!keep) {
484  for (vector<Trk>::iterator track = evt->mc_trks.begin(); track != evt->mc_trks.end(); ++track) {
485  track->pos += center;
486  }
487  }
488 
489  Evt event(*evt); // output
490 
491  event.mc_hits.clear();
492 
493  JHits_t mc_hits; // temporary buffer
494 
495  timer.reset();
496  timer.start();
497 
498  for (vector<Trk>::const_iterator track = evt->mc_trks.begin(); track != evt->mc_trks.end(); ++track) {
499 
500  if (!track->is_finalstate()) {
501  continue; // only final state particles produce light
502  }
503 
504  if (is_muon(*track)) {
505 
506  // -----------------------------------------------
507  // muon
508  // -----------------------------------------------
509 
510  job.Fill(2.0);
511 
512  typedef JDetectorSubset<JModuleComparator3Z_t> JDetectorSubset_t;
513 
514  const JCylinder3D::intersection_type intersection = cylinder.getIntersection(getAxis(*track));
515 
516  double Zmin = intersection.first;
517  double Zmax = intersection.second;
518 
519  if (Zmax - Zmin <= parameters.Dmin_m) {
520  continue;
521  }
522 
523  JVertex vertex(0.0, track->t, track->E); // start of muon
524 
525  if (track->pos.z < Zbed) { // propagate muon through rock
526 
527  if (track->dir.z > 0.0)
528  vertex.step(gRock, (Zbed - track->pos.z) / track->dir.z);
529  else
530  continue;
531  }
532 
533  if (vertex.getZ() < Zmin) { // propagate muon through water
534  vertex.step(gWater, Zmin - vertex.getZ());
535  }
536 
537  if (vertex.getRange() <= parameters.Dmin_m) {
538  continue;
539  }
540 
541  job.Fill(3.0);
542 
543  const JDetectorSubset_t subdetector(detector, getAxis(*track), maximal_road_width);
544 
545  if (subdetector.empty()) {
546  continue;
547  }
548 
549  job.Fill(4.0);
550 
551  JTrack muon(vertex); // propagate muon trough detector
552 
553  while (vertex.getE() >= parameters.Emin_GeV && vertex.getZ() < Zmax) {
554 
555  const int N = radiation.size();
556 
557  double li[N]; // inverse interaction lengths
558  double ls = 1.0e-5; // minimal total inverse interaction length [m^-1]
559 
560  for (int i = 0; i != N; ++i) {
561  ls += li[i] = radiation[i]->getInverseInteractionLength(vertex.getE());
562  }
563 
564  double As = 0.0; // ionization energy loss
565 
566  for (size_t i = 0; i != ionization.size(); ++i) {
567  As += ionization[i]->getA(vertex.getE());
568  }
569 
570  double step = gRandom->Exp(1.0) / ls; // distance to next radiation process
571  double range = vertex.getRange(As); // range of muon
572 
573  if (vertex.getE() < parameters.Emax_GeV) { // limited step size
574  if (parameters.Dmax_m < range) {
575  range = parameters.Dmax_m;
576  }
577  }
578 
579  double ts = getThetaMCS(vertex.getE(), min(step,range)); // multiple Coulomb scattering angle [rad]
580  double T2 = ts*ts; //
581 
582  rms.Fill(log10(vertex.getE()), (Double_t) 0, ts*ts);
583 
584  vertex.getDirection() += getRandomDirection(T2/3.0); // multiple Coulomb planar scattering
585 
586  vertex.step(As, min(step,range)); // ionization energy loss
587 
588  double Es = 0.0; // shower energy [GeV]
589 
590  if (step < range) {
591 
592  if (vertex.getE() >= parameters.Emin_GeV) {
593 
594  double y = gRandom->Uniform(ls);
595 
596  for (int i = 0; i != N; ++i) {
597 
598  y -= li[i];
599 
600  if (y < 0.0) {
601 
602  Es = radiation[i]->getEnergyOfShower(vertex.getE()); // shower energy [GeV]
603  ts = radiation[i]->getThetaRMS(vertex.getE(), Es); // scattering angle [rad]
604 
605  T2 += ts*ts;
606 
607  rms.Fill(log10(vertex.getE()), (Double_t) radiation[i]->getID(), ts*ts);
608  rad.Fill(log10(vertex.getE()), (Double_t) radiation[i]->getID(), Es);
609 
610  break;
611  }
612  }
613  }
614  }
615 
616  vertex.applyEloss(getRandomDirection(T2), Es);
617 
618  muon.push_back(vertex);
619  }
620 
621  // add muon end point
622 
623  if (vertex.getZ() < Zmax && vertex.getRange() > 0.0) {
624 
625  vertex.step(vertex.getRange());
626 
627  muon.push_back(vertex);
628  }
629 
630  // add information to output muon
631 
632  vector<Trk>::iterator trk = find_if(event.mc_trks.begin(),
633  event.mc_trks.end(),
634  make_predicate(&Trk::id, track->id));
635 
636  if (trk != event.mc_trks.end()) {
637  trk->len = (muon.rbegin()->getZ() < Zmax ? +1 : -1) * (muon.rbegin()->getZ() - muon.begin()->getZ());
638  trk->setusr(mc_usr_keys::energy_lost_in_can, muon.begin()->getE() - muon.rbegin()->getE());
639  }
640 
641  for (JDetector::const_iterator module = subdetector.begin(); module != subdetector.end(); ++module) {
642 
643  const double z0 = muon.begin()->getZ();
644  const double t0 = muon.begin()->getT();
645  const double Z = module->getZ() - module->getX() / getTanThetaC();
646 
647  if (Z >= muon.begin()->getZ() && Z <= muon.rbegin()->getZ()) {
648 
649  const JVector2D pos = muon.getPosition(Z);
650  const double R = hypot(module->getX() - pos.getX(),
651  module->getY() - pos.getY());
652 
653  for (size_t i = 0; i != CDF.size(); ++i) {
654 
655  if (R < CDF[i].integral.getXmax()) {
656 
657  try {
658 
659  double W = 1.0; // mip
660 
661  if (is_deltarays(CDF[i].type)) {
662  W = getDeltaRaysFromMuon(muon.getE(Z)); // delta-rays
663  }
664 
665  const double NPE = CDF[i].integral.getNPE(R) * module->size() * factor * W;
666  const int N = gRandom->Poisson(NPE);
667 
668  if (N != 0) {
669 
670  double ns = 0.0;
671 
672  for (JModule::const_iterator pmt = module->begin(); pmt != module->end(); ++pmt) {
673 
674  const double R = hypot(pmt->getX() - pos.getX(),
675  pmt->getY() - pos.getY());
676  const double Z = pmt->getZ() - z0;
677  const double theta = python.constrain(pmt->getTheta());
678  const double phi = python.constrain(fabs(pmt->getPhi()));
679 
680  const double npe = CDF[i].function.getNPE(R, theta, phi) * factor * W;
681 
682  ns += npe;
683 
684  int n0 = min(getNumberOfPhotoElectrons(NPE, N, npe), parameters.Nmax_npe);
685 
686  job.Fill((double) (100 + CDF[i].type), (double) n0);
687 
688  while (n0 != 0) {
689 
690  const double t1 = CDF[i].function.getTime(R, theta, phi, gRandom->Rndm());
691  const int n1 = getNumberOfPhotoElectrons(n0);
692 
693  mc_hits.push_back(JHit_t(mc_hits.size() + 1,
694  pmt->getID(),
695  getHitType(CDF[i].type),
696  track->id,
697  t0 + (R * getTanThetaC() + Z) / C + t1,
698  n1));
699 
700  n0 -= n1;
701  }
702  }
703 
704  if (ns > NPE) {
705  job.Fill((double) (300 + CDF[i].type));
706  }
707  }
708  }
709  catch(const exception& error) {
710  job.Fill((double) (200 + CDF[i].type));
711  }
712  }
713  }
714  }
715  }
716 
717  for (JTrack::const_iterator vertex = muon.begin(); vertex != muon.end(); ++vertex) {
718 
719  const double Es = vertex->getEs();
720 
721  if (Es >= parameters.Ecut_GeV) {
722 
723  const double z0 = vertex->getZ();
724  const double t0 = vertex->getT();
725  const double DZ = geanz.getMaximum(Es);
726 
727  int origin = track->id;
728 
729  if (writeEMShowers) {
730  origin = event.mc_trks.size() + 1;
731  }
732 
733  int number_of_hits = 0;
734 
735  JDetectorSubset_t::range_type range = subdetector.getRange(z0 - maximal_distance,
736  z0 + maximal_distance);
737 
738  for (JDetector::const_iterator module = range.begin(); module != range.end(); ++module) {
739 
740  const double R = hypot(module->getX() - vertex->getX(),
741  module->getY() - vertex->getY());
742  const double Z = module->getZ() - z0 - DZ;
743  const double D = sqrt(R*R + Z*Z);
744  const double cd = Z / D;
745 
746  for (size_t i = 0; i != CDG.size(); ++i) {
747 
748  if (D < CDG[i].integral.getXmax()) {
749 
750  try {
751 
752  const double NPE = CDG[i].integral.getNPE(D, cd) * Es * module->size() * factor;
753  const int N = gRandom->Poisson(NPE);
754 
755  if (N != 0) {
756 
757  double ns = 0.0;
758 
759  for (JModule::const_iterator pmt = module->begin(); pmt != module->end(); ++pmt) {
760 
761  const double R = hypot(pmt->getX() - vertex->getX(),
762  pmt->getY() - vertex->getY());
763  const double Z = pmt->getZ() - z0 - DZ;
764  const double D = sqrt(R*R + Z*Z);
765  const double cd = Z / D;
766  const double theta = python.constrain(pmt->getTheta());
767  const double phi = python.constrain(fabs(pmt->getPhi()));
768 
769  const double npe = CDG[i].function.getNPE(D, cd, theta, phi) * Es * factor;
770 
771  ns += npe;
772 
773  int n0 = min(getNumberOfPhotoElectrons(NPE, N, npe), parameters.Nmax_npe);
774 
775  job.Fill((double) (100 + CDG[i].type), (double) n0);
776 
777  while (n0 != 0) {
778 
779  const double dz = geanz.getLength(Es, gRandom->Rndm());
780  const double Z = pmt->getZ() - z0 - dz;
781  const double D = sqrt(R*R + Z*Z);
782  const double cd = Z / D;
783 
784  const double t1 = CDG[i].function.getTime(D, cd, theta, phi, gRandom->Rndm());
785  const int n1 = getNumberOfPhotoElectrons(n0);
786 
787  mc_hits.push_back(JHit_t(mc_hits.size() + 1,
788  pmt->getID(),
789  getHitType(CDG[i].type),
790  origin,
791  t0 + (dz + D * getIndexOfRefraction()) / C + t1,
792  n1));
793 
794  n0 -= n1;
795 
796  number_of_hits += n1;
797  }
798  }
799 
800  if (ns > NPE) {
801  job.Fill((double) (300 + CDG[i].type));
802  }
803  }
804  }
805  catch(const exception& error) {
806  job.Fill((double) (200 + CDG[i].type));
807  }
808  }
809  }
810  }
811 
812  if (writeEMShowers && number_of_hits != 0) {
813 
814  event.mc_trks.push_back(JTrk_t(origin,
815  TRACK_TYPE_PHOTON,
816  track->id,
817  track->pos + track->dir * vertex->getZ(),
818  track->dir,
819  vertex->getT(),
820  Es));
821  }
822  }
823  }
824 
825  } else if (track->len > 0.0) {
826 
827  // -----------------------------------------------
828  // decayed particles treated as mip (tau includes mip+deltaray)
829  // -----------------------------------------------
830 
831  job.Fill(6.0);
832 
833  const double z0 = 0.0;
834  const double z1 = z0 + track->len;
835  const double t0 = track->t;
836  const double E = track->E;
837 
838  const JTransformation3D transformation = getTransformation(*track);
839 
840  JModule buffer;
841 
842  for (JDetector::const_iterator module = detector.begin(); module != detector.end(); ++module) {
843 
844  const JPosition3D pos = transformation.transform(module->getPosition());
845 
846  const double R = pos.getX();
847  const double Z = pos.getZ() - R / getTanThetaC();
848 
849  if (Z < z0 ||
850  Z > z1 ||
851  R > maximal_road_width) {
852  continue;
853  }
854 
855  for (size_t i = 0; i != CDF.size(); ++i) {
856 
857  double W = 1.0; // mip
858 
859  if (is_deltarays(CDF[i].type)) {
860 
861  if (is_tau(*track))
862  W = getDeltaRaysFromTau(E); // delta-rays
863  else
864  continue;
865  }
866 
867  if (R < CDF[i].integral.getXmax()) {
868 
869  try {
870 
871  const double NPE = CDF[i].integral.getNPE(R) * module->size() * factor * W;
872  const int N = gRandom->Poisson(NPE);
873 
874  if (N != 0) {
875 
876  buffer = *module;
877 
878  buffer.transform(transformation);
879 
880  double ns = 0.0;
881 
882  for (JModule::const_iterator pmt = buffer.begin(); pmt != buffer.end(); ++pmt) {
883 
884  const double R = pmt->getX();
885  const double Z = pmt->getZ() - z0;
886  const double theta = python.constrain(pmt->getTheta());
887  const double phi = python.constrain(fabs(pmt->getPhi()));
888 
889  const double npe = CDF[i].function.getNPE(R, theta, phi) * factor * W;
890 
891  ns += npe;
892 
893  int n0 = min(getNumberOfPhotoElectrons(NPE, N, npe), parameters.Nmax_npe);
894 
895  job.Fill((double) (120 + CDF[i].type), (double) n0);
896 
897  while (n0 != 0) {
898 
899  const double t1 = CDF[i].function.getTime(R, theta, phi, gRandom->Rndm());
900  const int n1 = getNumberOfPhotoElectrons(n0);
901 
902  mc_hits.push_back(JHit_t(mc_hits.size() + 1,
903  pmt->getID(),
904  getHitType(CDF[i].type),
905  track->id,
906  t0 + (R * getTanThetaC() + Z) / C + t1,
907  n1));
908 
909  n0 -= n1;
910  }
911  }
912 
913  if (ns > NPE) {
914  job.Fill((double) (320 + CDF[i].type));
915  }
916  }
917  }
918  catch(const exception& error) {
919  job.Fill((double) (220 + CDF[i].type));
920  }
921 
922  }
923  }
924  }
925 
926  if (!buffer.empty()) {
927  job.Fill(7.0);
928  }
929 
930  } else if (!is_neutrino(*track)) {
931 
932  if (JPDB::getInstance().hasPDG(track->type)) {
933 
934  // -----------------------------------------------
935  // electron or hadron
936  // -----------------------------------------------
937 
938  job.Fill(8.0);
939 
940  double E = track->E;
941 
942  try {
943  E = getKineticEnergy(E, JPDB::getInstance().getPDG(track->type).mass);
944  }
945  catch(const exception& error) {
946  ERROR(error.what() << endl);
947  }
948 
949  E = pythia(track->type, E);
950 
951  if (E >= parameters.Ecut_GeV && cylinder.getDistance(getPosition(*track)) < parameters.Dmin_m) {
952 
953  const double z0 = 0.0;
954  const double t0 = track->t;
955  const double DZ = geanz.getMaximum(E);
956 
957  const JTransformation3D transformation = getTransformation(*track);
958 
959  JModule buffer;
960 
961  for (JDetector::const_iterator module = detector.begin(); module != detector.end(); ++module) {
962 
963  const JPosition3D pos = transformation.transform(module->getPosition());
964 
965  const double R = pos.getX();
966  const double Z = pos.getZ() - z0 - DZ;
967  const double D = sqrt(R*R + Z*Z);
968  const double cd = Z / D;
969 
970  for (size_t i = 0; i != CDG.size(); ++i) {
971 
972  if (D < CDG[i].integral.getXmax()) {
973 
974  try {
975 
976  const double NPE = CDG[i].integral.getNPE(D, cd) * E * module->size() * factor;
977  const int N = gRandom->Poisson(NPE);
978 
979  if (N != 0) {
980 
981  buffer = *module;
982 
983  buffer.transform(transformation);
984 
985  double ns = 0.0;
986 
987  for (JModule::const_iterator pmt = buffer.begin(); pmt != buffer.end(); ++pmt) {
988 
989  const double R = pmt->getX();
990  const double Z = pmt->getZ() - z0 - DZ;
991  const double D = sqrt(R*R + Z*Z);
992  const double cd = Z / D;
993  const double theta = python.constrain(pmt->getTheta());
994  const double phi = python.constrain(fabs(pmt->getPhi()));
995 
996  const double npe = CDG[i].function.getNPE(D, cd, theta, phi) * E * factor;
997 
998  ns += npe;
999 
1000  int n0 = min(getNumberOfPhotoElectrons(NPE, N, npe), parameters.Nmax_npe);
1001 
1002  job.Fill((double) (140 + CDG[i].type), (double) n0);
1003 
1004  while (n0 != 0) {
1005 
1006  const double dz = geanz.getLength(E, gRandom->Rndm());
1007  const double Z = pmt->getZ() - z0 - dz;
1008  const double D = sqrt(R*R + Z*Z);
1009  const double cd = Z / D;
1010 
1011  const double t1 = CDG[i].function.getTime(D, cd, theta, phi, gRandom->Rndm());
1012  const int n1 = getNumberOfPhotoElectrons(n0);
1013 
1014  mc_hits.push_back(JHit_t(mc_hits.size() + 1,
1015  pmt->getID(),
1016  getHitType(CDG[i].type, true),
1017  track->id,
1018  t0 + (dz + D * getIndexOfRefraction()) / C + t1,
1019  n1));
1020 
1021  n0 -= n1;
1022  }
1023  }
1024 
1025  if (ns > NPE) {
1026  job.Fill((double) (340 + CDG[i].type));
1027  }
1028  }
1029  }
1030  catch(const exception& error) {
1031  job.Fill((double) (240 + CDG[i].type));
1032  }
1033  }
1034  }
1035  }
1036 
1037  if (!buffer.empty()) {
1038  job.Fill(9.0);
1039  }
1040 
1041  } else {
1042  job.Fill(21.0);
1043  }
1044  }
1045  }
1046  }
1047 
1048  if (!mc_hits.empty()) {
1049 
1050  mc_hits.merge(parameters.Tmax_ns);
1051 
1052  event.mc_hits.resize(mc_hits.size());
1053 
1054  copy(mc_hits.begin(), mc_hits.end(), event.mc_hits.begin());
1055  }
1056 
1057  timer.stop();
1058 
1059  if (has_neutrino(event)) {
1060  cpu.Fill(log10(get_neutrino(event).E), (double) timer.usec_ucpu * 1.0e-3);
1061  }
1062 
1063  if (event.mc_hits.size() >= numberOfHits) {
1064 
1065  outputFile.put(event);
1066 
1067  job.Fill(10.0);
1068  }
1069  }
1070  STATUS(endl);
1071 
1072  outputFile.put(job);
1073  outputFile.put(cpu);
1074  outputFile.put(rms);
1075  outputFile.put(rad);
1076  outputFile.put(*gRandom);
1077 
1078  outputFile.close();
1079 }
mc_usr_keys::energy_lost_in_can
const char *const energy_lost_in_can
Definition: io_ascii.hh:46
JSUPPORT::JMeta
Auxiliary class for ROOT I/O of application specific meta data.
Definition: JMeta.hh:70
JAANET::can::zmin
double zmin
Bottom [m].
Definition: JHead.hh:583
JGEOMETRY2D::JVector2D
Data structure for vector in two dimensions.
Definition: JVector2D.hh:32
JSUPPORT::JFileRecorder
Object writing to file.
Definition: JFileRecorder.hh:41
JPARSER::JParser
Utility class to parse command line options.
Definition: JParser.hh:1500
JPHYSICS::JCDFTable2D
Custom class for CDF table in 2 dimensions.
Definition: JCDFTable2D.hh:40
JLANG::JException
General exception.
Definition: JException.hh:23
JPHYSICS::JCDFTable
Multi-dimensional CDF table for arrival time of Cherenkov light.
Definition: JCDFTable.hh:53
JLANG::make_predicate
JPredicate< JResult_t T::*, JComparison::eq > make_predicate(JResult_t T::*member, const JResult_t value)
Helper method to create predicate for data member.
Definition: JPredicate.hh:128
main
int main(int argc, char *argv[])
Definition: Main.cc:15
JSupport.hh
ROOT TTree parameter settings of various packages.
JPHYSICS::EErad_t
static const JRadiationSource_t EErad_t
Definition: JRadiation.hh:510
JGEOMETRY3D::JTime::getT
double getT() const
Get time.
Definition: JGeometry3D/JTime.hh:122
JSIRENE::JPoint::getE
double getE() const
Get muon energy.
Definition: JSireneToolkit.hh:193
JSIRENE::JVertex::step
JVertex & step(const double ds)
Step using default ionisation energy loss.
Definition: JSireneToolkit.hh:397
JPDFToolkit.hh
Auxiliary methods for PDF calculations.
JDETECTOR::JModule
Data structure for a composite optical module.
Definition: JModule.hh:68
E
then usage E
Definition: JMuonPostfit.sh:35
JSIRENE::JHits_t::merge
void merge(const double Tmax_ns)
Merge hits on same PMT that are within given time window.
Definition: JSirene.hh:146
DZ
then let DZ
Definition: module-Z:fit.sh:71
JSIRENE::JTrk_t
Auxiliary class to set-up Trk.
Definition: JSirene.hh:186
Vec::z
double z
Definition: Vec.hh:14
JAANET::getTransformation
JTransformation3D getTransformation(const Trk &track)
Get transformation.
Definition: JAAnetToolkit.hh:285
JGEOMETRY2D::JCircle2D
Data structure for circle in two dimensions.
Definition: JCircle2D.hh:33
gmake_property
#define gmake_property(A)
macro to convert (template) parameter to JPropertiesElement object
Definition: JProperties.hh:1291
safetyFactor
double safetyFactor
safety factor for average CDF integral of optical module
Definition: JSirene.cc:68
JAANET::simul
Generator for simulation.
Definition: JHead.hh:511
JPHYSICS::getIndexOfRefraction
double getIndexOfRefraction()
Get average index of refraction of water corresponding to group velocity.
Definition: JPhysics/JConstants.hh:128
JGeane.hh
Energy loss of muon.
STATUS
#define STATUS(A)
Definition: JMessage.hh:63
JPHYSICS::SCATTERED_LIGHT_FROM_EMSHOWER
scattered light from EM shower
Definition: JPDFTypes.hh:38
JAANET::has_neutrino
bool has_neutrino(const Evt &evt)
Test whether given event has an incoming neutrino.
Definition: JAAnetToolkit.hh:438
JDETECTOR::JDetector
Detector data structure.
Definition: JDetector.hh:89
pythia.hh
This file contains converted Fortran code from km3.
JAANET::is_muon
bool is_muon(const Trk &track)
Test whether given track is a (anti-)muon.
Definition: JAAnetToolkit.hh:341
JPHYSICS::JACoeffSource
Implementation for calculation of ionization constant.
Definition: JACoeffSource.hh:48
JFileRecorder.hh
Recording of objects on file according a format that follows from the file name extension.
JSIRENE::getHitType
JHitType_t getHitType(const JPDFType_t pdf, const bool shower=false)
Get hit type corresponding to given PDF type.
Definition: JSireneToolkit.hh:122
JCALIBRATE::JParameters
Auxiliary class for PMT parameters including threshold.
Definition: JParameters.hh:21
JPHYSICS::getDeltaRaysFromTau
double getDeltaRaysFromTau(const double E)
Equivalent EM-shower energy due to delta-rays per unit tau track length.
Definition: JPDFToolkit.hh:95
JEEP::JProperties
Utility class to parse parameter values.
Definition: JProperties.hh:496
JSIRENE::JSeaWater::O
static double O()
Estimated mass fractions of chemical elements in sea water.
Definition: JSeaWater.hh:25
N
then JShowerPostfit f $INPUT_FILE o $OUTPUT_FILE N
Definition: JShowerPostfit.sh:95
parameters
*fatal Wrong number of arguments esac JCookie sh typeset Z DETECTOR typeset Z SOURCE_RUN typeset Z TARGET_RUN set_variable PARAMETERS_FILE $WORKDIR parameters
Definition: diff-Tuna.sh:38
Jpp.hh
Jpp environment information.
JPARSER::initialised
Empty structure for specification of parser element that is initialised (i.e. does not require input)...
Definition: JParser.hh:66
JPHYSICS::gRock
static const JGeane_t gRock(2.67e-1 *0.9 *DENSITY_ROCK, 3.40e-4 *1.2 *DENSITY_ROCK)
Function object for energy loss of muon in rock.
JPHYSICS::gWater
static const JGeaneWater gWater
Function object for energy loss of muon in sea water.
Definition: JGeane.hh:381
JSUPPORT::JLimit::max
static counter_type max()
Get maximum counter value.
Definition: JLimit.hh:117
JPHYSICS::DENSITY_SEA_WATER
static const double DENSITY_SEA_WATER
Fixed environment values.
Definition: JPhysics/JConstants.hh:38
JRadiation.hh
Muon radiative cross sections.
JAANET::JHead::simul
std::vector< JAANET::simul > simul
Definition: JHead.hh:1482
JSIRENE::pythia
static const JPythia pythia
Function object for relative light yield as a function of GEANT particle code.
Definition: JPythia.hh:96
JAANET::getTime
double getTime(const Hit &hit)
Get true time of hit.
Definition: JAAnetToolkit.hh:95
outputFile
string outputFile
Definition: JDAQTimesliceSelector.cc:37
JGEOMETRY2D::JVector2D::getY
double getY() const
Get y position.
Definition: JVector2D.hh:74
JDetector.hh
Data structure for detector geometry and calibration.
APPLICATION_JSIRENE
static const char *const APPLICATION_JSIRENE
detector simulation
Definition: applications.hh:19
JProperties.hh
Utility class to parse parameter values.
JPHYSICS::DIRECT_LIGHT_FROM_MUON
direct light from muon
Definition: JPDFTypes.hh:26
JAANET::coord_origin
Coordinate origin.
Definition: JHead.hh:715
JPHYSICS::JRadiationFunction
Fast implementation of class JRadiation.
Definition: JRadiationFunction.hh:32
JPHYSICS::JRadiationSource
Implementation for calculation of inverse interaction length and shower energy.
Definition: JRadiationSource.hh:89
JFunctionalMap_t.hh
Various implementations of functional maps.
JSIRENE::JHits_t
Auxiliary data structure for list of hits with hit merging capability.
Definition: JSirene.hh:135
JAANET::JPDB::getInstance
static const JPDB & getInstance()
Get particle data book.
Definition: JPDB.hh:125
JSIRENE::JSeaWater::H
static double H()
Definition: JSeaWater.hh:26
JPDFTypes.hh
Numbering scheme for PDF types.
JDate.hh
Date and time functions.
JAANET::is_neutrino
bool is_neutrino(const Trk &track)
Test whether given track is a neutrino.
Definition: JAAnetToolkit.hh:323
JPHYSICS::C
static const double C
Physics constants.
Definition: JPhysics/JConstants.hh:25
JDetectorSubset.hh
Auxiliary class to extract a subset of optical modules from a detector.
JPHYSICS::SCATTERED_LIGHT_FROM_MUON
scattered light from muon
Definition: JPDFTypes.hh:27
JSUPPORT::JLimit
Auxiliary class for defining the range of iterations of objects.
Definition: JLimit.hh:41
JTOOLS::JPolint1FunctionalGridMap
Type definition of a 1st degree polynomial interpolation based on a JGridMap implementation.
Definition: JFunctionalMap_t.hh:91
JFunction1D_t.hh
JPHYSICS::getThetaMCS
double getThetaMCS(const double E, const double x, const double X0, const double M, const double Q)
Get multiple Coulomb scattering angle.
Definition: JPhysicsSupportkit.hh:40
JAANET::JHead::can
JAANET::can can
Definition: JHead.hh:1488
JPHYSICS::JDISSource
Implementation for calculation of inverse interaction length and shower energy due to deep-inelastic ...
Definition: JRadiationSource.hh:160
Vec
The Vec class is a straightforward 3-d vector, which also works in pyroot.
Definition: Vec.hh:12
JAANET::JHead::push
void push(T JHead::*pd)
Push given data member to Head.
Definition: JHead.hh:1290
JPrint.hh
I/O formatting auxiliaries.
JGEOMETRY3D::JCylinder3D
Cylinder object.
Definition: JCylinder3D.hh:39
JAANET::detector
Detector file.
Definition: JHead.hh:224
JEEP::getGITVersion
std::string getGITVersion(const std::string &tag)
Get GIT version for given GIT tag.
Definition: Jeep/JGITTags.hh:34
JAANET::getKineticEnergy
double getKineticEnergy(const double E, const double m)
Get kinetic energy of particle with given mass.
Definition: JAAnetToolkit.hh:656
JPHYSICS::JRadiation
Auxiliary class for the calculation of the muon radiative cross sections.
Definition: JRadiation.hh:34
make_field
#define make_field(A,...)
macro to convert parameter to JParserTemplateElement object
Definition: JParser.hh:1961
log10
set_variable E_E log10(E_{fit}/E_{#mu})"
JTOOLS::JPolint1FunctionalMap
Type definition of a 1st degree polynomial interpolation based on a JMap implementation.
Definition: JFunctionalMap_t.hh:55
JPHYSICS::geanz
static const JGeanz geanz(1.85, 0.62, 0.54)
Function object for longitudinal EM-shower profile.
JGEOMETRY2D::JVector2D::getX
double getX() const
Get x position.
Definition: JVector2D.hh:63
JAANET::getAxis
JAxis3D getAxis(const Trk &track)
Get axis.
Definition: JAAnetToolkit.hh:249
JSIRENE::JTrack::getE
double getE(const double z) const
Get muon energy at given position along trajectory.
Definition: JSireneToolkit.hh:237
JEEP::JTimer
Auxiliary class for CPU timing and usage.
Definition: JTimer.hh:32
JMeta.hh
ROOT I/O of application specific meta data.
JAANET::getPosition
JPosition3D getPosition(const Vec &pos)
Get position.
Definition: JAAnetToolkit.hh:177
JPHYSICS::SCATTERED_LIGHT_FROM_DELTARAYS
scattered light from delta-rays
Definition: JPDFTypes.hh:33
JAAnetToolkit.hh
Definition of hit and track types and auxiliary methods for handling Monte Carlo data.
NOTICE
#define NOTICE(A)
Definition: JMessage.hh:64
ERROR
#define ERROR(A)
Definition: JMessage.hh:66
JPHYSICS::DIRECT_LIGHT_FROM_EMSHOWER
direct light from EM shower
Definition: JPDFTypes.hh:37
JMATH::PI
static const double PI
Mathematical constants.
Definition: JMath/JConstants.hh:20
JTOOLS::JRange::constrain
T constrain(argument_type x) const
Constrain value to range.
Definition: JRange.hh:350
JSIRENE::JTrack
Muon trajectory.
Definition: JSireneToolkit.hh:218
JGEOMETRY3D::JCylinder3D::addMargin
void addMargin(const double D)
Add (safety) margin.
Definition: JCylinder3D.hh:173
JGEOMETRY3D::JVector3D::getY
double getY() const
Get y position.
Definition: JVector3D.hh:104
debug
int debug
debug level
Definition: JSirene.cc:66
JPHYSICS::Brems_t
static const JRadiationSource_t Brems_t
Definition: JRadiation.hh:511
JPHYSICS::JPDFType_t
JPDFType_t
PDF types.
Definition: JPDFTypes.hh:24
JSYSTEM::getDate
const char * getDate(const JDateAndTimeFormat option=ISO8601)
Get ASCII formatted date.
Definition: JSystem/JDate.hh:35
JTOOLS::JMAPLIST
Auxiliary class for recursive map list generation.
Definition: JMapList.hh:108
R
then usage $script[distance] fi case set_variable R
Definition: JDrawLED.sh:43
JMessage.hh
General purpose messaging.
JSIRENE::JPoint::getEs
double getEs() const
Get shower energy.
Definition: JSireneToolkit.hh:204
JDETECTOR::JDetectorSubset
Detector subset with binary search functionality.
Definition: JDetectorSubset.hh:119
JDETECTOR::JDetectorSubset_t
Detector subset without binary search functionality.
Definition: JDetectorSubset.hh:38
JAANET::JHead
Monte Carlo run header.
Definition: JHead.hh:1165
JSIRENE::JVertex
Vertex of energy loss of muon.
Definition: JSireneToolkit.hh:305
JGEOMETRY3D::JVersor3Z::getDirection
const JVersor3Z & getDirection() const
Get direction.
Definition: JVersor3Z.hh:81
Head
The Head class reflects the header of Monte-Carlo event files, which consists of keys (also referred ...
Definition: Head.hh:67
JSIRENE::JSeaWater::Cl
static double Cl()
Definition: JSeaWater.hh:28
FATAL
#define FATAL(A)
Definition: JMessage.hh:67
JMultipleFileScanner.hh
Scanning of objects from multiple files according a format that follows from the extension of each fi...
Trk::id
int id
track identifier
Definition: Trk.hh:16
JPHYSICS::JCDFTable1D
Custom class for CDF table in 1 dimension.
Definition: JCDFTable1D.hh:39
JPHYSICS::DIRECT_LIGHT_FROM_DELTARAYS
direct light from delta-rays
Definition: JPDFTypes.hh:32
range
z range($ZMAX-$ZMIN)< $MINIMAL_DZ." fi fi typeset -Z 4 STRING typeset -Z 2 FLOOR JPlot1D -f $
Definition: module-Z:fit.sh:118
JSIRENE::JVertex::applyEloss
void applyEloss(const JVersor3Z &Ts, const double Es)
Apply shower energy loss.
Definition: JSireneToolkit.hh:381
JLANG::JException::what
virtual const char * what() const override
Get error message.
Definition: JException.hh:48
JAANET::JHead::detector
std::vector< JAANET::detector > detector
Definition: JHead.hh:1478
JSIRENE::getNumberOfPhotoElectrons
int getNumberOfPhotoElectrons(const double NPE, const int N, const double npe)
Get number of photo-electrons of a hit given the expectation values of the number of photo-electrons ...
Definition: JSireneToolkit.hh:64
JDETECTOR::load
void load(const std::string &file_name, JDetector &detector)
Load detector from input file.
Definition: JDetectorToolkit.hh:478
JPHYSICS::JGeanz::getMaximum
double getMaximum(const double E) const
Get depth of shower maximum.
Definition: JGeanz.hh:162
JSUPPORT::JMultipleFileScanner
General purpose class for object reading from a list of file names.
Definition: JMultipleFileScanner.hh:199
JSIRENE::JTrack::getPosition
JVector2D getPosition(const double z) const
Get muon position at given position along trajectory.
Definition: JSireneToolkit.hh:261
JParser.hh
Utility class to parse command line options.
Evt::mc_hits
std::vector< Hit > mc_hits
MC: list of MC truth hits.
Definition: Evt.hh:45
JPHYSICS::is_scattered
bool is_scattered(const int pdf)
Test if given PDF type corresponds to scattered light.
Definition: JPDFTypes.hh:165
JDETECTOR::JModule::transform
void transform(const JRotation3D &R, const JVector3D &pos)
Transformation of geometry (see method JGEOMETRY3D::JPosition3D::transform(const JRotation3D&amp;, const JVector3D&amp;)).
Definition: JModule.hh:346
JPHYSICS::is_deltarays
bool is_deltarays(const int pdf)
Test if given PDF type corresponds to Cherenkov light from delta-rays.
Definition: JPDFTypes.hh:151
JSIRENE::JHit_t
Auxiliary class to set-up Hit.
Definition: JSirene.hh:55
JGEOMETRY3D::JVector3D::getX
double getX() const
Get x position.
Definition: JVector3D.hh:94
JPHYSICS::getDeltaRaysFromMuon
double getDeltaRaysFromMuon(const double E)
Equivalent EM-shower energy due to delta-rays per unit muon track length.
Definition: JPDFToolkit.hh:67
JAANET::copy
void copy(const Head &from, JHead &to)
Copy header from from to to.
Definition: JHead.cc:139
JSYSTEM::ls
Auxiliary data structure to list files in directory.
Definition: JSystemToolkit.hh:302
JEEP::getFilename
std::string getFilename(const std::string &file_name)
Get file name part, i.e. part after last JEEP::PATHNAME_SEPARATOR if any.
Definition: JeepToolkit.hh:128
JPHYSICS::getTanThetaC
double getTanThetaC()
Get average tangent of Cherenkov angle of water corresponding to group velocity.
Definition: JPhysics/JConstants.hh:150
Z
do set_variable MODULE getModule a $WORKDIR detector_a datx L $STRING JEditDetector a $WORKDIR detector_a datx M $MODULE setz o $WORKDIR detector_a datx JEditDetector a $WORKDIR detector_b datx M $MODULE setz o $WORKDIR detector_b datx done echo Output stored at $WORKDIR detector_a datx and $WORKDIR tripod_a txt JDrawDetector2D a $WORKDIR detector_a datx a $WORKDIR detector_b datx L BL o detector $FORMAT $BATCH JDrawDetector2D T $WORKDIR tripod_a txt T $WORKDIR tripod_b txt L BL o tripod $FORMAT $BATCH JCompareDetector a $WORKDIR detector_a datx b $WORKDIR detector_b datx o $WORKDIR abc root &dev null for KEY in X Y Z
Definition: JAlignDetector.sh:81
JSIRENE::JSeaWater::Na
static double Na()
Definition: JSeaWater.hh:27
JGEOMETRY3D::JPosition3D
Data structure for position in three dimensions.
Definition: JPosition3D.hh:36
JSUPPORT::JLimit::getLimit
const JLimit & getLimit() const
Get limit.
Definition: JLimit.hh:73
JGeanz.hh
Longitudinal emission profile EM-shower.
JPHYSICS::JGeanz::getLength
double getLength(const double E, const double P, const double eps=1.0e-3) const
Get shower length for a given integrated probability.
Definition: JGeanz.hh:122
JAANET::get_neutrino
const Trk & get_neutrino(const Evt &evt)
Get incoming neutrino.
Definition: JAAnetToolkit.hh:449
detector
do set_variable DETECTOR_TXT $WORKDIR detector
Definition: detector-XY:fit1d.sh:38
JAANET::is_tau
bool is_tau(const Trk &track)
Test whether given track is a (anti-)tau.
Definition: JAAnetToolkit.hh:349
JPHYSICS::GNrad_t
static const JRadiationSource_t GNrad_t
Definition: JRadiation.hh:512
JSIRENE::JVertex::getRange
double getRange() const
Get visible range of muon using default ionisation energy loss.
Definition: JSireneToolkit.hh:339
JAANET::JHead::coord_origin
JAANET::coord_origin coord_origin
Definition: JHead.hh:1491
JGEOMETRY3D::JVersor3Z
Data structure for normalised vector in positive z-direction.
Definition: JVersor3Z.hh:39
in
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY JAcoustics sh $DETECTOR_ID source JAcousticsToolkit sh CHECK_EXIT_CODE typeset A EMITTERS get_tripods $WORKDIR tripod txt EMITTERS get_transmitters $WORKDIR transmitter txt EMITTERS for EMITTER in
Definition: JCanberra.sh:46
JGEOMETRY3D::JTransformation3D::transform
JPosition3D transform(const JPosition3D &pos) const
Transform position.
Definition: JTransformation3D.hh:49
D
do echo Generating $dir eval D
Definition: JDrawLED.sh:53
Head::coord_origin
Vec coord_origin() const
Get coordinate origin.
Definition: Head.hh:393
numberOfBins
int numberOfBins
number of bins for average CDF integral of optical module
Definition: JSirene.cc:67
JGEOMETRY3D::JVector3D::getZ
double getZ() const
Get z position.
Definition: JVector3D.hh:115
Evt::mc_trks
std::vector< Trk > mc_trks
MC: list of MC truth tracks.
Definition: Evt.hh:46
GAUSS_LEGENDRE::epsilon
const double epsilon
Definition: JQuadrature.cc:21
JTOOLS::JHermiteSplineFunction1D_t
Type definition of a spline interpolation method based on a JCollection with double result type...
Definition: JFunction1D_t.hh:92
Evt
The Evt class respresent a Monte Carlo (MC) event as well as an offline event.
Definition: Evt.hh:19
DEBUG
#define DEBUG(A)
Message macros.
Definition: JMessage.hh:62
JAANET::can::zmax
double zmax
Top [m].
Definition: JHead.hh:584
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