Variables
	script

then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DETECTOR_ID set_array RUNS	set_variable

then usage $script< source directory >[user directory] nThe source directory corresponds to a pre calibrated D0ARCA009 detector nThe user directory should be specified when this script is submitted in a batch queue fi set_variable WORKDIR pwd set_variable HOMEDIR $WORKDIR case set_variable	HOMEDIR

&set_variable	DIR {1:a}

*fatal Wrong number of arguments esac	if [[!-d $WORKDIR/post-calibration]]

then cat $TRIPOD_INITIAL << EOF7+587198.628+4016228.693-3433.3068+588257.896+4017034.442-3457.2409+587646.419+4017109.956-3456.98010+587763.722+4017253.398-3453.89412+587600.000+4017500.000-3457.24013+587510.740+4016869.160-3451.700EOFfiJEditDetector-a $DETECTOR-r"19"-o detector_tmp.datxeval`JPrintDetector-a $DETECTOR_INITIAL-O SUMMARY`;FINAL_STRINGS=($STRINGS[]) eval`JPrintDetector-a detector_tmp.datx-O SUMMARY`;FIXED_STRINGS=($STRINGS[]) if[[!-f detector.datx]];then JEditDetector-a $DETECTOR_INITIAL-s"-1 mul $MUL"-o detector.datx eval`JPrintDetector-a detector.datx-O SUMMARY`for STRING in ${STRINGS[]};do set_variable MODULE`getModule-a detector.datx-L"$STRING 0"`JEditDetector-a detector.datx-M"$MODULE setz -11.7"-o detector.datx--!done JEditDetector-a detector.datx-r"$FIXED_STRINGS[]"-o detector.datx JMergeDetector-a detector.datx-a detector_tmp.datx-o detector.datx JEditDetector-a detector.datx-k"$FINAL_STRINGS[]"-o detector.datxfisource JAcousticsToolkit.shtypeset-A TRIPODSget_tripods $TRIPOD_INITIAL TRIPODS;FINAL_TRIPODS=(${(k) TRIPODS[]}) get_tripods $TRIPOD TRIPODS;FIXED_TRIPODS=(${(k) TRIPODS[]}) if[[!-f tripod.txt]];then cp-p $TRIPOD_INITIAL tripod.txt JEditTripod-f tripod.txt-r"${FIXED_TRIPODS}"-o tripod.txt JMergeTripod-f tripod.txt-f $TRIPOD-o tripod.txt JEditTripod-f tripod.txt-k"${FINAL_TRIPODS}"-o tripod.txtfiset_variable DETECTOR detector.datxset_variable TRIPOD tripod.txtecho Fixed strings:$FIXED_STRINGS[]echo Fixed tripods:$FIXED_TRIPODS[]JAcoustics.sh $DETECTOR_IDcat > acoustics_trigger_parameters txt<< EOFQ=0.0;TMax_s=0.020;numberOfHits=200;EOFJAcousticsEventBuilder.sh $DETECTOR $RUNS[]INPUT_FILES=(`ls KM3NeT_ ${(l:8::0::0:) DETECTOR_ID}_0 ${^RUNS}_event.root`) cd $WORKDIRsource $JPP_DIR/examples/JAcoustics/acoustics-fit-toolkit.shif[!$HOMEDIR-ef $WORKDIR];then cp-p $HOMEDIR/$DETECTOR $WORKDIR cp-p $HOMEDIR/${^ACOUSTICS_KEYS}.txt $WORKDIR cp-p $HOMEDIR/${^INPUT_FILES}$WORKDIRfitimer_startinitialisefixStrings $FIXED_STRINGS[]fixTripods $FIXED_TRIPODS[*]stage_0 0 2 250.0e-6 10.0 0.5 20 > &stage	log

backup	$HOMEDIR