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pre-calibration_D0ORCA018.sh
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1 #!/bin/zsh
2 script=${0##*/}
3 
4 # --------------------------------------------------------------------------------------------
5 #
6 # Steering script for the global-fit-of-global-fits procedure of the D0ORCA018 (148) detector.
7 #
8 # --------------------------------------------------------------------------------------------
9 
10 if [ -z $JPP_DIR ]; then
11  echo "Variable JPP_DIR undefined."
12  exit
13 fi
14 
15 source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null
16 
18 set_array RUNS 16662-16668
19 set_variable: THREADS ACOUSTICS_THREADS 5
20 
21 if do_usage $*; then
22  usage "$script <source directory> [user directory]"\
23  "\nThe source directory corresponds to a pre-calibrated D1ORCA015 detector."\
24  "\nThe user directory should be specified when this script is submitted in a batch queue."
25 fi
26 
29 
30 case $# in
32  1) set_variable DIR ${1:a};;
33  *) fatal "Wrong number of arguments."
34 esac
35 
36 
38 set_variable TRIPOD $DIR/tripod.txt
39 set_variable DETECTOR_INITIAL detector_initial.datx
40 set_variable TRIPOD_INITIAL tripod_initial.txt
41 expand_array RUNS
42 
43 
44 # Run in HOMEDIR
45 
46 mkdir -p $HOMEDIR
47 
48 cd $HOMEDIR
49 
50 if [[ ! -f $DETECTOR_INITIAL ]]; then
51 
52  JDetectorDB \
53  -D $DETECTOR_ID \
54  -r $RUNS[1] \
55  -WW \
56  -o $DETECTOR_INITIAL
57 fi
58 
59 if [[ ! -f $TRIPOD_INITIAL ]]; then
60 
61  cat>$TRIPOD_INITIAL<<EOF
62 # position of emitter 5 taken from https://elog.km3net.de/Operations+FR/8271 (RAB1v2)
63 # position of emitter 6 taken from https://elog.km3net.de/Operations+FR/8731 (RAB2)
64 # position of emitter 8 taken from https://elog.km3net.de/Operations+FR/9603 (RAB3)
65 5 +257040.800 +4743317.600 -2439.900
66 6 +256807.500 +4743636.500 -2442.500
67 8 +257118.100 +4743781.100 -2440.300
68 EOF
69 fi
70 
71 JEditDetector \
72  -a $DETECTOR \
73  -o detector_tmp.datx --!
74 
75 eval `JPrintDetector -a $DETECTOR_INITIAL -O SUMMARY`; FINAL_STRINGS=($STRINGS[*])
76 eval `JPrintDetector -a detector_tmp.datx -O SUMMARY`; FIXED_STRINGS=($STRINGS[*])
77 
78 if [[ ! -f detector.datx ]]; then
79 
80  # Apply modifications.
81 
82  JEditDetector \
83  -a $DETECTOR_INITIAL \
84  -o detector.datx --!
85 
86  JEditDetector -a detector.datx -r "$FIXED_STRINGS[*]" -o detector.datx --!
87  JMergeDetector -a detector.datx -a detector_tmp.datx -o detector.datx --!
88  JEditDetector -a detector.datx -k "$FINAL_STRINGS[*]" -o detector.datx --!
89 
90  JEditDetector \
91  -a detector.datx \
92  -M "817315169 swap 14 18" \
93  -o detector.datx --!
94 fi
95 
96 REMOVE_STRINGS=(27 28)
97 
98 FINAL_STRINGS=(${FINAL_STRINGS:|REMOVE_STRINGS})
99 FIXED_STRINGS=(${FIXED_STRINGS:|REMOVE_STRINGS})
100 
101 JEditDetector -a detector.datx -r "$REMOVE_STRINGS[*]" -o detector.datx --!
102 
103 source JAcousticsToolkit.sh
104 
105 typeset -A TRIPODS
106 
107 get_tripods $TRIPOD_INITIAL TRIPODS; FINAL_TRIPODS=(${(k)TRIPODS[*]})
108 get_tripods $TRIPOD TRIPODS; FIXED_TRIPODS=(${(k)TRIPODS[*]})
109 
110 if [[ ! -f tripod.txt ]]; then
111 
112  cp -p $TRIPOD_INITIAL tripod.txt
113 
114  JEditTripod -f tripod.txt -r "${FIXED_TRIPODS}" -o tripod.txt
115  JMergeTripod -f tripod.txt -f $TRIPOD -o tripod.txt
116  JEditTripod -f tripod.txt -k "${FINAL_TRIPODS}" -o tripod.txt
117 fi
118 
120 set_variable TRIPOD tripod.txt
121 
122 echo Fixed strings: $FIXED_STRINGS[*]
123 echo Fixed tripods: $FIXED_TRIPODS[*]
124 
125 JAcoustics.sh $DETECTOR_ID
126 
127 cat>acoustics_trigger_parameters.txt<<EOF
128 Q = 0.0;
129 TMax_s = 0.015;
130 numberOfHits = 210;
131 EOF
132 
133 cat>disable.txt<<EOF
134 # disable transmissions
135 # <emitter identifier> <module identifier>
136 # all emitters and ORCA.0003.16
137 # emitter 3 and ORCA.0018.06
138 # emitter 3 and ORCA.0001.12
139 -1 808966194
140 EOF
141 
142 cat>transmitter.txt<<EOF
143 # Data are derived from the anchor drawing and the sea operation survey (for the heading)
144 # 9 27 0 +0.020 -0.970 +0.710
145 EOF
146 
147 JAcousticsEventBuilder.sh $DETECTOR $RUNS[*]
148 
149 INPUT_FILES=(`ls KM3NeT_${(l:8::0::0:)DETECTOR_ID}_0*${^RUNS}_event.root`)
150 
151 
152 # Run in WORKDIR
153 
154 cd $WORKDIR
155 
156 if [ ! $HOMEDIR -ef $WORKDIR ]; then
157  cp -p $HOMEDIR/$DETECTOR $WORKDIR
158  cp -p $HOMEDIR/${^ACOUSTICS_KEYS}.txt $WORKDIR
159  cp -p $HOMEDIR/${^INPUT_FILES} $WORKDIR
160 fi
161 
162 cat>script.txt<<EOF
163 
164 fix string $FIXED_STRINGS[*]
165 fix tripod $FIXED_TRIPODS[*]
166 
167 stage 1B 1 0 100.0e-6 10.0 0 0.001 0.1
168 stage 2A 1 0 100.0e-6 10.0 20 0.2 0.5
169 stage 2C 1 0 100.0e-6 10.0 20 0.2
170 
171 initialise
172 
173 stage 2a 1 0 100.0e-6 10.0 20 0.2 0.5
174 stage 2c 1 0 100.0e-6 10.0 20 0.2
175 stage 3a 1 0 50.0e-6 10.0 20 0.2 0.5
176 stage 3c 1 0 50.0e-6 10.0 20 0.2
177 EOF
178 
179 JSydney.sh $DETECTOR $INPUT_FILES[*] script.txt
180 
181 if [ ! $HOMEDIR -ef $WORKDIR ]; then
182  cp -vru * $HOMEDIR
183 fi
then fatal No hydrophone data file $HYDROPHONE_TXT fi sort gr k
Q(UTCMax_s-UTCMin_s)-livetime_s
$WORKDIR stage
then JLigier sh continue fi cat
Definition: JDAQDriver.sh:51
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O SUMMARY JPrintDAQHeader f $INPUT_FILE read A DAQ_HEADER set_variable DETECTOR_ID
Definition: JSquid.sh:28
o $QUALITY_ROOT d $DEBUG!CHECK_EXIT_CODE JPlot1D f
Definition: JDataQuality.sh:76
exit
Definition: JPizza.sh:36
then fatal Number of tripods
Definition: JFootprint.sh:45
then usage $script< detector specific pre-calibration script >< option > nAuxiliary script to make scan of pre stretching of detector strings(see JEditDetector)." "\nPossible options
data_type r[M+1]
Definition: JPolint.hh:868
&set_variable RUNS
Definition: datalogs.sh:21
then
Definition: datalogs.sh:31
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable TRIPOD $argv[2] set_array INPUT_FILES $argv[3,-1] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O CAN JAcoustics sh $DETECTOR_ID
Definition: footprint.sh:38
then fatal Wrong number of arguments fi DIR
then fatal Wrong number of arguments fi JConvertDetectorFormat a o
do JCanberra a $DETECTOR f $INPUT_FILE o $WORKDIR canberra[${EMITTER}\] root T $WORKDIR tripod txt V $WORKDIR sound_velocity txt M $WORKDIR mechanics txt H $WORKDIR hydrophone txt E $EMITTER $DISABLE d $DEBUG!done kill_child_processes_at_exit attach getModule a $DETECTOR typeset Z STRING typeset Z FLOOR for STRING in $STRINGS[*]
Definition: JCanberra.sh:70
static const double C
Physics constants.
then fatal Missing detector file $DETECTOR fi eval JPrintDetector a $DETECTOR O IDENTIFIER for KEY in tripod hydrophone transmitter
do JPrintDAQHeader f $INPUT_FILE d read DETECTOR_ID RUN FRAME_INDEX TIMESLICE_START set_variable OUTPUT_FILE $WORKDIR KM3NeT_
then fatal Detector file should be binary format fi eval JPrintDetector a $DETECTOR O IDENTIFIER typeset a INPUT_FILES expand_array RUNS for RUN in $RUNS[*]
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable
Definition: JAcoustics.sh:21
then JCalibrateToT a
Definition: JTuneHV.sh:113
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR set_variable DEBUG set_variable WORKDIR if do_usage *then usage for INPUT_FILE in $INPUT_FILES[*]
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DEBUG set_variable WORKDIR
Definition: JLegolas.sh:20
* usage
then fatal Timeout at user input fi set_variable SERVER JServerDB wget no check certificate q https
Definition: JCookie.sh:58
do sput $STRING $FLOOR sget MODULE INPUT_FILES
Definition: JCanberra.sh:79
$WORKDIR ev_configure_dqsimulator txt echo process $DQ_SIMULATOR $i $SOURCE_HOST[$index] csh c(setenv ROOTSYS $ROOTSYS &&source $JPP_DIR/setenv.csh $JPP_DIR &&($DQ_SIMULATOR\-u\$NAME\$\-H\$SERVER\$\-M\$LOGGER\$\-d $DEBUG</dev/null > &/dev/null &))'
fi set_variable FILENAME $WORKDIR
Definition: datalogs.sh:34
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY JAcoustics sh $DETECTOR_ID source JAcousticsToolkit sh CHECK_EXIT_CODE typeset A EMITTERS get_tripods $WORKDIR tripod txt EMITTERS get_transmitters $WORKDIR transmitter txt EMITTERS for EMITTER in
Definition: JCanberra.sh:48
then set_variable MODULE getModule a $DETECTOR L $STRING $FLOOR JEditDetector a $DETECTOR M $MODULE add $X o $DETECTOR else echo No update of detector $DETECTOR
then error Missing CDF files error Run
Definition: JSirene.sh:58
then cp
set_variable DETECTOR
do set_variable DETECTOR_TXT $WORKDIR detector
then echo
Definition: JQAQC.sh:90
then usage $script[user directory] nThe user directory should be specified when this script is submitted in a batch queue fi set_variable WORKDIR pwd set_variable HOMEDIR $WORKDIR case set_variable HOMEDIR
source $JPP_DIR setenv csh $JPP_DIR &dev null eval JShellParser o a A
script
Definition: JAcoustics.sh:2
do echo Generating $dir eval D
Definition: JDrawLED.sh:53
then fatal Invalid tripod $TRIPOD
esac $JPP_BIN JLogger sh $LOGGER until pgrep JGetMessage</dev/null > dev null