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JConstructDetector.cc File Reference

Auxiliary program to compose detector from separate calibrations. More...

#include <string>
#include <iostream>
#include <iomanip>
#include <fstream>
#include <vector>
#include <map>
#include "JDetector/JDetector.hh"
#include "JDetector/JDetectorCalibration.hh"
#include "JDetector/JDetectorToolkit.hh"
#include "JDetector/JDetectorAddressMapToolkit.hh"
#include "JDetector/JModuleRouter.hh"
#include "JDetector/JPMTRouter.hh"
#include "JSupport/JMeta.hh"
#include "JSon/JSon.hh"
#include "Jeep/JeepToolkit.hh"
#include "Jeep/JPrint.hh"
#include "Jeep/JParser.hh"
#include "Jeep/JMessage.hh"

Go to the source code of this file.

Functions

int main (int argc, char **argv)
 

Detailed Description

Auxiliary program to compose detector from separate calibrations.

Author
mdejong

Definition in file JConstructDetector.cc.

Function Documentation

int main ( int  argc,
char **  argv 
)

Definition at line 30 of file JConstructDetector.cc.

31 {
32  using namespace std;
33  using namespace JPP;
34 
35  string detectorFile;
36  vector<string> inputFile;
37  string outputFile;
38  int debug;
39 
40  try {
41 
42  JParser<> zap("Auxiliary program to compose detector from separate calibrations.");
43 
44  zap['a'] = make_field(detectorFile, "detector file");
45  zap['f'] = make_field(inputFile, "detector calibration files in JSON format "\
46  "(wild card \'" << FILENAME_WILD_CARD << "\' will be replaced by corresponding calibration set)");
47  zap['o'] = make_field(outputFile, "detector file") = "";
48  zap['d'] = make_field(debug) = 1;
49 
50  zap(argc, argv);
51  }
52  catch(const exception &error) {
53  FATAL(error.what() << endl);
54  }
55 
56 
57  JDetector detector;
58 
59  try {
60  load(detectorFile, detector);
61  }
62  catch(const JException& error) {
63  FATAL(error);
64  }
65 
66  if (!hasDetectorAddressMap(detector.getID())) {
67  FATAL("No detector address map for detector identier " << detector.getID() << endl);
68  }
69 
70  const JDetectorAddressMap& demo = getDetectorAddressMap(detector.getID());
71 
72  const JModuleRouter moduleRouter(detector);
73  const JPMTRouter pmtRouter (detector);
74 
75 
76  enum {
77  UNDEFINED = 0,
78  DEFINED = 1
79  };
80 
81  struct status_type {
82 
83  status_type() :
84  value(UNDEFINED)
85  {}
86 
87  operator int() const { return value; }
88 
89  status_type& operator=(const int value)
90  {
91  this->value = value;
92 
93  return *this;
94  }
95 
96  int value;
97  };
98 
99  typedef map<int, status_type> map_type;
100 
101  map_type tcal;
102  map_type pcal;
103  map_type rcal;
104  map_type acal;
105  map_type ccal;
106  map_type scal[2];
107 
108 
109  for (const auto& file_name : inputFile) {
110 
111  vector<string> buffer;
112 
113  if (hasWildCard(file_name))
114  buffer = { setWildCard(file_name, TCAL),
115  setWildCard(file_name, PCAL),
116  setWildCard(file_name, RCAL),
117  setWildCard(file_name, ACAL),
118  setWildCard(file_name, CCAL),
119  setWildCard(file_name, SCAL) };
120  else
121  buffer = { file_name };
122 
123  for (const auto& file_name : buffer) {
124 
125  const JSon js(file_name);
126 
127  json::const_iterator data;
128 
129  if (is_valid(js) && (data = js.find(Data_t)) != js.end()) {
130 
131  detector.comment.add(MAKE_STRING("calibration=" << (js.contains(Comment_t) ? js[Comment_t] : "?")));
132 
133  for (size_t i = 0; i != data->size(); ++i) {
134 
135  if (data->at(i).contains(DetID_t)) {
136  if (data->at(i)[DetID_t].get<int>() != detector.getID()) {
137  FATAL("Detector identifier mismatch " << data->at(i)[DetID_t].get<int>() << " != " << detector.getID() << endl);
138  }
139  }
140 
141  if (data->at(i).contains(PMTT0s_t)) {
142 
143  for (const auto& element : data->at(i)[PMTT0s_t].get<JPMTCalibration>()) {
144 
145  if (pmtRouter.hasPMT(element.getID())) {
146 
147  JPMT& pmt = detector.getPMT(pmtRouter.getAddress(element.getID()));
148 
149  pmt.setCalibration(element.getCalibration());
150 
151  tcal[pmt.getID()] = DEFINED;
152  }
153  }
154  }
155 
156  if (data->at(i).contains(DOMPositions_t)) {
157 
158  for (const auto& element : data->at(i)[DOMPositions_t].get<JModulePosition>()) {
159 
160  if (moduleRouter.hasModule(element.getID())) {
161 
162  JModule& module = detector.getModule(moduleRouter.getAddress(element.getID()));
163 
164  module.add(element.getPosition()); // position of reference module may not exactly be at origin
165 
166  pcal[module.getID()] = DEFINED;
167  }
168  }
169  }
170 
171  if (data->at(i).contains(BasePositions_t)) {
172 
173  for (const auto& element : data->at(i)[BasePositions_t].get<JModulePosition>()) {
174 
175  if (moduleRouter.hasModule(element.getID())) {
176 
177  JModule& module = detector.getModule(moduleRouter.getAddress(element.getID()));
178 
179  module.add(element.getPosition());
180 
181  pcal[module.getID()] = DEFINED;
182  }
183  }
184  }
185 
186  if (data->at(i).contains(DOMRotations_t)) {
187 
188  for (const auto& element : data->at(i)[DOMRotations_t].get<JModuleRotation>()) {
189 
190  if (moduleRouter.hasModule(element.getID())) {
191 
192  JModule& module = detector.getModule(moduleRouter.getAddress(element.getID()));
193 
194  const JModule buffer = getModule(demo.get(module.getID()), module.getID());
195 
196  if (module.size() != buffer.size()) {
197  FATAL("Module size " << module.size() << " != " << buffer.size() << endl);
198  }
199 
200  const JPosition3D center = module.getCenter();
201 
202  for (size_t i = 0; i != module.size(); ++i) {
203  module.getPMT(i).setAxis(buffer.getPMT(i).getAxis());
204  }
205 
206  module.rotate(element.getQuaternion());
207 
208  module.setPosition(module.getCenter());
209  module.set(center);
210 
211  rcal[module.getID()] = DEFINED;
212  }
213  }
214  }
215 
216  if (data->at(i).contains(DOMAcousticT0_t)) {
217 
218  for (const auto& element : data->at(i)[DOMAcousticT0_t].get<JModuleCalibration>()) {
219 
220  if (moduleRouter.hasModule(element.getID())) {
221 
222  JModule& module = detector.getModule(moduleRouter.getAddress(element.getID()));
223 
224  module.setCalibration(element.getCalibration());
225 
226  acal[module.getID()] = DEFINED;
227  }
228  }
229  }
230 
231  if (data->at(i).contains(BaseAcousticT0_t)) {
232 
233  for (const auto& element : data->at(i)[BaseAcousticT0_t].get<JModuleCalibration>()) {
234 
235  if (moduleRouter.hasModule(element.getID())) {
236 
237  JModule& module = detector.getModule(moduleRouter.getAddress(element.getID()));
238 
239  module.setCalibration(element.getCalibration());
240 
241  acal[module.getID()] = DEFINED;
242  }
243  }
244  }
245 
246  if (data->at(i).contains(DOMCompassRotations_t)) {
247 
248  for (const auto& element : data->at(i)[DOMCompassRotations_t].get<JCompassRotation>()) {
249 
250  if (moduleRouter.hasModule(element.getID())) {
251 
252  JModule& module = detector.getModule(moduleRouter.getAddress(element.getID()));
253 
254  module.setQuaternion(element.getQuaternion());
255 
256  ccal[module.getID()] = DEFINED;
257  }
258  }
259  }
260 
261  if (data->at(i).contains(BaseCompassRotations_t)) {
262 
263  for (const auto& element : data->at(i)[BaseCompassRotations_t].get<JCompassRotation>()) {
264 
265  if (moduleRouter.hasModule(element.getID())) {
266 
267  JModule& module = detector.getModule(moduleRouter.getAddress(element.getID()));
268 
269  module.setQuaternion(element.getQuaternion());
270 
271  ccal[module.getID()] = DEFINED;
272  }
273  }
274  }
275 
276  if (data->at(i).contains(PMTStatusInfo_t)) {
277 
278  for (const auto& element : data->at(i)[PMTStatusInfo_t].get<JPMTStatus>()) {
279 
280  if (pmtRouter.hasPMT(element.getID())) {
281 
282  JPMT& pmt = detector.getPMT(pmtRouter.getAddress(element.getID()));
283 
284  pmt.setStatus(element.getStatus());
285 
286  scal[0][pmt.getID()] = DEFINED;
287  }
288  }
289  }
290 
291  if (data->at(i).contains(DOMStatusInfo_t)) {
292 
293  for (const auto& element : data->at(i)[DOMStatusInfo_t].get<JModuleStatus>()) {
294 
295  if (moduleRouter.hasModule(element.getID())) {
296 
297  JModule& module = detector.getModule(moduleRouter.getAddress(element.getID()));
298 
299  module.setStatus(element.getStatus());
300 
301  scal[1][module.getID()] = DEFINED;
302  }
303  }
304  }
305 
306  if (data->at(i).contains(BaseStatusInfo_t)) {
307 
308  for (const auto& element : data->at(i)[BaseStatusInfo_t].get<JModuleStatus>()) {
309 
310  if (moduleRouter.hasModule(element.getID())) {
311 
312  JModule& module = detector.getModule(moduleRouter.getAddress(element.getID()));
313 
314  module.setStatus(element.getStatus());
315 
316  scal[1][module.getID()] = DEFINED;
317  }
318  }
319  }
320  }
321  }
322  }
323  }
324 
325  for (JDetector::const_iterator module = detector.begin(); module != detector.end(); ++module) {
326 
327  if (pcal [module->getID()] != DEFINED) { ERROR("Module " << setw(10) << module->getID() << ' ' << getLabel(module->getLocation()) << " no position calibration." << endl); }
328  if (rcal [module->getID()] != DEFINED &&
329  module->getFloor() != 0) { ERROR("Module " << setw(10) << module->getID() << ' ' << getLabel(module->getLocation()) << " no rotation calibration." << endl); }
330  if (acal [module->getID()] != DEFINED) { ERROR("Module " << setw(10) << module->getID() << ' ' << getLabel(module->getLocation()) << " no acoustics calibration." << endl); }
331  if (ccal [module->getID()] != DEFINED) { ERROR("Module " << setw(10) << module->getID() << ' ' << getLabel(module->getLocation()) << " no compass calibration." << endl); }
332  if (scal[1][module->getID()] != DEFINED) { ERROR("Module " << setw(10) << module->getID() << ' ' << getLabel(module->getLocation()) << " no status calibration." << endl); }
333 
334  for (JModule::const_iterator pmt = module->begin(); pmt != module->end(); ++pmt) {
335  if (tcal [pmt->getID()] != DEFINED) { ERROR("PMT " << setw(8) << pmt->getID() << " no time calibration." << endl); }
336  if (scal[0][pmt->getID()] != DEFINED) { ERROR("PMT " << setw(8) << pmt->getID() << " no status calibration." << endl); }
337  }
338  }
339 
340 
341  detector.comment.add(JMeta(argc,argv));
342 
343  try {
344  if (outputFile != "")
345  store(outputFile, detector);
346  else
347  cout << detector << endl;
348  }
349  catch(const JException& error) {
350  FATAL(error);
351  }
352 
353  return 0;
354 }
JDETECTOR::JPMTRouter
Router for direct addressing of PMT data in detector data structure.
Definition: JPMTRouter.hh:35
JSUPPORT::JMeta
Auxiliary class for ROOT I/O of application specific meta data.
Definition: JMeta.hh:70
JPARSER::JParser
Utility class to parse command line options.
Definition: JParser.hh:1517
JLANG::JException
General exception.
Definition: JException.hh:23
JSON::DOMStatusInfo_t
static const std::string DOMStatusInfo_t
Definition: JSon/JSupport.hh:80
JDETECTOR::JLocation::getFloor
int getFloor() const
Get floor number.
Definition: JLocation.hh:145
JDETECTOR::JModule
Data structure for a composite optical module.
Definition: JModule.hh:68
JSON::ACAL
static const std::string ACAL
acoustic time offsets (piezo sensor or hydrophone)
Definition: JSon/JSupport.hh:28
scal
clean eval JPrintDetector a $DETECTOR O IDENTIFIER for CALSET in tcal rcal pcal ccal acal scal
Definition: archive-get-Detector.sh:37
JDETECTOR::getLabel
std::string getLabel(const JLocation &location)
Get module label for monitoring and other applications.
Definition: JLocation.hh:246
JSON::CCAL
static const std::string CCAL
compass alignment (a.k.a. quaternion calibration)
Definition: JSon/JSupport.hh:29
JSON::is_valid
bool is_valid(const json &js)
Check validity of JSon data.
Definition: JSon/JSupport.hh:128
JDETECTOR::JDetector
Detector data structure.
Definition: JDetector.hh:89
JSON::PMTT0s_t
static const std::string PMTT0s_t
Definition: JSon/JSupport.hh:75
JDETECTOR::JModuleRouter
Router for direct addressing of module data in detector data structure.
Definition: JModuleRouter.hh:36
JDETECTOR::hasDetectorAddressMap
bool hasDetectorAddressMap(const int id)
Check if detector address map is available.
Definition: JDetectorAddressMapToolkit.hh:524
JGEOMETRY3D::JAxis3D::setAxis
void setAxis(const JAxis3D &axis)
Set axis.
Definition: JAxis3D.hh:109
JDETECTOR::JDetectorAddressMap
Lookup table for PMT addresses in detector.
Definition: JDetectorAddressMap.hh:25
outputFile
string outputFile
Definition: JDAQTimesliceSelector.cc:37
JSON::BaseStatusInfo_t
static const std::string BaseStatusInfo_t
Definition: JSon/JSupport.hh:84
MAKE_STRING
#define MAKE_STRING(A)
Make string.
Definition: JPrint.hh:127
JSON::TCAL
static const std::string TCAL
PMT time offsets.
Definition: JSon/JSupport.hh:25
JSON::Comment_t
static const std::string Comment_t
Definition: JSon/JSupport.hh:45
JAANET::detector
Detector file.
Definition: JHead.hh:226
JGEOMETRY3D::JQuaternion3D::setQuaternion
void setQuaternion(const JQuaternion3D &quaternion)
Set quaternion.
Definition: JQuaternion3D.hh:498
JDETECTOR::JLocation::getLocation
const JLocation & getLocation() const
Get location.
Definition: JLocation.hh:69
make_field
#define make_field(A,...)
macro to convert parameter to JParserTemplateElement object
Definition: JParser.hh:1993
JLANG::JObjectID::getID
int getID() const
Get identifier.
Definition: JObjectID.hh:50
JDETECTOR::JPMT
Data structure for PMT geometry, calibration and status.
Definition: JPMT.hh:43
JDETECTOR::store
void store(const std::string &file_name, const JDetector &detector)
Store detector to output file.
Definition: JDetectorToolkit.hh:579
ERROR
#define ERROR(A)
Definition: JMessage.hh:66
JSON::DOMPositions_t
static const std::string DOMPositions_t
Definition: JSon/JSupport.hh:76
JDETECTOR::JModule::getCenter
JVector3D getCenter() const
Get center of module based on crossing point of PMT axes.
Definition: JModule.hh:215
JDETECTOR::getDetectorAddressMap
JDetectorAddressMap & getDetectorAddressMap()
Get detector address map.
Definition: JDetectorAddressMapToolkit.hh:388
JSON::RCAL
static const std::string RCAL
(optical|base) module orientations
Definition: JSon/JSupport.hh:27
JDETECTOR::JModule::getPMT
const JPMT & getPMT(const int index) const
Get PMT.
Definition: JModule.hh:173
JDETECTOR::JModule::rotate
void rotate(const JRotation3D &R)
Rotate module.
Definition: JModule.hh:315
JSON::DOMCompassRotations_t
static const std::string DOMCompassRotations_t
Definition: JSon/JSupport.hh:79
JEEP::JStatus::setStatus
void setStatus(const JStatus &status)
Set status.
Definition: JStatus.hh:97
FATAL
#define FATAL(A)
Definition: JMessage.hh:67
JEEP::setWildCard
std::string setWildCard(const std::string &file_name, const std::string &value)
Get file name by setting wild card to given value.
Definition: JeepToolkit.hh:66
JSON::Data_t
static const std::string Data_t
Definition: JSon/JSupport.hh:66
JDETECTOR::load
void load(const std::string &file_name, JDetector &detector)
Load detector from input file.
Definition: JDetectorToolkit.hh:486
JSON::SCAL
static const std::string SCAL
(module|PMT) status
Definition: JSon/JSupport.hh:30
JDETECTOR::JCalibration::setCalibration
void setCalibration(const JCalibration &cal)
Set calibration.
Definition: JDetector/JCalibration.hh:89
JSON::BasePositions_t
static const std::string BasePositions_t
Definition: JSon/JSupport.hh:81
JSON::DOMRotations_t
static const std::string DOMRotations_t
Definition: JSon/JSupport.hh:77
JGEOMETRY3D::JAxis3D::getAxis
const JAxis3D & getAxis() const
Get axis.
Definition: JAxis3D.hh:98
JEEP::FILENAME_WILD_CARD
static const char FILENAME_WILD_CARD
wild card character for file name substitution
Definition: JeepToolkit.hh:44
JGEOMETRY3D::JPosition3D
Data structure for position in three dimensions.
Definition: JPosition3D.hh:36
JSON::BaseCompassRotations_t
static const std::string BaseCompassRotations_t
Definition: JSon/JSupport.hh:83
JSON::JSon
Auxiliary class to load json data from file.
Definition: JSon.hh:61
detector
do set_variable DETECTOR_TXT $WORKDIR detector
Definition: detector-XY:fit1d.sh:38
JSON::PMTStatusInfo_t
static const std::string PMTStatusInfo_t
Definition: JSon/JSupport.hh:91
JSON::PCAL
static const std::string PCAL
(optical|base) module positions
Definition: JSon/JSupport.hh:26
JSON::DetID_t
static const std::string DetID_t
Definition: JSon/JSupport.hh:100
JDETECTOR::JModule::set
JModule & set(const JVector3D &pos)
Set position.
Definition: JModule.hh:408
JSON::DOMAcousticT0_t
static const std::string DOMAcousticT0_t
Definition: JSon/JSupport.hh:78
getModule
const JModule & getModule(const JDetector &detector, const JModuleLocation &location)
find module with a given string and floor number
Definition: JBeaconSimulator.cc:928
debug
int debug
debug level
Definition: archive-put-wiki-detectors.sh:92
JSON::BaseAcousticT0_t
static const std::string BaseAcousticT0_t
Definition: JSon/JSupport.hh:82
JDETECTOR::JModule::add
JModule & add(const JVector3D &pos)
Add position.
Definition: JModule.hh:420
JGEOMETRY3D::JPosition3D::setPosition
void setPosition(const JVector3D &pos)
Set position.
Definition: JPosition3D.hh:152
JEEP::hasWildCard
bool hasWildCard(const std::string &file_name)
Check presence of wild card.
Definition: JeepToolkit.hh:53
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