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JMuonPath.cc File Reference

Program to perform JFIT::JRegressor<JLine3Z,JGandalf> fit with I/O of JFIT::JEvt data. More...

#include <string>
#include <iostream>
#include <iomanip>
#include <vector>
#include <algorithm>
#include "km3net-dataformat/offline/Head.hh"
#include "km3net-dataformat/offline/MultiHead.hh"
#include "km3net-dataformat/offline/Evt.hh"
#include "km3net-dataformat/definitions/fitparameters.hh"
#include "JDAQ/JDAQEventIO.hh"
#include "JDAQ/JDAQTimesliceIO.hh"
#include "JDAQ/JDAQSummarysliceIO.hh"
#include "JDetector/JDetector.hh"
#include "JDetector/JDetectorToolkit.hh"
#include "JDetector/JModuleRouter.hh"
#include "JTrigger/JHit.hh"
#include "JTrigger/JFrame.hh"
#include "JTrigger/JTimeslice.hh"
#include "JTrigger/JHitL0.hh"
#include "JTrigger/JBuildL0.hh"
#include "JTrigger/JTriggerParameters.hh"
#include "JSupport/JSingleFileScanner.hh"
#include "JSupport/JParallelFileScanner.hh"
#include "JSupport/JFileRecorder.hh"
#include "JSupport/JSupport.hh"
#include "JSupport/JMeta.hh"
#include "JFit/JPMTW0.hh"
#include "JFit/JLine3Z.hh"
#include "JFit/JGandalf.hh"
#include "JFit/JLine3ZRegressor.hh"
#include "JFit/JFitToolkit.hh"
#include "JFit/JModel.hh"
#include "JReconstruction/JHitW0.hh"
#include "JReconstruction/JEvt.hh"
#include "JReconstruction/JEvtToolkit.hh"
#include "JPhysics/JConstants.hh"
#include "JTools/JFunction1D_t.hh"
#include "JTools/JFunctionalMap_t.hh"
#include "JPhysics/JPDFTable.hh"
#include "JPhysics/JPDFToolkit.hh"
#include "Jeep/JParser.hh"
#include "Jeep/JMessage.hh"

Go to the source code of this file.

Functions

int main (int argc, char **argv)
 

Detailed Description

Program to perform JFIT::JRegressor<JLine3Z,JGandalf> fit with I/O of JFIT::JEvt data.

Author
mdejong

Definition in file JMuonPath.cc.

Function Documentation

int main ( int  argc,
char **  argv 
)

< hit selection [m]

< hit selection [ns]

Definition at line 62 of file JMuonPath.cc.

63 {
64  using namespace std;
65  using namespace JPP;
66  using namespace KM3NETDAQ;
67 
68  typedef JParallelFileScanner< JTypeList<JDAQEvent, JEvt> > JParallelFileScanner_t;
69  typedef JParallelFileScanner_t::multi_pointer_type multi_pointer_type;
71 
72  JParallelFileScanner_t inputFile;
74  JLimit_t& numberOfEvents = inputFile.getLimit();
75  string detectorFile;
76  string pdfFile;
77  double roadWidth_m;
78  double R_Hz;
79  size_t numberOfPrefits;
80  double TTS_ns;
81  double E_GeV;
82  int debug;
83 
84  try {
85 
86  JParser<> zap("Program to perform fit of muon path to data.");
87 
88  zap['f'] = make_field(inputFile);
89  zap['o'] = make_field(outputFile) = "path.root";
90  zap['a'] = make_field(detectorFile);
91  zap['n'] = make_field(numberOfEvents) = JLimit::max();
92  zap['P'] = make_field(pdfFile);
93  zap['R'] = make_field(roadWidth_m) = numeric_limits<double>::max();
94  zap['B'] = make_field(R_Hz) = 6.0e3;
95  zap['N'] = make_field(numberOfPrefits) = 1;
96  zap['T'] = make_field(TTS_ns);
97  zap['E'] = make_field(E_GeV) = 1.0e3;
98  zap['d'] = make_field(debug) = 1;
99 
100  zap(argc, argv);
101  }
102  catch(const exception& error) {
103  FATAL(error.what() << endl);
104  }
105 
106 
107  cout.tie(&cerr);
108 
109 
111 
112  try {
113  load(detectorFile, detector);
114  }
115  catch(const JException& error) {
116  FATAL(error);
117  }
118 
119  const JModuleRouter router(detector);
120 
121 
122  typedef vector<JHitL0> JDataL0_t;
123  const JBuildL0<JHitL0> buildL0;
124 
125 
126  typedef JRegressor<JLine3Z, JGandalf> JRegressor_t;
127 
129  JRegressor_t::T_ns.setRange(-50.0, +50.0); // ns
130  JRegressor_t::Vmax_npe = 10.0; // npe
131  JRegressor_t::MAXIMUM_ITERATIONS = 10000;
132 
133  JRegressor_t fit(pdfFile, TTS_ns);
134 
135  for (int i = 0; i != JRegressor_t::NUMBER_OF_PDFS; ++i) {
136  fit.npe[i].transform(JRegressor_t::JNPE_t::transformer_type::getDefaultTransformer()); // get rid of R-dependent weight function
137  }
138 
139  fit.estimator.reset(new JMEstimatorLorentzian());
140 
141  fit.parameters.resize(4);
142 
143  fit.parameters[0] = JLine3Z::pX();
144  fit.parameters[1] = JLine3Z::pY();
145  fit.parameters[2] = JLine3Z::pDX();
146  fit.parameters[3] = JLine3Z::pDY();
147 
148  if (fit.getRmax() < roadWidth_m) {
149 
150  roadWidth_m = fit.getRmax();
151 
152  WARNING("Set road width to [m] " << roadWidth_m << endl);
153  }
154 
155  const double Rmax_m = 100.0; //!< hit selection [m]
156  const double Tmax_ns = 10.0; //!< hit selection [ns]
157 
158 
159  outputFile.open();
160 
161  outputFile.put(JMeta(argc, argv));
162 
163  while (inputFile.hasNext()) {
164 
165  STATUS("event: " << setw(10) << inputFile.getCounter() << '\r'); DEBUG(endl);
166 
167  multi_pointer_type ps = inputFile.next();
168 
169  const JDAQEvent* tev = ps;
170  const JEvt* in = ps;
171 
172  JEvt cp = *in;
173  JEvt out;
174 
175  cp.select(numberOfPrefits, qualitySorter);
176 
177 
178  JDataL0_t dataL0;
179 
180  buildL0(*tev, router, true, back_inserter(dataL0));
181 
182 
183  for (JEvt::const_iterator track = cp.begin(); track != cp.end(); ++track) {
184 
185  const JRotation3D R (getDirection(*track));
186  const JLine1Z tz(getPosition (*track).rotate(R), track->getT());
187  const JModel<JLine1Z> match(tz, roadWidth_m, JRegressor_t::T_ns);
188 
189  // hit selection based on start value
190 
192 
194 
195  for (JDataL0_t::const_iterator i = dataL0.begin(); i != dataL0.end(); ++i) {
196 
197  JHitW0 hit(*i, R_Hz);
198 
199  hit.rotate(R);
200 
201  if (match(hit)) {
202 
203  top.insert(hit.getPMTIdentifier());
204 
205  const double t1 = hit.getT() - tz.getT(hit);
206 
207  if (tz.getDistance(hit) <= Rmax_m && t1 >= -Tmax_ns && t1 <= +Tmax_ns) {
208  Z.include(hit.getZ() - tz.getDistance(hit) / getTanThetaC());
209  }
210  }
211  }
212 
213 
214  vector<JPMTW0> buffer;
215 
216  for (JDetector::const_iterator module = detector.begin(); module != detector.end(); ++module) {
217 
218  JPosition3D pos(module->getPosition());
219 
220  pos.rotate(R);
221 
222  if (tz.getDistance(pos) <= roadWidth_m && Z(pos.getZ() - tz.getDistance(pos) / getTanThetaC())) {
223 
224  for (unsigned int i = 0; i != module->size(); ++i) {
225 
226  const JDAQPMTIdentifier id(module->getID(), i);
227 
228  JPMT pmt(module->getPMT(i));
229 
230  pmt.rotate(R);
231 
232  buffer.push_back(JPMTW0(pmt, R_Hz, top.count(id)));
233  }
234  }
235  }
236 
237 
238  const int NDF = buffer.size() - fit.parameters.size();
239 
240  if (NDF >= 0) {
241 
242  // set fit parameters
243 
244  if (track->getE() > 0.1)
245  fit.E_GeV = track->getE();
246  else
247  fit.E_GeV = E_GeV;
248 
249  const double chi2 = fit(JLine3Z(tz), buffer.begin(), buffer.end());
250 
251  JTrack3D tb(fit.value);
252 
253  tb.rotate_back(R);
254 
255  out.push_back(getFit(JMUONPATH, tb, getQuality(chi2), NDF));
256 
257  out.rbegin()->setW(track->getW());
258  }
259  }
260 
261  // apply default sorter
262 
263  sort(out.begin(), out.end(), qualitySorter);
264 
265  outputFile.put(out);
266  }
267  STATUS(endl);
268 
270 
271  io >> outputFile;
272 
273  outputFile.close();
274 }
Auxiliary class for ROOT I/O of application specific meta data.
Definition: JMeta.hh:70
Object writing to file.
Utility class to parse command line options.
Definition: JParser.hh:1517
General exception.
Definition: JException.hh:23
#define WARNING(A)
Definition: JMessage.hh:65
static const int JMUONPATH
double getQuality(const double chi2, const int NDF)
Get quality of fit.
range_type & include(argument_type x)
Include given value to range.
Definition: JRange.hh:397
Template specialisation of L0 builder for JHitL0 data type.
Definition: JBuildL0.hh:102
Auxiliary class for handling PMT geometry, rate and response.
Definition: JPMTW0.hh:22
#define STATUS(A)
Definition: JMessage.hh:63
Detector data structure.
Definition: JDetector.hh:89
Router for direct addressing of module data in detector data structure.
Rotation matrix.
Definition: JRotation3D.hh:111
General purpose class for parallel reading of objects from a single file or multiple files...
Template specialisation of class JModel to match hit with muon trajectory along z-axis.
Definition: JFit/JModel.hh:34
Data structure for fit of straight line in positive z-direction.
Definition: JLine3Z.hh:36
string outputFile
bool qualitySorter(const JFit &first, const JFit &second)
Comparison of fit results.
Type list.
Definition: JTypeList.hh:22
Auxiliary class for defining the range of iterations of objects.
Definition: JLimit.hh:41
JAxis3D & rotate(const JRotation3D &R)
Rotate axis.
Definition: JAxis3D.hh:225
Detector file.
Definition: JHead.hh:226
JDirection3D getDirection(const Vec &dir)
Get direction.
Acoustic event fit.
#define make_field(A,...)
macro to convert parameter to JParserTemplateElement object
Definition: JParser.hh:1993
Data structure for PMT geometry, calibration and status.
Definition: JPMT.hh:43
JPosition3D getPosition(const Vec &pos)
Get position.
then usage $script[distance] fi case set_variable R
Definition: JDrawLED.sh:43
#define FATAL(A)
Definition: JMessage.hh:67
Auxiliary class for a hit with background rate value.
Definition: JHitW0.hh:21
void load(const std::string &file_name, JDetector &detector)
Load detector from input file.
JFit getFit(const int id, const JMODEL::JString &string)
Get fit parameters of string.
Regressor function object for JLine3Z fit using JGandalf minimiser.
then if[[!-f $DETECTOR]] then JDetector sh $DETECTOR fi cat $WORKDIR trigger_parameters txt<< EOFtrigger3DMuon.enabled=1;trigger3DMuon.numberOfHits=5;trigger3DMuon.gridAngle_deg=1;ctMin=0.0;TMaxLocal_ns=15.0;EOF set_variable TRIGGEREFFICIENCY_TRIGGERED_EVENTS_ONLY INPUT_FILES=() for((i=1;$i<=$NUMBER_OF_RUNS;++i));do JSirene.sh $DETECTOR $JPP_DATA/genhen.km3net_wpd_V2_0.evt.gz $WORKDIR/sirene_ ${i}.root JTriggerEfficiency.sh $DETECTOR $DETECTOR $WORKDIR/sirene_ ${i}.root $WORKDIR/trigger_efficiency_ ${i}.root $WORKDIR/trigger_parameters.txt $JPP_DATA/PMT_parameters.txt INPUT_FILES+=($WORKDIR/trigger_efficiency_ ${i}.root) done for ANGLE_DEG in $ANGLES_DEG[*];do set_variable SIGMA_NS 3.0 set_variable OUTLIERS 3 set_variable OUTPUT_FILE $WORKDIR/matrix\[${ANGLE_DEG}\deg\].root $JPP_DIR/examples/JReconstruction-f"$INPUT_FILES[*]"-o $OUTPUT_FILE-S ${SIGMA_NS}-A ${ANGLE_DEG}-O ${OUTLIERS}-d ${DEBUG}--!fiif[[$OPTION=="plot"]];then if((0));then for H1 in h0 h1;do JPlot1D-f"$WORKDIR/matrix["${^ANGLES_DEG}" deg].root:${H1}"-y"1 2e3"-Y-L TR-T""-\^"number of events [a.u.]"-> o chi2
Definition: JMatrixNZ.sh:106
Data structure for fit of straight line paralel to z-axis.
Definition: JLine1Z.hh:27
then cp
double getTanThetaC()
Get average tangent of Cherenkov angle of water corresponding to group velocity.
do set_variable MODULE getModule a $WORKDIR detector_a datx L $STRING JEditDetector a $WORKDIR detector_a datx M $MODULE setz o $WORKDIR detector_a datx JEditDetector a $WORKDIR detector_b datx M $MODULE setz o $WORKDIR detector_b datx done echo Output stored at $WORKDIR detector_a datx and $WORKDIR tripod_a txt JDrawDetector2D a $WORKDIR detector_a datx a $WORKDIR detector_b datx L BL o detector $FORMAT $BATCH JDrawDetector2D T $WORKDIR tripod_a txt T $WORKDIR tripod_b txt L BL o tripod $FORMAT $BATCH JCompareDetector a $WORKDIR detector_a datx b $WORKDIR detector_b datx o $WORKDIR abc root &dev null for KEY in X Y Z
Object reading from a list of files.
Data structure for position in three dimensions.
Definition: JPosition3D.hh:36
const JLimit & getLimit() const
Get limit.
Definition: JLimit.hh:73
do set_variable DETECTOR_TXT $WORKDIR detector
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY JAcoustics sh $DETECTOR_ID source JAcousticsToolkit sh CHECK_EXIT_CODE typeset A EMITTERS get_tripods $WORKDIR tripod txt EMITTERS get_transmitters $WORKDIR transmitter txt EMITTERS for EMITTER in
Definition: JCanberra.sh:46
JPosition3D & rotate(const JRotation3D &R)
Rotate.
Definition: JPosition3D.hh:186
Lorentzian M-estimator.
Definition: JMEstimator.hh:65
int debug
debug level
#define DEBUG(A)
Message macros.
Definition: JMessage.hh:62