launch_pre-calibration_D1ORCA011.sh

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#!/bin/zsh

# SLURM options:

#SBATCH --job-name=my_job_name                                    # Job name
#SBATCH --output=/my_directory_for_the_log_err_files/myjob.log    # Standard output log
#SBATCH --error=/my_directory_for_the_log_err_files/myjob.err     # Standard error log

#SBATCH --partition=htc               # Partition choice
#SBATCH --mem=1000                    # Memory in MB per default
#SBATCH --time=168:00:00              # 7 days by default on htc partition
#SBATCH --ntasks=2                    # number of tasks per job. 2 for multithreading 
#SBATCH --cpus-per-task=2             # number of core per process. 2 for multithreading


#SBATCH --mail-user=xxxx@km3net.de    # Where to send mail
#SBATCH --mail-type=END,FAIL          # Mail events (NONE, BEGIN, END, FAIL, ALL)
#SBATCH -L sps
#SBATCH --export=ALL
#SBATCH --wckey=P_km3net

# Template example to launch the pre-calibration script for D1ORCA011.
# Commands to be submitted:

. /usr/share/Modules/init/zsh

export TMPDIR=/tmp

# If you have already a jpp module loaded and you want to use your own local version
# you must unload it, load a root module and point to your local Jpp
module unload jpp
module load root/6.22.06
export JPP_DIR=/my_Jpp_directory/myJpp
source $JPP_DIR/setenv.sh $JPP_DIR

# the directory were the script will be run
export MYDIR=/my_calibration_directory/ORCA/D1ORCA011-acoustics.master_multiThread
# the directory containing the detector and tripod files from which the scan starts with
export PREVGEOMDIR=/my_calibration_directory/ORCA/D0ORCA010_fromArchive
# we use the pre-calibration script 
$JPP_DIR/examples/JAcoustics/pre-calibration_00000132.sh $PREVGEOMDIR/detector.datx $PREVGEOMDIR/tripod.txt $MYDIR
# the sstat command is useful to get details on the job.
sstat  -j   $SLURM_JOB_ID.batch   --format=AveCPU,MinCPU,JobID,MaxVMSize,MaxRSS