JARCAMuonReconstruction.sh

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#!/bin/zsh
#
# \author bofearraigh
#
script=${0##*/}

# ------------------------------------------------------------------------------------------
#
#                         Script to run the JPP Track Reconstruction Chain for ARCA.
#
# ------------------------------------------------------------------------------------------

if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi

source $JPP_DIR/setenv.sh $JPP_DIR
source $JPP_DIR/externals/km3net-dataformat/definitions/reconstruction.sh

set_variable:  DEBUG             RECONSTRUCTION_DEBUG                1
set_variable:  PDF               RECONSTRUCTION_PDF                  $JPP_DATA/J%p.dat
set_variable:  SUFFIX            RECONSTRUCTION_SUFFIX               jmuon
set_variable:  ENERGY_CORRECTION RECONSTRUCTION_ENERGY_CORRECTION    energy_correction_arca.txt
set_variable:  NUMBER_OF_EVENTS  RECONSTRUCTION_NUMBER_OF_EVENTS     $((2**31))
set_variable+  OVERWRITE         RECONSTRUCTION_OVERWRITE            1
set_variable:  TMAX_S            RECONSTRUCTION_TMAX_S               100

if do_usage $*; then
    usage "$script <detector file> <input file> <output file> <PMT parameters file> [(calibration file)+]"
fi

if (( $# < 4 )); then
    fatal "Wrong number of arguments."
fi

set_variable DETECTOR        $argv[1]
set_variable INPUT_FILE      $argv[2]
set_variable OUTPUT_FILE     $argv[3]
set_variable PMT             $argv[4]
set_array    CALIBRATION     $argv[5,-1]

if [[ ! "$OUTPUT_FILE" == *"%"* ]]; then
  fatal "The output file must have the wildcard % in the name, e.g. %.root"
fi

typeset -A PARAMETERS
typeset -a APPLICATIONS

APPLICATIONS=()


if [[ "$OVERWRITE" == 1 ]]; then
    rm -vf \
        ${OUTPUT_FILE/\%/jprefit}         \
        ${OUTPUT_FILE/\%/jsimplex}        \
        ${OUTPUT_FILE/\%/jgandalf}        \
        ${OUTPUT_FILE/\%/jstart}          \
        ${OUTPUT_FILE/\%/jenergy}         \
        ${OUTPUT_FILE/\%/jhistory}        \
        ${OUTPUT_FILE/\%/${SUFFIX}}       \
        ${OUTPUT_FILE/\%/${SUFFIX}.offline}
fi

if (( ${#CALIBRATION} != 0 )); then
    getMechanics.sh  $DETECTOR
fi


# ------------------------------------------------------------------------------------------
#                                       JMuonPrefit
# ------------------------------------------------------------------------------------------

PARAMETERS=(
    sigma_ns           5
    gridAngle_deg      1
    useL0              0
    numberOfOutliers   3
    numberOfPrefits    50
    DZMax              0.0
    numberOfDZMax      1
    TMaxLocal_ns       18
    ctMin              0.0
    roadWidth_m        200.0)

timer_start

eval JMuonPrefit \
    -a $DETECTOR                   \
    -+${^CALIBRATION}              \
    -T $TMAX_S                     \
    -f $INPUT_FILE                 \
    -o ${OUTPUT_FILE/\%/jprefit}   \
    -n ${NUMBER_OF_EVENTS}         \
    -@ `make_equation PARAMETERS`  \
    -d $DEBUG --!

CHECK_EXIT_CODE

APPLICATIONS+=$JMUONPREFIT

timer_stop
timer_print


# ------------------------------------------------------------------------------------------
#                                       JMuonSimplex
# ------------------------------------------------------------------------------------------

PARAMETERS=(
    sigma_ns         3
    TMaxLocal_ns     15.0
    ctMin            0.0
    roadWidth_m      200.0
    numberOfPrefits  0)

timer_start

eval JMuonSimplex \
    -a $DETECTOR                   \
    -+${^CALIBRATION}              \
    -T $TMAX_S                     \
    -f ${OUTPUT_FILE/\%/jprefit}   \
    -o ${OUTPUT_FILE/\%/jsimplex}  \
    -@ `make_equation PARAMETERS`  \
    -d ${DEBUG} --!

CHECK_EXIT_CODE

rm -vf ${OUTPUT_FILE/\%/jprefit}

APPLICATIONS+=$JMUONSIMPLEX

timer_stop
timer_print


# ------------------------------------------------------------------------------------------
#                                       JMuonGandalf
# ------------------------------------------------------------------------------------------

PARAMETERS=(
    TTS_ns            2
    E_GeV             1.0e3
    TMin_ns            -50.0
    TMax_ns           +450.0
    R_Hz              6.0e3
    roadWidth_m       175.0
    numberOfPrefits   0)

timer_start

eval JMuonGandalf \
    -a $DETECTOR                   \
    -+${^CALIBRATION}              \
    -T $TMAX_S                     \
    -f ${OUTPUT_FILE/\%/jsimplex}  \
    -o ${OUTPUT_FILE/\%/jgandalf}  \
    -P $PDF                        \
    -@ `make_equation PARAMETERS`  \
    -d $DEBUG --!

CHECK_EXIT_CODE

rm -vf ${OUTPUT_FILE/\%/jsimplex}

APPLICATIONS+=$JMUONGANDALF

timer_stop
timer_print


# ------------------------------------------------------------------------------------------
#                                       JMuonStart
# ------------------------------------------------------------------------------------------

PARAMETERS=(
    roadWidth_m      160.0
    R_Hz             6.0e3
    TMin_ns          -25.0
    TMax_ns          +75.0
    Pmin1            1.0e-3
    Pmin2            1.0e-2
    numberOfPrefits  1)

timer_start

eval JMuonStart \
    -a $DETECTOR                   \
    -+${^CALIBRATION}              \
    -T $TMAX_S                     \
    -f ${OUTPUT_FILE/\%/jgandalf}  \
    -o ${OUTPUT_FILE/\%/jstart}    \
    -P $PDF                        \
    -@ `make_equation PARAMETERS`  \
    -d $DEBUG --!

CHECK_EXIT_CODE

rm -vf ${OUTPUT_FILE/\%/jgandalf}

APPLICATIONS+=$JMUONSTART

timer_stop
timer_print


# ------------------------------------------------------------------------------------------
#                                       JMuonEnergy
# ------------------------------------------------------------------------------------------

PARAMETERS=(
    roadWidth_m      200.0
    R_Hz             6.0e3
    EMin_log         0.0
    EMax_log         8.0
    TMin_ns           -50.0
    TMax_ns          +450.0
    mestimator       1
    numberOfPrefits  1)

timer_start

eval JMuonEnergy \
    -a $DETECTOR                   \
    -+${^CALIBRATION}              \
    -T $TMAX_S                     \
    -f ${OUTPUT_FILE/\%/jstart}    \
    -o ${OUTPUT_FILE/\%/jenergy}   \
    -P $PDF                        \
    -E $ENERGY_CORRECTION          \
    -@ `make_equation PARAMETERS`  \
    -d $DEBUG --!

CHECK_EXIT_CODE

rm -vf ${OUTPUT_FILE/\%/jstart}

APPLICATIONS+=$JMUONENERGY

timer_stop
timer_print


# ------------------------------------------------------------------------------------------
#                                       JHistory
# ------------------------------------------------------------------------------------------

timer_start

JHistory \
    -f ${OUTPUT_FILE/\%/jenergy}   \
    -o ${OUTPUT_FILE/\%/jhistory}  \
    -A "$APPLICATIONS[*]"          \
    -d $DEBUG --!

CHECK_EXIT_CODE

rm -vf ${OUTPUT_FILE/\%/jenergy}

timer_stop
timer_print


# ------------------------------------------------------------------------------------------
#                   rename outputfile and remove intermediate files
# ------------------------------------------------------------------------------------------

timer_start

mv -v \
    ${OUTPUT_FILE/\%/jhistory}    \
    ${OUTPUT_FILE/\%/${SUFFIX}}   

timer_stop
timer_print


# ------------------------------------------------------------------------------------------
#                                       JConvertEvt
# ------------------------------------------------------------------------------------------

timer_start

JConvertEvt \
    -f ${OUTPUT_FILE/\%/${SUFFIX}}          \
    -o ${OUTPUT_FILE/\%/${SUFFIX}.offline}  \
    -a $DETECTOR                            \
    -+${^CALIBRATION}                       \
    -T $TMAX_S                              \
    -P $PMT                                 \
    -d $DEBUG --!

timer_stop
timer_print