Jpp  17.1.0
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JSirene.cc
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1 #include <string>
2 #include <iostream>
3 #include <iomanip>
4 #include <vector>
5 #include <limits>
6 
7 #include "TROOT.h"
8 #include "TFile.h"
9 #include "TH1D.h"
10 #include "TH2D.h"
11 #include "TProfile.h"
12 #include "TProfile2D.h"
13 #include "TRandom3.h"
14 
15 #include "km3net-dataformat/offline/Head.hh"
16 #include "km3net-dataformat/offline/MultiHead.hh"
17 #include "km3net-dataformat/offline/Evt.hh"
18 #include "km3net-dataformat/definitions/applications.hh"
19 #include "km3net-dataformat/definitions/trkmembers.hh"
20 
21 #include "JLang/JSharedPointer.hh"
22 #include "JLang/Jpp.hh"
23 #include "JLang/JPredicate.hh"
24 #include "JSystem/JDate.hh"
25 
26 #include "JPhysics/JCDFTable.hh"
27 #include "JPhysics/JPDFTypes.hh"
28 #include "JPhysics/JPDFToolkit.hh"
29 #include "JPhysics/JGeane.hh"
30 #include "JPhysics/JGeanz.hh"
31 #include "JPhysics/JRadiation.hh"
32 #include "JPhysics/JRadiationFunction.hh"
33 #include "JPhysics/JRadiationSource.hh"
34 #include "JPhysics/JACoeffSource.hh"
35 #include "JPhysics/JPhysicsSupportkit.hh"
36 #include "JTools/JFunction1D_t.hh"
37 #include "JTools/JFunctionalMap_t.hh"
38 
39 #include "JAAnet/JAAnetToolkit.hh"
40 #include "JAAnet/JPDB.hh"
41 
42 #include "JSirene/JSirene.hh"
43 #include "JSirene/pythia.hh"
44 #include "JSirene/JSeaWater.hh"
45 #include "JSirene/JCDFTable1D.hh"
46 #include "JSirene/JCDFTable2D.hh"
47 #include "JSirene/JSireneToolkit.hh"
48 
49 #include "JDetector/JDetector.hh"
50 #include "JDetector/JDetectorSubset.hh"
51 #include "JDetector/JDetectorToolkit.hh"
52 #include "JGeometry3D/JCylinder3D.hh"
53 
54 #include "JSupport/JMultipleFileScanner.hh"
55 #include "JSupport/JFileRecorder.hh"
56 #include "JSupport/JMonteCarloFileSupportkit.hh"
57 #include "JSupport/JSupport.hh"
58 #include "JSupport/JMeta.hh"
59 
60 #include "Jeep/JProperties.hh"
61 #include "Jeep/JPrint.hh"
62 #include "Jeep/JTimer.hh"
63 #include "Jeep/JParser.hh"
64 #include "Jeep/JMessage.hh"
65 
66 
67 int debug; //!< debug level
68 int numberOfBins = 200; //!< number of bins for average CDF integral of optical module
69 double safetyFactor = 1.7; //!< safety factor for average CDF integral of optical module
70 
71 
72 namespace {
73 
74  using namespace JPP;
75 
76  typedef JHermiteSplineFunction1D_t JFunction1D_t;
77  typedef JMAPLIST<JPolint1FunctionalMap,
78  JPolint1FunctionalGridMap,
79  JPolint1FunctionalGridMap>::maplist J3DMap_t;
80  typedef JMAPLIST<JPolint1FunctionalMap,
81  JPolint1FunctionalMap,
82  JPolint1FunctionalGridMap,
83  JPolint1FunctionalGridMap>::maplist J4DMap_t;
84 
85  typedef JCDFTable<JFunction1D_t, J3DMap_t> JCDF4D_t; // muon
86  typedef JCDFTable<JFunction1D_t, J4DMap_t> JCDF5D_t; // shower
87 
88  typedef JCDFTable1D<JFunction1D_t::argument_type, JFunction1D_t::result_type> JCDF1D_t; // muon
89  typedef JCDFTable2D<JFunction1D_t::argument_type, JFunction1D_t::result_type> JCDF2D_t; // shower
90 
91 
92 
93  /**
94  * Auxiliary class for CDF tables.
95  */
96  template<class function_type, // CDF function
97  class integral_type> // CDF integral
98  struct JCDFHelper {
99  /**
100  * Constructor.
101  *
102  * \param file_descriptor file name descriptor
103  * \param type PDF type
104  */
105  JCDFHelper(const std::string& file_descriptor, const JPDFType_t type)
106  {
107  using namespace std;
108 
109  this->type = type;
110 
111  const string file_name = getFilename(file_descriptor, this->type);
112 
113  STATUS("loading input from file " << file_name << "... " << flush);
114 
115  try {
116  function.load(file_name.c_str());
117  }
118  catch(const JException& error) {
119  FATAL(error.what() << endl);
120  }
121 
122  new (&integral) integral_type(function, numberOfBins, safetyFactor);
123 
124  STATUS("OK" << endl);
125  }
126 
127  JPDFType_t type;
128  function_type function;
129  integral_type integral;
130  };
131 
132 
133  typedef JCDFHelper<JCDF4D_t, JCDF1D_t> JCDF_t; //!< muon light
134  typedef JCDFHelper<JCDF5D_t, JCDF2D_t> JCDG_t; //!< shower light
135 
136 
137  /**
138  * Get random direction.
139  *
140  * \param t2 square of theta RMS [rad^2]
141  * \return direction
142  */
143  inline JVersor3Z getRandomDirection(const double t2)
144  {
145  const double tv = sqrt(gRandom->Exp(1.0) * t2);
146  const double phi = gRandom->Uniform(-PI, +PI);
147 
148  return JVersor3Z(tv*cos(phi), tv*sin(phi));
149  }
150 }
151 
152 
153 /**
154  * \file
155  *
156  * Main program to simulate detector response to muons and showers.
157  *
158  * \image html sirene.png "Picture by Claudine Colnard"
159  *
160  * Note that CDF file descriptor should contain the wild card character JPHYSICS::WILD_CARD;\n
161  * The file names are obtained by replacing JPHYSICS::WILD_CARD; with
162  * - JPHYSICS::DIRECT_LIGHT_FROM_MUON;
163  * - JPHYSICS::SCATTERED_LIGHT_FROM_MUON;
164  * - JPHYSICS::DIRECT_LIGHT_FROM_DELTARAYS;
165  * - JPHYSICS::SCATTERED_LIGHT_FROM_DELTARAYS;
166  * - JPHYSICS::DIRECT_LIGHT_FROM_EMSHOWER; and
167  * - JPHYSICS::SCATTERED_LIGHT_FROM_EMSHOWER,
168  * respectively.
169  *
170  * The CDF tables can be produced with the script <tt>JMakePDF.sh</tt>:
171  * <pre>
172  * JMakePDF.sh -P
173  * </pre>
174  * (option <tt>-h</tt> will print all available options).
175  * Note that the script will launch a large number of processes (<tt>JMakePDF</tt> and <tt>JMakePDG</tt>)\n
176  * which may take a considerable amount of time to completion.\n
177  * On a standard desktop, all jobs should be finished within 1/2 a day or so.
178  *
179  * The same script should then be run with option <tt>-M</tt> to merge the PDF files, i.e:
180  * <pre>
181  * JMakePDF.sh -M
182  * </pre>
183  *
184  * CDF tables are obtained by running the same script with option <tt>-C</tt>, i.e:
185  * <pre>
186  * JMakePDF.sh -C
187  * </pre>
188  *
189  * The various PDFs can be drawn using the <tt>JDrawPDF</tt> or <tt>JDrawPDG</tt> applications.\n
190  * The tabulated PDFs can be plotted using the <tt>JPlotPDF</tt> or <tt>JPlotPDG</tt> applications.\n
191  * The tabulated CDFs can be plotted using the <tt>JPlotCDF</tt> or <tt>JPlotCDG</tt> applications.
192  * \author mdejong
193  */
194 int main(int argc, char **argv)
195 {
196  using namespace std;
197  using namespace JPP;
198 
199  string fileDescriptor;
200  JMultipleFileScanner<JAAnetTypes_t> inputFile;
201  JFileRecorder <JTYPELIST<JAAnetTypes_t, JMeta, JRootTypes_t>::typelist> outputFile;
202  JLimit_t& numberOfEvents = inputFile.getLimit();
203  string detectorFile;
204  JParameters parameters;
205  bool writeEMShowers;
206  bool keep;
207  size_t numberOfHits;
208  double factor;
209  UInt_t seed;
210 
211  try {
212 
213  JProperties properties;
214 
215  properties.insert(gmake_property(parameters.Ecut_GeV));
216  properties.insert(gmake_property(parameters.Emin_GeV));
217  properties.insert(gmake_property(parameters.Dmin_m));
218  properties.insert(gmake_property(parameters.Emax_GeV));
219  properties.insert(gmake_property(parameters.Dmax_m));
220  properties.insert(gmake_property(parameters.Tmax_ns));
221  properties.insert(gmake_property(parameters.Nmax_npe));
222 
223  properties.insert(gmake_property(numberOfBins));
224  properties.insert(gmake_property(safetyFactor));
225 
226  JParser<> zap("Main program to simulate detector response to muons and showers.");
227 
228  zap['@'] = make_field(properties) = JPARSER::initialised();
229  zap['F'] = make_field(fileDescriptor, "file name descriptor for CDF tables");
230  zap['f'] = make_field(inputFile) = JPARSER::initialised();
231  zap['o'] = make_field(outputFile) = "sirene.root";
232  zap['n'] = make_field(numberOfEvents) = JLimit::max();
233  zap['a'] = make_field(detectorFile) = "";
234  zap['s'] = make_field(writeEMShowers, "store generated EM showers in event");
235  zap['k'] = make_field(keep, "keep position of tracks");
236  zap['N'] = make_field(numberOfHits, "minimum number of hits to output event") = 1;
237  zap['U'] = make_field(factor, "scaling factor applied to light yields") = 1.0;
238  zap['S'] = make_field(seed) = 0;
239  zap['d'] = make_field(debug) = 1;
240 
241  zap(argc, argv);
242  }
243  catch(const exception &error) {
244  FATAL(error.what() << endl);
245  }
246 
247 
248  gRandom->SetSeed(seed);
249 
250 
251  const JMeta meta(argc, argv);
252 
253  const double Zbed = 0.0; // level of seabed [m]
254 
255  vector<JCDF_t> CDF;
256  vector<JCDG_t> CDG;
257 
258  CDF.push_back(JCDF_t(fileDescriptor, DIRECT_LIGHT_FROM_MUON));
259  CDF.push_back(JCDF_t(fileDescriptor, SCATTERED_LIGHT_FROM_MUON));
260  CDF.push_back(JCDF_t(fileDescriptor, DIRECT_LIGHT_FROM_DELTARAYS));
261  CDF.push_back(JCDF_t(fileDescriptor, SCATTERED_LIGHT_FROM_DELTARAYS));
262 
263  CDG.push_back(JCDG_t(fileDescriptor, DIRECT_LIGHT_FROM_EMSHOWER));
264  CDG.push_back(JCDG_t(fileDescriptor, SCATTERED_LIGHT_FROM_EMSHOWER));
265 
266 
267  double maximal_road_width = 0.0; // road width [m]
268  double maximal_distance = 0.0; // road width [m]
269 
270  for (size_t i = 0; i != CDF.size(); ++i) {
271 
272  DEBUG("Range CDF["<< CDF[i].type << "] " << CDF[i].function.intensity.getXmax() << " m" << endl);
273 
274  maximal_road_width = max(maximal_road_width, CDF[i].function.intensity.getXmax());
275  }
276 
277  for (size_t i = 0; i != CDG.size(); ++i) {
278 
279  DEBUG("Range CDG["<< CDG[i].type << "] " << CDG[i].function.intensity.getXmax() << " m" << endl);
280 
281  if (!is_scattered(CDF[i].type)) {
282  maximal_road_width = max(maximal_road_width, CDG[i].function.intensity.getXmax());
283  }
284 
285  maximal_distance = max(maximal_distance, CDG[i].function.intensity.getXmax());
286  }
287 
288  NOTICE("Maximal road width [m] " << maximal_road_width << endl);
289  NOTICE("Maximal distance [m] " << maximal_distance << endl);
290 
291 
292  if (detectorFile == "" || inputFile.empty()) {
293  STATUS("Nothing to be done." << endl);
294  return 0;
295  }
296 
297  JDetector detector;
298 
299  try {
300 
301  STATUS("Load detector... " << flush);
302 
303  load(detectorFile, detector);
304 
305  STATUS("OK" << endl);
306  }
307  catch(const JException& error) {
308  FATAL(error);
309  }
310 
311  // remove empty modules
312 
313  for (JDetector::iterator module = detector.begin(); module != detector.end(); ) {
314  if (!module->empty())
315  ++module;
316  else
317  module = detector.erase(module);
318  }
319 
320  vector< JSharedPointer<JRadiationInterface> > radiation;
321  vector< JSharedPointer<JACoeffInterface> > ionization;
322 
323  if (true) {
324 
325  STATUS("Setting up radiation tables... " << flush);
326 
327  //More accuracy can be achieved uncommenting the commented elements and its initializations, remember to do the same in JSeawater.hh (The code will run slower).
328 
329  const JRadiation hydrogen ( 1.0, 1.0, 40, 0.01, 0.1, 0.1);
330  const JRadiation oxygen ( 8.0, 16.0, 40, 0.01, 0.1, 0.1);
331  const JRadiation chlorine (17.0, 35.5, 40, 0.01, 0.1, 0.1);
332  const JRadiation sodium (11.0, 23.0, 40, 0.01, 0.1, 0.1);
333  /* const JRadiation calcium (20.0, 40.0, 40, 0.01, 0.1, 0.1);
334  const JRadiation magnesium(12.0, 24.3, 40, 0.01, 0.1, 0.1);
335  const JRadiation potassium(19.0, 39.0, 40, 0.01, 0.1, 0.1);
336  const JRadiation sulphur (16.0, 32.0, 40, 0.01, 0.1, 0.1);
337  */
338 
339  JSharedPointer<JRadiation> Hydrogen (new JRadiationFunction(hydrogen, 300, 0.2, 1.0e11));
340  JSharedPointer<JRadiation> Oxygen (new JRadiationFunction(oxygen, 300, 0.2, 1.0e11));
341  JSharedPointer<JRadiation> Chlorine (new JRadiationFunction(chlorine, 300, 0.2, 1.0e11));
342  JSharedPointer<JRadiation> Sodium (new JRadiationFunction(sodium, 300, 0.2, 1.0e11));
343  /* JSharedPointer<JRadiation> Calcium (new JRadiationFunction(calcium, 300, 0.2, 1.0e11));
344  JSharedPointer<JRadiation> Magnesium(new JRadiationFunction(magnesium,300, 0.2, 1.0e11));
345  JSharedPointer<JRadiation> Potassium(new JRadiationFunction(potassium,300, 0.2, 1.0e11));
346  JSharedPointer<JRadiation> Sulphur (new JRadiationFunction(sulphur, 300, 0.2, 1.0e11));
347  */
348 
349  radiation.push_back(new JRadiationSource(11, Oxygen, DENSITY_SEA_WATER * JSeaWater::O(), EErad_t));
350  radiation.push_back(new JRadiationSource(12, Chlorine, DENSITY_SEA_WATER * JSeaWater::Cl(), EErad_t));
351  radiation.push_back(new JRadiationSource(13, Hydrogen, DENSITY_SEA_WATER * JSeaWater::H(), EErad_t));
352  radiation.push_back(new JRadiationSource(14, Sodium, DENSITY_SEA_WATER * JSeaWater::Na(), EErad_t));
353  /* radiation.push_back(new JRadiationSource(15, Calcium, DENSITY_SEA_WATER * JSeaWater::Ca(), EErad_t));
354  radiation.push_back(new JRadiationSource(16, Magnesium,DENSITY_SEA_WATER * JSeaWater::Mg(), EErad_t));
355  radiation.push_back(new JRadiationSource(17, Potassium,DENSITY_SEA_WATER * JSeaWater::K(), EErad_t));
356  radiation.push_back(new JRadiationSource(18, Sulphur, DENSITY_SEA_WATER * JSeaWater::S(), EErad_t));
357  */
358 
359  radiation.push_back(new JRadiationSource(21, Oxygen, DENSITY_SEA_WATER * JSeaWater::O(), Brems_t));
360  radiation.push_back(new JRadiationSource(22, Chlorine, DENSITY_SEA_WATER * JSeaWater::Cl(), Brems_t));
361  radiation.push_back(new JRadiationSource(23, Hydrogen, DENSITY_SEA_WATER * JSeaWater::H(), Brems_t));
362  radiation.push_back(new JRadiationSource(24, Sodium, DENSITY_SEA_WATER * JSeaWater::Na(), Brems_t));
363  /* radiation.push_back(new JRadiationSource(25, Calcium, DENSITY_SEA_WATER * JSeaWater::Ca(), Brems_t));
364  radiation.push_back(new JRadiationSource(26, Magnesium,DENSITY_SEA_WATER * JSeaWater::Mg(), Brems_t));
365  radiation.push_back(new JRadiationSource(27, Potassium,DENSITY_SEA_WATER * JSeaWater::K(), Brems_t));
366  radiation.push_back(new JRadiationSource(28, Sulphur, DENSITY_SEA_WATER * JSeaWater::S(), Brems_t));
367  */
368 
369  radiation.push_back(new JRadiationSource(31, Oxygen, DENSITY_SEA_WATER * JSeaWater::O(), GNrad_t));
370  radiation.push_back(new JRadiationSource(32, Chlorine, DENSITY_SEA_WATER * JSeaWater::Cl(), GNrad_t));
371  radiation.push_back(new JRadiationSource(33, Hydrogen, DENSITY_SEA_WATER * JSeaWater::H(), GNrad_t));
372  radiation.push_back(new JRadiationSource(34, Sodium, DENSITY_SEA_WATER * JSeaWater::Na(), GNrad_t));
373  /* radiation.push_back(new JRadiationSource(35, Calcium, DENSITY_SEA_WATER * JSeaWater::Ca(), GNrad_t));
374  radiation.push_back(new JRadiationSource(36, Magnesium,DENSITY_SEA_WATER * JSeaWater::Mg(), GNrad_t));
375  radiation.push_back(new JRadiationSource(37, Potassium,DENSITY_SEA_WATER * JSeaWater::K(), GNrad_t));
376  radiation.push_back(new JRadiationSource(38, Sulphur, DENSITY_SEA_WATER * JSeaWater::S(), GNrad_t));
377  */
378  radiation.push_back(new JDISSource(100, DENSITY_SEA_WATER));
379 
380  ionization.push_back(new JACoeffSource(Oxygen, DENSITY_SEA_WATER * JSeaWater::O()));
381  ionization.push_back(new JACoeffSource(Chlorine, DENSITY_SEA_WATER * JSeaWater::Cl()));
382  ionization.push_back(new JACoeffSource(Hydrogen, DENSITY_SEA_WATER * JSeaWater::H()));
383  ionization.push_back(new JACoeffSource(Sodium, DENSITY_SEA_WATER * JSeaWater::Na()));
384  /* ionization.push_back(new JACoeffSource(Calcium, DENSITY_SEA_WATER * JSeaWater::Ca()));
385  ionization.push_back(new JACoeffSource(Magnesium,DENSITY_SEA_WATER * JSeaWater::Mg()));
386  ionization.push_back(new JACoeffSource(Potassium,DENSITY_SEA_WATER * JSeaWater::K()));
387  ionization.push_back(new JACoeffSource(Sulphur, DENSITY_SEA_WATER * JSeaWater::S()));
388  */
389 
390  STATUS("OK" << endl);
391  }
392 
393 
394  Vec center(0,0,0);
395  Head header;
396 
397  try {
398 
399  header = inputFile.getHeader();
400 
401  JHead buffer(header);
402 
403  center = get<Vec>(buffer);
404 
405  buffer.simul.push_back(JAANET::simul());
406 
407  buffer.simul.rbegin()->program = APPLICATION_JSIRENE;
408  buffer.simul.rbegin()->version = getGITVersion();
409  buffer.simul.rbegin()->date = getDate();
410  buffer.simul.rbegin()->time = getTime();
411 
412  buffer.detector.push_back(JAANET::detector());
413 
414  buffer.detector.rbegin()->program = APPLICATION_JSIRENE;
415  buffer.detector.rbegin()->filename = detectorFile;
416 
417  buffer.push(&JHead::simul);
418  buffer.push(&JHead::detector);
419 
420  if (!keep) {
421 
422  buffer.coord_origin = coord_origin(0.0, 0.0, 0.0);
423  buffer.can.zmin += center.z;
424  buffer.can.zmax += center.z;
425 
426  buffer.push(&JHead::coord_origin);
427  buffer.push(&JHead::can);
428  }
429 
430  const JCircle2D circle(detector.begin(), detector.end());
431 
432  center += Vec(circle.getX(), circle.getY(), 0.0);
433 
434  copy(buffer, header);
435  }
436  catch(const JException& error) {
437  FATAL(error);
438  }
439 
440  if (!keep)
441  NOTICE("Offset applied to true tracks is: " << center << endl);
442  else
443  NOTICE("No offset applied to true tracks." << endl);
444 
445  JCylinder3D cylinder(detector.begin(), detector.end());
446 
447  cylinder.addMargin(maximal_distance);
448 
449  if (cylinder.getZmin() < Zbed) {
450  cylinder.setZmin(Zbed);
451  }
452 
453  NOTICE("Light generation volume: " << cylinder << endl);
454 
455  TH1D job("job", NULL, 400, 0.5, 400.5);
456  TProfile cpu("cpu", NULL, 16, 0.0, 8.0);
457  TProfile2D rms("rms", NULL, 16, 0.0, 8.0, 201, -0.5, 200.5);
458  TProfile2D rad("rad", NULL, 16, 0.0, 8.0, 201, -0.5, 200.5);
459 
460 
461  outputFile.open();
462 
463  if (!outputFile.is_open()) {
464  FATAL("Error opening file " << outputFile << endl);
465  }
466 
467  outputFile.put(meta);
468  outputFile.put(header);
469  outputFile.put(*gRandom);
470 
471  const double epsilon = 1.0e-6; //
472  const JRange<double> python(epsilon, PI - epsilon); // constrain PMT angles
473 
474  JTimer timer;
475 
476  for (JMultipleFileScanner<Evt>& in = inputFile; in.hasNext(); ) {
477 
478  STATUS("event: " << setw(10) << in.getCounter() << '\r'); DEBUG(endl);
479 
480  job.Fill(1.0);
481 
482  Evt* evt = in.next();
483 
484  if (!keep) {
485  for (vector<Trk>::iterator track = evt->mc_trks.begin(); track != evt->mc_trks.end(); ++track) {
486  track->pos += center;
487  }
488  }
489 
490  Evt event(*evt); // output
491 
492  event.mc_hits.clear();
493 
494  JHits_t mc_hits; // temporary buffer
495 
496  timer.reset();
497  timer.start();
498 
499  for (vector<Trk>::const_iterator track = evt->mc_trks.begin(); track != evt->mc_trks.end(); ++track) {
500 
501  if (!track->is_finalstate()) {
502  continue; // only final state particles produce light
503  }
504 
505  if (is_muon(*track)) {
506 
507  // -----------------------------------------------
508  // muon
509  // -----------------------------------------------
510 
511  job.Fill(2.0);
512 
513  typedef JDetectorSubset<JModuleComparator3Z_t> JDetectorSubset_t;
514 
515  const JCylinder3D::intersection_type intersection = cylinder.getIntersection(getAxis(*track));
516 
517  double Zmin = intersection.first;
518  double Zmax = intersection.second;
519 
520  if (Zmax - Zmin <= parameters.Dmin_m) {
521  continue;
522  }
523 
524  JVertex vertex(0.0, track->t, track->E); // start of muon
525 
526  if (track->pos.z < Zbed) { // propagate muon through rock
527 
528  if (track->dir.z > 0.0)
529  vertex.step(gRock, (Zbed - track->pos.z) / track->dir.z);
530  else
531  continue;
532  }
533 
534  if (vertex.getZ() < Zmin) { // propagate muon through water
535  vertex.step(gWater, Zmin - vertex.getZ());
536  }
537 
538  if (vertex.getRange() <= parameters.Dmin_m) {
539  continue;
540  }
541 
542  job.Fill(3.0);
543 
544  const JDetectorSubset_t subdetector(detector, getAxis(*track), maximal_road_width);
545 
546  if (subdetector.empty()) {
547  continue;
548  }
549 
550  job.Fill(4.0);
551 
552  JTrack muon(vertex); // propagate muon trough detector
553 
554  while (vertex.getE() >= parameters.Emin_GeV && vertex.getZ() < Zmax) {
555 
556  const int N = radiation.size();
557 
558  double li[N]; // inverse interaction lengths
559  double ls = 1.0e-5; // minimal total inverse interaction length [m^-1]
560 
561  for (int i = 0; i != N; ++i) {
562  ls += li[i] = radiation[i]->getInverseInteractionLength(vertex.getE());
563  }
564 
565  double As = 0.0; // ionization energy loss
566 
567  for (size_t i = 0; i != ionization.size(); ++i) {
568  As += ionization[i]->getA(vertex.getE());
569  }
570 
571  double step = gRandom->Exp(1.0) / ls; // distance to next radiation process
572  double range = vertex.getRange(As); // range of muon
573 
574  if (vertex.getE() < parameters.Emax_GeV) { // limited step size
575  if (parameters.Dmax_m < range) {
576  range = parameters.Dmax_m;
577  }
578  }
579 
580  double ts = getThetaMCS(vertex.getE(), min(step,range)); // multiple Coulomb scattering angle [rad]
581  double T2 = ts*ts; //
582 
583  rms.Fill(log10(vertex.getE()), (Double_t) 0, ts*ts);
584 
585  vertex.getDirection() += getRandomDirection(T2/3.0); // multiple Coulomb planar scattering
586 
587  vertex.step(As, min(step,range)); // ionization energy loss
588 
589  double Es = 0.0; // shower energy [GeV]
590 
591  if (step < range) {
592 
593  if (vertex.getE() >= parameters.Emin_GeV) {
594 
595  double y = gRandom->Uniform(ls);
596 
597  for (int i = 0; i != N; ++i) {
598 
599  y -= li[i];
600 
601  if (y < 0.0) {
602 
603  Es = radiation[i]->getEnergyOfShower(vertex.getE()); // shower energy [GeV]
604  ts = radiation[i]->getThetaRMS(vertex.getE(), Es); // scattering angle [rad]
605 
606  T2 += ts*ts;
607 
608  rms.Fill(log10(vertex.getE()), (Double_t) radiation[i]->getID(), ts*ts);
609  rad.Fill(log10(vertex.getE()), (Double_t) radiation[i]->getID(), Es);
610 
611  break;
612  }
613  }
614  }
615  }
616 
617  vertex.applyEloss(getRandomDirection(T2), Es);
618 
619  muon.push_back(vertex);
620  }
621 
622  // add muon end point
623 
624  if (vertex.getZ() < Zmax && vertex.getRange() > 0.0) {
625 
626  vertex.step(vertex.getRange());
627 
628  muon.push_back(vertex);
629  }
630 
631  // add information to output muon
632 
633  vector<Trk>::iterator trk = find_if(event.mc_trks.begin(),
634  event.mc_trks.end(),
635  make_predicate(&Trk::id, track->id));
636 
637  if (trk != event.mc_trks.end()) {
638  trk->len = (muon.rbegin()->getZ() < Zmax ? +1 : -1) * (muon.rbegin()->getZ() - muon.begin()->getZ());
639  trk->setusr(mc_usr_keys::energy_lost_in_can, muon.begin()->getE() - muon.rbegin()->getE());
640  }
641 
642  for (JDetector::const_iterator module = subdetector.begin(); module != subdetector.end(); ++module) {
643 
644  const double z0 = muon.begin()->getZ();
645  const double t0 = muon.begin()->getT();
646  const double Z = module->getZ() - module->getX() / getTanThetaC();
647 
648  if (Z >= muon.begin()->getZ() && Z <= muon.rbegin()->getZ()) {
649 
650  const JVector2D pos = muon.getPosition(Z);
651  const double R = hypot(module->getX() - pos.getX(),
652  module->getY() - pos.getY());
653 
654  for (size_t i = 0; i != CDF.size(); ++i) {
655 
656  if (R < CDF[i].integral.getXmax()) {
657 
658  try {
659 
660  double W = 1.0; // mip
661 
662  if (is_deltarays(CDF[i].type)) {
663  W = getDeltaRaysFromMuon(muon.getE(Z)); // delta-rays
664  }
665 
666  const double NPE = CDF[i].integral.getNPE(R) * module->size() * factor * W;
667  const int N = gRandom->Poisson(NPE);
668 
669  if (N != 0) {
670 
671  double ns = 0.0;
672 
673  for (JModule::const_iterator pmt = module->begin(); pmt != module->end(); ++pmt) {
674 
675  const double R = hypot(pmt->getX() - pos.getX(),
676  pmt->getY() - pos.getY());
677  const double Z = pmt->getZ() - z0;
678  const double theta = python.constrain(pmt->getTheta());
679  const double phi = python.constrain(fabs(pmt->getPhi()));
680 
681  const double npe = CDF[i].function.getNPE(R, theta, phi) * factor * W;
682 
683  ns += npe;
684 
685  int n0 = min(getNumberOfPhotoElectrons(NPE, N, npe), parameters.Nmax_npe);
686 
687  job.Fill((double) (100 + CDF[i].type), (double) n0);
688 
689  while (n0 != 0) {
690 
691  const double t1 = CDF[i].function.getTime(R, theta, phi, gRandom->Rndm());
692  const int n1 = getNumberOfPhotoElectrons(n0);
693 
694  mc_hits.push_back(JHit_t(mc_hits.size() + 1,
695  pmt->getID(),
696  getHitType(CDF[i].type),
697  track->id,
698  t0 + (R * getTanThetaC() + Z) / C + t1,
699  n1));
700 
701  n0 -= n1;
702  }
703  }
704 
705  if (ns > NPE) {
706  job.Fill((double) (300 + CDF[i].type));
707  }
708  }
709  }
710  catch(const exception& error) {
711  job.Fill((double) (200 + CDF[i].type));
712  }
713  }
714  }
715  }
716  }
717 
718  for (JTrack::const_iterator vertex = muon.begin(); vertex != muon.end(); ++vertex) {
719 
720  const double Es = vertex->getEs();
721 
722  if (Es >= parameters.Ecut_GeV) {
723 
724  const double z0 = vertex->getZ();
725  const double t0 = vertex->getT();
726  const double DZ = geanz.getMaximum(Es);
727 
728  int origin = track->id;
729 
730  if (writeEMShowers) {
731  origin = event.mc_trks.size() + 1;
732  }
733 
734  int number_of_hits = 0;
735 
736  JDetectorSubset_t::range_type range = subdetector.getRange(z0 - maximal_distance,
737  z0 + maximal_distance);
738 
739  for (JDetector::const_iterator module = range.begin(); module != range.end(); ++module) {
740 
741  const double R = hypot(module->getX() - vertex->getX(),
742  module->getY() - vertex->getY());
743  const double Z = module->getZ() - z0 - DZ;
744  const double D = sqrt(R*R + Z*Z);
745  const double cd = Z / D;
746 
747  for (size_t i = 0; i != CDG.size(); ++i) {
748 
749  if (D < CDG[i].integral.getXmax()) {
750 
751  try {
752 
753  const double NPE = CDG[i].integral.getNPE(D, cd) * Es * module->size() * factor;
754  const int N = gRandom->Poisson(NPE);
755 
756  if (N != 0) {
757 
758  double ns = 0.0;
759 
760  for (JModule::const_iterator pmt = module->begin(); pmt != module->end(); ++pmt) {
761 
762  const double R = hypot(pmt->getX() - vertex->getX(),
763  pmt->getY() - vertex->getY());
764  const double Z = pmt->getZ() - z0 - DZ;
765  const double D = sqrt(R*R + Z*Z);
766  const double cd = Z / D;
767  const double theta = python.constrain(pmt->getTheta());
768  const double phi = python.constrain(fabs(pmt->getPhi()));
769 
770  const double npe = CDG[i].function.getNPE(D, cd, theta, phi) * Es * factor;
771 
772  ns += npe;
773 
774  int n0 = min(getNumberOfPhotoElectrons(NPE, N, npe), parameters.Nmax_npe);
775 
776  job.Fill((double) (100 + CDG[i].type), (double) n0);
777 
778  while (n0 != 0) {
779 
780  const double dz = geanz.getLength(Es, gRandom->Rndm());
781  const double Z = pmt->getZ() - z0 - dz;
782  const double D = sqrt(R*R + Z*Z);
783  const double cd = Z / D;
784 
785  const double t1 = CDG[i].function.getTime(D, cd, theta, phi, gRandom->Rndm());
786  const int n1 = getNumberOfPhotoElectrons(n0);
787 
788  mc_hits.push_back(JHit_t(mc_hits.size() + 1,
789  pmt->getID(),
790  getHitType(CDG[i].type),
791  origin,
792  t0 + (dz + D * getIndexOfRefraction()) / C + t1,
793  n1));
794 
795  n0 -= n1;
796 
797  number_of_hits += n1;
798  }
799  }
800 
801  if (ns > NPE) {
802  job.Fill((double) (300 + CDG[i].type));
803  }
804  }
805  }
806  catch(const exception& error) {
807  job.Fill((double) (200 + CDG[i].type));
808  }
809  }
810  }
811  }
812 
813  if (writeEMShowers && number_of_hits != 0) {
814 
815  event.mc_trks.push_back(JTrk_t(origin,
816  TRACK_TYPE_PHOTON,
817  track->id,
818  track->pos + track->dir * vertex->getZ(),
819  track->dir,
820  vertex->getT(),
821  Es));
822  }
823  }
824  }
825 
826  } else if (track->len > 0.0) {
827 
828  // -----------------------------------------------
829  // decayed particles treated as mip (tau includes mip+deltaray)
830  // -----------------------------------------------
831 
832  job.Fill(6.0);
833 
834  const double z0 = 0.0;
835  const double z1 = z0 + track->len;
836  const double t0 = track->t;
837  const double E = track->E;
838 
839  const JTransformation3D transformation = getTransformation(*track);
840 
841  JModule buffer;
842 
843  for (JDetector::const_iterator module = detector.begin(); module != detector.end(); ++module) {
844 
845  const JPosition3D pos = transformation.transform(module->getPosition());
846 
847  const double R = pos.getX();
848  const double Z = pos.getZ() - R / getTanThetaC();
849 
850  if (Z < z0 ||
851  Z > z1 ||
852  R > maximal_road_width) {
853  continue;
854  }
855 
856  for (size_t i = 0; i != CDF.size(); ++i) {
857 
858  double W = 1.0; // mip
859 
860  if (is_deltarays(CDF[i].type)) {
861 
862  if (is_tau(*track))
863  W = getDeltaRaysFromTau(E); // delta-rays
864  else
865  continue;
866  }
867 
868  if (R < CDF[i].integral.getXmax()) {
869 
870  try {
871 
872  const double NPE = CDF[i].integral.getNPE(R) * module->size() * factor * W;
873  const int N = gRandom->Poisson(NPE);
874 
875  if (N != 0) {
876 
877  buffer = *module;
878 
879  buffer.transform(transformation);
880 
881  double ns = 0.0;
882 
883  for (JModule::const_iterator pmt = buffer.begin(); pmt != buffer.end(); ++pmt) {
884 
885  const double R = pmt->getX();
886  const double Z = pmt->getZ() - z0;
887  const double theta = python.constrain(pmt->getTheta());
888  const double phi = python.constrain(fabs(pmt->getPhi()));
889 
890  const double npe = CDF[i].function.getNPE(R, theta, phi) * factor * W;
891 
892  ns += npe;
893 
894  int n0 = min(getNumberOfPhotoElectrons(NPE, N, npe), parameters.Nmax_npe);
895 
896  job.Fill((double) (120 + CDF[i].type), (double) n0);
897 
898  while (n0 != 0) {
899 
900  const double t1 = CDF[i].function.getTime(R, theta, phi, gRandom->Rndm());
901  const int n1 = getNumberOfPhotoElectrons(n0);
902 
903  mc_hits.push_back(JHit_t(mc_hits.size() + 1,
904  pmt->getID(),
905  getHitType(CDF[i].type),
906  track->id,
907  t0 + (R * getTanThetaC() + Z) / C + t1,
908  n1));
909 
910  n0 -= n1;
911  }
912  }
913 
914  if (ns > NPE) {
915  job.Fill((double) (320 + CDF[i].type));
916  }
917  }
918  }
919  catch(const exception& error) {
920  job.Fill((double) (220 + CDF[i].type));
921  }
922 
923  }
924  }
925  }
926 
927  if (!buffer.empty()) {
928  job.Fill(7.0);
929  }
930 
931  } else if (!is_neutrino(*track)) {
932 
933  if (JPDB::getInstance().hasPDG(track->type)) {
934 
935  // -----------------------------------------------
936  // electron or hadron
937  // -----------------------------------------------
938 
939  job.Fill(8.0);
940 
941  double E = track->E;
942 
943  try {
944  E = getKineticEnergy(E, JPDB::getInstance().getPDG(track->type).mass);
945  }
946  catch(const exception& error) {
947  ERROR(error.what() << endl);
948  }
949 
950  E = pythia(track->type, E);
951 
952  if (E >= parameters.Ecut_GeV && cylinder.getDistance(getPosition(*track)) < parameters.Dmin_m) {
953 
954  const double z0 = 0.0;
955  const double t0 = track->t;
956  const double DZ = geanz.getMaximum(E);
957 
958  const JTransformation3D transformation = getTransformation(*track);
959 
960  JModule buffer;
961 
962  for (JDetector::const_iterator module = detector.begin(); module != detector.end(); ++module) {
963 
964  const JPosition3D pos = transformation.transform(module->getPosition());
965 
966  const double R = pos.getX();
967  const double Z = pos.getZ() - z0 - DZ;
968  const double D = sqrt(R*R + Z*Z);
969  const double cd = Z / D;
970 
971  for (size_t i = 0; i != CDG.size(); ++i) {
972 
973  if (D < CDG[i].integral.getXmax()) {
974 
975  try {
976 
977  const double NPE = CDG[i].integral.getNPE(D, cd) * E * module->size() * factor;
978  const int N = gRandom->Poisson(NPE);
979 
980  if (N != 0) {
981 
982  buffer = *module;
983 
984  buffer.transform(transformation);
985 
986  double ns = 0.0;
987 
988  for (JModule::const_iterator pmt = buffer.begin(); pmt != buffer.end(); ++pmt) {
989 
990  const double R = pmt->getX();
991  const double Z = pmt->getZ() - z0 - DZ;
992  const double D = sqrt(R*R + Z*Z);
993  const double cd = Z / D;
994  const double theta = python.constrain(pmt->getTheta());
995  const double phi = python.constrain(fabs(pmt->getPhi()));
996 
997  const double npe = CDG[i].function.getNPE(D, cd, theta, phi) * E * factor;
998 
999  ns += npe;
1000 
1001  int n0 = min(getNumberOfPhotoElectrons(NPE, N, npe), parameters.Nmax_npe);
1002 
1003  job.Fill((double) (140 + CDG[i].type), (double) n0);
1004 
1005  while (n0 != 0) {
1006 
1007  const double dz = geanz.getLength(E, gRandom->Rndm());
1008  const double Z = pmt->getZ() - z0 - dz;
1009  const double D = sqrt(R*R + Z*Z);
1010  const double cd = Z / D;
1011 
1012  const double t1 = CDG[i].function.getTime(D, cd, theta, phi, gRandom->Rndm());
1013  const int n1 = getNumberOfPhotoElectrons(n0);
1014 
1015  mc_hits.push_back(JHit_t(mc_hits.size() + 1,
1016  pmt->getID(),
1017  getHitType(CDG[i].type, true),
1018  track->id,
1019  t0 + (dz + D * getIndexOfRefraction()) / C + t1,
1020  n1));
1021 
1022  n0 -= n1;
1023  }
1024  }
1025 
1026  if (ns > NPE) {
1027  job.Fill((double) (340 + CDG[i].type));
1028  }
1029  }
1030  }
1031  catch(const exception& error) {
1032  job.Fill((double) (240 + CDG[i].type));
1033  }
1034  }
1035  }
1036  }
1037 
1038  if (!buffer.empty()) {
1039  job.Fill(9.0);
1040  }
1041 
1042  } else {
1043  job.Fill(21.0);
1044  }
1045  }
1046  }
1047  }
1048 
1049  if (!mc_hits.empty()) {
1050 
1051  mc_hits.merge(parameters.Tmax_ns);
1052 
1053  event.mc_hits.resize(mc_hits.size());
1054 
1055  copy(mc_hits.begin(), mc_hits.end(), event.mc_hits.begin());
1056  }
1057 
1058  timer.stop();
1059 
1060  if (has_neutrino(event)) {
1061  cpu.Fill(log10(get_neutrino(event).E), (double) timer.usec_ucpu * 1.0e-3);
1062  }
1063 
1064  if (event.mc_hits.size() >= numberOfHits) {
1065 
1066  outputFile.put(event);
1067 
1068  job.Fill(10.0);
1069  }
1070  }
1071  STATUS(endl);
1072 
1073  outputFile.put(job);
1074  outputFile.put(cpu);
1075  outputFile.put(rms);
1076  outputFile.put(rad);
1077  outputFile.put(*gRandom);
1078 
1079  outputFile.close();
1080 }
mc_usr_keys::energy_lost_in_can
const char *const energy_lost_in_can
Definition: io_ascii.hh:46
JSUPPORT::JMeta
Auxiliary class for ROOT I/O of application specific meta data.
Definition: JMeta.hh:70
JAANET::can::zmin
double zmin
Bottom [m].
Definition: JHead.hh:585
JGEOMETRY2D::JVector2D
Data structure for vector in two dimensions.
Definition: JVector2D.hh:32
JSUPPORT::JFileRecorder
Object writing to file.
Definition: JFileRecorder.hh:41
JPARSER::JParser
Utility class to parse command line options.
Definition: JParser.hh:1500
JPHYSICS::JCDFTable2D
Custom class for CDF table in 2 dimensions.
Definition: JCDFTable2D.hh:40
JLANG::JException
General exception.
Definition: JException.hh:23
JPHYSICS::JCDFTable
Multi-dimensional CDF table for arrival time of Cherenkov light.
Definition: JCDFTable.hh:53
JLANG::make_predicate
JPredicate< JResult_t T::*, JComparison::eq > make_predicate(JResult_t T::*member, const JResult_t value)
Helper method to create predicate for data member.
Definition: JPredicate.hh:128
main
int main(int argc, char *argv[])
Definition: Main.cc:15
JSupport.hh
ROOT TTree parameter settings of various packages.
JPHYSICS::EErad_t
static const JRadiationSource_t EErad_t
Definition: JRadiation.hh:510
JGEOMETRY3D::JTime::getT
double getT() const
Get time.
Definition: JGeometry3D/JTime.hh:122
JSIRENE::JPoint::getE
double getE() const
Get muon energy.
Definition: JSireneToolkit.hh:193
JSIRENE::JVertex::step
JVertex & step(const double ds)
Step using default ionisation energy loss.
Definition: JSireneToolkit.hh:397
JPDFToolkit.hh
Auxiliary methods for PDF calculations.
JDETECTOR::JModule
Data structure for a composite optical module.
Definition: JModule.hh:68
E
then usage E
Definition: JMuonPostfit.sh:35
JSIRENE::JHits_t::merge
void merge(const double Tmax_ns)
Merge hits on same PMT that are within given time window.
Definition: JSirene.hh:146
DZ
then let DZ
Definition: module-Z:fit.sh:71
JSIRENE::JTrk_t
Auxiliary class to set-up Trk.
Definition: JSirene.hh:186
Vec::z
double z
Definition: Vec.hh:14
JAANET::getTransformation
JTransformation3D getTransformation(const Trk &track)
Get transformation.
Definition: JAAnetToolkit.hh:282
JGEOMETRY2D::JCircle2D
Data structure for circle in two dimensions.
Definition: JCircle2D.hh:33
gmake_property
#define gmake_property(A)
macro to convert (template) parameter to JPropertiesElement object
Definition: JProperties.hh:1291
safetyFactor
double safetyFactor
safety factor for average CDF integral of optical module
Definition: JSirene.cc:69
JAANET::simul
Generator for simulation.
Definition: JHead.hh:513
JPHYSICS::getIndexOfRefraction
double getIndexOfRefraction()
Get average index of refraction of water corresponding to group velocity.
Definition: JPhysics/JConstants.hh:128
JGeane.hh
Energy loss of muon.
STATUS
#define STATUS(A)
Definition: JMessage.hh:63
JPHYSICS::SCATTERED_LIGHT_FROM_EMSHOWER
scattered light from EM shower
Definition: JPDFTypes.hh:38
JAANET::has_neutrino
bool has_neutrino(const Evt &evt)
Test whether given event has an incoming neutrino.
Definition: JAAnetToolkit.hh:435
JDETECTOR::JDetector
Detector data structure.
Definition: JDetector.hh:89
pythia.hh
This file contains converted Fortran code from km3.
JAANET::is_muon
bool is_muon(const Trk &track)
Test whether given track is a (anti-)muon.
Definition: JAAnetToolkit.hh:338
JPHYSICS::JACoeffSource
Implementation for calculation of ionization constant.
Definition: JACoeffSource.hh:48
JFileRecorder.hh
Recording of objects on file according a format that follows from the file name extension.
JSIRENE::getHitType
JHitType_t getHitType(const JPDFType_t pdf, const bool shower=false)
Get hit type corresponding to given PDF type.
Definition: JSireneToolkit.hh:122
JCALIBRATE::JParameters
Auxiliary class for PMT parameters including threshold.
Definition: JParameters.hh:21
JPHYSICS::getDeltaRaysFromTau
double getDeltaRaysFromTau(const double E)
Equivalent EM-shower energy due to delta-rays per unit tau track length.
Definition: JPDFToolkit.hh:95
JEEP::JProperties
Utility class to parse parameter values.
Definition: JProperties.hh:496
JSIRENE::JSeaWater::O
static double O()
Estimated mass fractions of chemical elements in sea water.
Definition: JSeaWater.hh:25
N
then JShowerPostfit f $INPUT_FILE o $OUTPUT_FILE N
Definition: JShowerPostfit.sh:95
parameters
*fatal Wrong number of arguments esac JCookie sh typeset Z DETECTOR typeset Z SOURCE_RUN typeset Z TARGET_RUN set_variable PARAMETERS_FILE $WORKDIR parameters
Definition: diff-Tuna.sh:38
Jpp.hh
Jpp environment information.
JPARSER::initialised
Empty structure for specification of parser element that is initialised (i.e. does not require input)...
Definition: JParser.hh:66
JPHYSICS::gRock
static const JGeane_t gRock(2.67e-1 *0.9 *DENSITY_ROCK, 3.40e-4 *1.2 *DENSITY_ROCK)
Function object for energy loss of muon in rock.
JPHYSICS::gWater
static const JGeaneWater gWater
Function object for energy loss of muon in sea water.
Definition: JGeane.hh:381
JSUPPORT::JLimit::max
static counter_type max()
Get maximum counter value.
Definition: JLimit.hh:117
JPHYSICS::DENSITY_SEA_WATER
static const double DENSITY_SEA_WATER
Fixed environment values.
Definition: JPhysics/JConstants.hh:38
JRadiation.hh
Muon radiative cross sections.
JAANET::JHead::simul
std::vector< JAANET::simul > simul
Definition: JHead.hh:1503
JSIRENE::pythia
static const JPythia pythia
Function object for relative light yield as a function of GEANT particle code.
Definition: JPythia.hh:96
JAANET::getTime
double getTime(const Hit &hit)
Get true time of hit.
Definition: JAAnetToolkit.hh:92
outputFile
string outputFile
Definition: JDAQTimesliceSelector.cc:37
JGEOMETRY2D::JVector2D::getY
double getY() const
Get y position.
Definition: JVector2D.hh:74
JDetector.hh
Data structure for detector geometry and calibration.
APPLICATION_JSIRENE
static const char *const APPLICATION_JSIRENE
detector simulation
Definition: applications.hh:19
JProperties.hh
Utility class to parse parameter values.
JPHYSICS::DIRECT_LIGHT_FROM_MUON
direct light from muon
Definition: JPDFTypes.hh:26
JAANET::coord_origin
Coordinate origin.
Definition: JHead.hh:717
JPHYSICS::JRadiationFunction
Fast implementation of class JRadiation.
Definition: JRadiationFunction.hh:32
JPHYSICS::JRadiationSource
Implementation for calculation of inverse interaction length and shower energy.
Definition: JRadiationSource.hh:89
JFunctionalMap_t.hh
Various implementations of functional maps.
JSIRENE::JHits_t
Auxiliary data structure for list of hits with hit merging capability.
Definition: JSirene.hh:135
JAANET::JPDB::getInstance
static const JPDB & getInstance()
Get particle data book.
Definition: JPDB.hh:125
JSIRENE::JSeaWater::H
static double H()
Definition: JSeaWater.hh:26
JPDFTypes.hh
Numbering scheme for PDF types.
JDate.hh
Date and time functions.
JAANET::is_neutrino
bool is_neutrino(const Trk &track)
Test whether given track is a neutrino.
Definition: JAAnetToolkit.hh:320
JPHYSICS::C
static const double C
Physics constants.
Definition: JPhysics/JConstants.hh:25
JDetectorSubset.hh
Auxiliary class to extract a subset of optical modules from a detector.
JPHYSICS::SCATTERED_LIGHT_FROM_MUON
scattered light from muon
Definition: JPDFTypes.hh:27
JSUPPORT::JLimit
Auxiliary class for defining the range of iterations of objects.
Definition: JLimit.hh:41
JTOOLS::JPolint1FunctionalGridMap
Type definition of a 1st degree polynomial interpolation based on a JGridMap implementation.
Definition: JFunctionalMap_t.hh:91
JFunction1D_t.hh
JPHYSICS::getThetaMCS
double getThetaMCS(const double E, const double x, const double X0, const double M, const double Q)
Get multiple Coulomb scattering angle.
Definition: JPhysicsSupportkit.hh:40
JAANET::JHead::can
JAANET::can can
Definition: JHead.hh:1509
JPHYSICS::JDISSource
Implementation for calculation of inverse interaction length and shower energy due to deep-inelastic ...
Definition: JRadiationSource.hh:160
Vec
The Vec class is a straightforward 3-d vector, which also works in pyroot.
Definition: Vec.hh:12
JAANET::JHead::push
void push(T JHead::*pd)
Push given data member to Head.
Definition: JHead.hh:1306
JPrint.hh
I/O formatting auxiliaries.
JGEOMETRY3D::JCylinder3D
Cylinder object.
Definition: JCylinder3D.hh:39
JAANET::detector
Detector file.
Definition: JHead.hh:226
JEEP::getGITVersion
std::string getGITVersion(const std::string &tag)
Get GIT version for given GIT tag.
Definition: Jeep/JGITTags.hh:34
JAANET::getKineticEnergy
double getKineticEnergy(const double E, const double m)
Get kinetic energy of particle with given mass.
Definition: JAAnetToolkit.hh:660
JPHYSICS::JRadiation
Auxiliary class for the calculation of the muon radiative cross sections.
Definition: JRadiation.hh:34
make_field
#define make_field(A,...)
macro to convert parameter to JParserTemplateElement object
Definition: JParser.hh:1961
log10
set_variable E_E log10(E_{fit}/E_{#mu})"
JTOOLS::JPolint1FunctionalMap
Type definition of a 1st degree polynomial interpolation based on a JMap implementation.
Definition: JFunctionalMap_t.hh:55
JPHYSICS::geanz
static const JGeanz geanz(1.85, 0.62, 0.54)
Function object for longitudinal EM-shower profile.
JGEOMETRY2D::JVector2D::getX
double getX() const
Get x position.
Definition: JVector2D.hh:63
JAANET::getAxis
JAxis3D getAxis(const Trk &track)
Get axis.
Definition: JAAnetToolkit.hh:246
JSIRENE::JTrack::getE
double getE(const double z) const
Get muon energy at given position along trajectory.
Definition: JSireneToolkit.hh:237
JEEP::JTimer
Auxiliary class for CPU timing and usage.
Definition: JTimer.hh:32
JMeta.hh
ROOT I/O of application specific meta data.
JAANET::getPosition
JPosition3D getPosition(const Vec &pos)
Get position.
Definition: JAAnetToolkit.hh:174
JPHYSICS::SCATTERED_LIGHT_FROM_DELTARAYS
scattered light from delta-rays
Definition: JPDFTypes.hh:33
JAAnetToolkit.hh
Definition of hit and track types and auxiliary methods for handling Monte Carlo data.
NOTICE
#define NOTICE(A)
Definition: JMessage.hh:64
ERROR
#define ERROR(A)
Definition: JMessage.hh:66
JPHYSICS::DIRECT_LIGHT_FROM_EMSHOWER
direct light from EM shower
Definition: JPDFTypes.hh:37
JMATH::PI
static const double PI
Mathematical constants.
Definition: JMath/JConstants.hh:20
JTOOLS::JRange::constrain
T constrain(argument_type x) const
Constrain value to range.
Definition: JRange.hh:350
JSIRENE::JTrack
Muon trajectory.
Definition: JSireneToolkit.hh:218
JGEOMETRY3D::JCylinder3D::addMargin
void addMargin(const double D)
Add (safety) margin.
Definition: JCylinder3D.hh:173
JGEOMETRY3D::JVector3D::getY
double getY() const
Get y position.
Definition: JVector3D.hh:104
debug
int debug
debug level
Definition: JSirene.cc:67
JPHYSICS::Brems_t
static const JRadiationSource_t Brems_t
Definition: JRadiation.hh:511
JPHYSICS::JPDFType_t
JPDFType_t
PDF types.
Definition: JPDFTypes.hh:24
JSYSTEM::getDate
const char * getDate(const JDateAndTimeFormat option=ISO8601)
Get ASCII formatted date.
Definition: JSystem/JDate.hh:35
JTOOLS::JMAPLIST
Auxiliary class for recursive map list generation.
Definition: JMapList.hh:108
R
then usage $script[distance] fi case set_variable R
Definition: JDrawLED.sh:43
JMessage.hh
General purpose messaging.
JSIRENE::JPoint::getEs
double getEs() const
Get shower energy.
Definition: JSireneToolkit.hh:204
JDETECTOR::JDetectorSubset
Detector subset with binary search functionality.
Definition: JDetectorSubset.hh:119
JDETECTOR::JDetectorSubset_t
Detector subset without binary search functionality.
Definition: JDetectorSubset.hh:38
JAANET::JHead
Monte Carlo run header.
Definition: JHead.hh:1167
JSIRENE::JVertex
Vertex of energy loss of muon.
Definition: JSireneToolkit.hh:305
JGEOMETRY3D::JVersor3Z::getDirection
const JVersor3Z & getDirection() const
Get direction.
Definition: JVersor3Z.hh:81
Head
The Head class reflects the header of Monte-Carlo event files, which consists of keys (also referred ...
Definition: Head.hh:65
JSIRENE::JSeaWater::Cl
static double Cl()
Definition: JSeaWater.hh:28
FATAL
#define FATAL(A)
Definition: JMessage.hh:67
JMultipleFileScanner.hh
Scanning of objects from multiple files according a format that follows from the extension of each fi...
Trk::id
int id
track identifier
Definition: Trk.hh:16
JPHYSICS::JCDFTable1D
Custom class for CDF table in 1 dimension.
Definition: JCDFTable1D.hh:39
JPHYSICS::DIRECT_LIGHT_FROM_DELTARAYS
direct light from delta-rays
Definition: JPDFTypes.hh:32
range
z range($ZMAX-$ZMIN)< $MINIMAL_DZ." fi fi typeset -Z 4 STRING typeset -Z 2 FLOOR JPlot1D -f $
Definition: module-Z:fit.sh:118
JSIRENE::JVertex::applyEloss
void applyEloss(const JVersor3Z &Ts, const double Es)
Apply shower energy loss.
Definition: JSireneToolkit.hh:381
JLANG::JException::what
virtual const char * what() const override
Get error message.
Definition: JException.hh:48
JAANET::JHead::detector
std::vector< JAANET::detector > detector
Definition: JHead.hh:1499
JSIRENE::getNumberOfPhotoElectrons
int getNumberOfPhotoElectrons(const double NPE, const int N, const double npe)
Get number of photo-electrons of a hit given the expectation values of the number of photo-electrons ...
Definition: JSireneToolkit.hh:64
JDETECTOR::load
void load(const std::string &file_name, JDetector &detector)
Load detector from input file.
Definition: JDetectorToolkit.hh:478
JPHYSICS::JGeanz::getMaximum
double getMaximum(const double E) const
Get depth of shower maximum.
Definition: JGeanz.hh:162
JSUPPORT::JMultipleFileScanner
General purpose class for object reading from a list of file names.
Definition: JMultipleFileScanner.hh:199
JSIRENE::JTrack::getPosition
JVector2D getPosition(const double z) const
Get muon position at given position along trajectory.
Definition: JSireneToolkit.hh:261
JParser.hh
Utility class to parse command line options.
Evt::mc_hits
std::vector< Hit > mc_hits
MC: list of MC truth hits.
Definition: Evt.hh:48
JPHYSICS::is_scattered
bool is_scattered(const int pdf)
Test if given PDF type corresponds to scattered light.
Definition: JPDFTypes.hh:165
JDETECTOR::JModule::transform
void transform(const JRotation3D &R, const JVector3D &pos)
Transformation of geometry (see method JGEOMETRY3D::JPosition3D::transform(const JRotation3D&amp;, const JVector3D&amp;)).
Definition: JModule.hh:346
JPHYSICS::is_deltarays
bool is_deltarays(const int pdf)
Test if given PDF type corresponds to Cherenkov light from delta-rays.
Definition: JPDFTypes.hh:151
JSIRENE::JHit_t
Auxiliary class to set-up Hit.
Definition: JSirene.hh:55
JGEOMETRY3D::JVector3D::getX
double getX() const
Get x position.
Definition: JVector3D.hh:94
JPHYSICS::getDeltaRaysFromMuon
double getDeltaRaysFromMuon(const double E)
Equivalent EM-shower energy due to delta-rays per unit muon track length.
Definition: JPDFToolkit.hh:67
JAANET::copy
void copy(const Head &from, JHead &to)
Copy header from from to to.
Definition: JHead.cc:139
JSYSTEM::ls
Auxiliary data structure to list files in directory.
Definition: JSystemToolkit.hh:302
JEEP::getFilename
std::string getFilename(const std::string &file_name)
Get file name part, i.e. part after last JEEP::PATHNAME_SEPARATOR if any.
Definition: JeepToolkit.hh:128
JPHYSICS::getTanThetaC
double getTanThetaC()
Get average tangent of Cherenkov angle of water corresponding to group velocity.
Definition: JPhysics/JConstants.hh:150
Z
do set_variable MODULE getModule a $WORKDIR detector_a datx L $STRING JEditDetector a $WORKDIR detector_a datx M $MODULE setz o $WORKDIR detector_a datx JEditDetector a $WORKDIR detector_b datx M $MODULE setz o $WORKDIR detector_b datx done echo Output stored at $WORKDIR detector_a datx and $WORKDIR tripod_a txt JDrawDetector2D a $WORKDIR detector_a datx a $WORKDIR detector_b datx L BL o detector $FORMAT $BATCH JDrawDetector2D T $WORKDIR tripod_a txt T $WORKDIR tripod_b txt L BL o tripod $FORMAT $BATCH JCompareDetector a $WORKDIR detector_a datx b $WORKDIR detector_b datx o $WORKDIR abc root &dev null for KEY in X Y Z
Definition: JAlignDetector.sh:81
JSIRENE::JSeaWater::Na
static double Na()
Definition: JSeaWater.hh:27
JGEOMETRY3D::JPosition3D
Data structure for position in three dimensions.
Definition: JPosition3D.hh:36
JSUPPORT::JLimit::getLimit
const JLimit & getLimit() const
Get limit.
Definition: JLimit.hh:73
JGeanz.hh
Longitudinal emission profile EM-shower.
JPHYSICS::JGeanz::getLength
double getLength(const double E, const double P, const double eps=1.0e-3) const
Get shower length for a given integrated probability.
Definition: JGeanz.hh:122
JAANET::get_neutrino
const Trk & get_neutrino(const Evt &evt)
Get incoming neutrino.
Definition: JAAnetToolkit.hh:446
detector
do set_variable DETECTOR_TXT $WORKDIR detector
Definition: detector-XY:fit1d.sh:38
JAANET::is_tau
bool is_tau(const Trk &track)
Test whether given track is a (anti-)tau.
Definition: JAAnetToolkit.hh:346
JPHYSICS::GNrad_t
static const JRadiationSource_t GNrad_t
Definition: JRadiation.hh:512
JSIRENE::JVertex::getRange
double getRange() const
Get visible range of muon using default ionisation energy loss.
Definition: JSireneToolkit.hh:339
JAANET::JHead::coord_origin
JAANET::coord_origin coord_origin
Definition: JHead.hh:1512
JGEOMETRY3D::JVersor3Z
Data structure for normalised vector in positive z-direction.
Definition: JVersor3Z.hh:39
in
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY JAcoustics sh $DETECTOR_ID source JAcousticsToolkit sh CHECK_EXIT_CODE typeset A EMITTERS get_tripods $WORKDIR tripod txt EMITTERS get_transmitters $WORKDIR transmitter txt EMITTERS for EMITTER in
Definition: JCanberra.sh:46
JGEOMETRY3D::JTransformation3D::transform
JPosition3D transform(const JPosition3D &pos) const
Transform position.
Definition: JTransformation3D.hh:49
D
do echo Generating $dir eval D
Definition: JDrawLED.sh:53
Head::coord_origin
Vec coord_origin() const
Get coordinate origin.
Definition: Head.hh:395
numberOfBins
int numberOfBins
number of bins for average CDF integral of optical module
Definition: JSirene.cc:68
JGEOMETRY3D::JVector3D::getZ
double getZ() const
Get z position.
Definition: JVector3D.hh:115
Evt::mc_trks
std::vector< Trk > mc_trks
MC: list of MC truth tracks.
Definition: Evt.hh:49
GAUSS_LEGENDRE::epsilon
const double epsilon
Definition: JQuadrature.cc:21
JTOOLS::JHermiteSplineFunction1D_t
Type definition of a spline interpolation method based on a JCollection with double result type...
Definition: JFunction1D_t.hh:92
Evt
The Evt class respresent a Monte Carlo (MC) event as well as an offline event.
Definition: Evt.hh:20
DEBUG
#define DEBUG(A)
Message macros.
Definition: JMessage.hh:62
JAANET::can::zmax
double zmax
Top [m].
Definition: JHead.hh:586
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