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pre-calibration_00000116.sh
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1 #!/bin/zsh
2 script=${0##*/}
3 
4 # --------------------------------------------------------------------------------------------
5 #
6 # Steering script for the global-fit-of-global-fits procedure of the D0ARCA020 (116) detector.
7 #
8 # --------------------------------------------------------------------------------------------
9 
10 if [ -z $JPP_DIR ]; then
11  echo "Variable JPP_DIR undefined."
12  exit
13 fi
14 
15 source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null
16 
18 set_array RUNS 12785-12792
19 set_variable MUL -1.21e-2
20 
21 if do_usage $*; then
22  usage "$script <detector file> <tripod file> [user directory]"\
23  "\nThe user directory should be specified when this script is submitted in a batch queue."\
24  "\nThe detector file and tripod file correspond to a pre-calibrated D0ARCA009 detector."
25 fi
26 
29 
30 case $# in
31  3) set_variable HOMEDIR $3;&
34  *) fatal "Wrong number of arguments."
35 esac
36 
37 set_variable TRIPOD_INITIAL tripod_initial.txt
38 set_variable DETECTOR_INITIAL detector_initial.datx
39 expand_array RUNS
40 
41 
42 # Run in HOMEDIR
43 
44 mkdir -p $HOMEDIR
45 
46 cd $HOMEDIR
47 
48 if [[ ! -f $DETECTOR_INITIAL ]]; then
49  JDetectorDB \
50  -D $DETECTOR_ID \
51  -r $RUNS[1] \
52  -V "" \
53  -WW \
54  -o $DETECTOR_INITIAL
55 fi
56 
57 if [[ ! -f $TRIPOD_INITIAL ]]; then
58 
59  cat>$TRIPOD_INITIAL<<EOF
60 # Very preliminary acoustic emitter positions from survey
61 3 +587848.700 +4016749.700 -3450.467
62 7 +587198.628 +4016228.693 -3433.306
63 8 +588257.896 +4017034.442 -3457.240
64 9 +587646.419 +4017109.956 -3456.980
65 10 +587763.722 +4017253.398 -3453.894
66 EOF
67 fi
68 
69 JEditDetector \
70  -a $DETECTOR \
71  -r "19" \
72  -o detector_tmp.datx
73 
74 eval `JPrintDetector -a $DETECTOR_INITIAL -O SUMMARY`; FINAL_STRINGS=($STRINGS[*])
75 eval `JPrintDetector -a detector_tmp.datx -O SUMMARY`; FIXED_STRINGS=($STRINGS[*])
76 
77 if [[ ! -f detector.datx ]]; then
78 
79  # Apply modifications.
80 
81  JEditDetector \
82  -a $DETECTOR_INITIAL \
83  -s "-1 mul $MUL" \
84  -o detector.datx
85 
86  eval `JPrintDetector -a detector.datx -O SUMMARY`
87 
88  for STRING in ${STRINGS[*]}; do
89 
90  set_variable MODULE `getModule -a detector.datx -L "$STRING 0"`
91 
92  JEditDetector \
93  -a detector.datx \
94  -M "$MODULE setz -11.7" \
95  -o detector.datx --!
96  done
97 
98  JEditDetector -a detector.datx -r "$FIXED_STRINGS[*]" -o detector.datx
99  JMergeDetector -a detector.datx -a detector_tmp.datx -o detector.datx
100  JEditDetector -a detector.datx -k "$FINAL_STRINGS[*]" -o detector.datx
101 fi
102 
103 source JAcousticsToolkit.sh
104 
105 typeset -A TRIPODS
106 
107 get_tripods $TRIPOD_INITIAL TRIPODS; FINAL_TRIPODS=(${(k)TRIPODS[*]})
108 get_tripods $TRIPOD TRIPODS; FIXED_TRIPODS=(${(k)TRIPODS[*]})
109 
110 if [[ ! -f tripod.txt ]]; then
111 
112  cp -p $TRIPOD_INITIAL tripod.txt
113 
114  JEditTripod -f tripod.txt -r "${FIXED_TRIPODS}" -o tripod.txt
115  JMergeTripod -f tripod.txt -f $TRIPOD -o tripod.txt
116  JEditTripod -f tripod.txt -k "${FINAL_TRIPODS}" -o tripod.txt
117 fi
118 
120 set_variable TRIPOD tripod.txt
121 
122 echo Fixed strings: $FIXED_STRINGS[*]
123 echo Fixed tripods: $FIXED_TRIPODS[*]
124 
125 JAcoustics.sh $DETECTOR_ID
126 
127 cat>acoustics_trigger_parameters.txt<<EOF
128 Q = 0.0;
129 TMax_s = 0.020;
130 quantile = 0.9;
131 numberOfHits = 200;
132 EOF
133 
134 JAcousticsEventBuilder.sh $DETECTOR $RUNS[*]
135 
136 INPUT_FILES=(`ls KM3NeT_${(l:8::0::0:)DETECTOR_ID}_0*${^RUNS}_event.root`)
137 
138 # Run in WORKDIR
139 
140 cd $WORKDIR
141 
142 if [ ! $HOMEDIR -ef $WORKDIR ]; then
145  cp -p $HOMEDIR/${^INPUT_FILES} $WORKDIR
146  cp -p $HOMEDIR/{acoustics_fit_parameters,acoustics_trigger_parameters,disable,hydrophone,mechanics,sound_velocity,tripod,waveform}.txt $WORKDIR
147 fi
148 
149 source $JPP_DIR/examples/JAcoustics/acoustics-fit-toolkit.sh
150 
152 
153 initialise
154 
155 fixStrings $FIXED_STRINGS[*]
156 fixTripods $FIXED_TRIPODS[*]
157 
158 stage_0 0.5 0 >& stage-0.log; backup $HOMEDIR/0; timer_lap
159 stage_1a 0.5 1.0 20 >& stage-1a.log; backup $HOMEDIR/1a; timer_lap
160 stage_1b 0.3 20 >& stage-1b.log; backup $HOMEDIR/1b; timer_lap
161 stage_2a 0.3 0.6 20 >& stage-2A.log; backup $HOMEDIR/2A; timer_lap
162 stage_2b 0.3 20 >& stage-2B.log; backup $HOMEDIR/2B; timer_lap
163 
164 initialise
165 
166 stage_2a 0.3 0.6 20 >& stage-2a.log; backup $HOMEDIR/2a; timer_lap
167 stage_2b 0.3 20 >& stage-2b.log; backup $HOMEDIR/2b; timer_lap
168 stage_3a 0.2 0.4 20 >& stage-3a.log; backup $HOMEDIR/3a; timer_lap
169 stage_3b 0.2 20 >& stage-3b.log; backup $HOMEDIR/3b; timer_lap
170 
171 if [ ! $HOMEDIR -ef $WORKDIR ]; then
172  cp -vru * $HOMEDIR
173 fi
174 
175 clean
&set_variable TRIPOD
then fatal No hydrophone data file $HYDROPHONE_TXT fi sort gr k
Q(UTCMax_s-UTCMin_s)-livetime_s
$WORKDIR stage
clean eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY set_variable STRING
then JLigier sh continue fi cat
Definition: JDAQDriver.sh:51
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O SUMMARY JPrintDAQHeader f $INPUT_FILE read A DAQ_HEADER set_variable DETECTOR_ID
Definition: JSquid.sh:27
o $QUALITY_ROOT d $DEBUG!JPlot1D f
Definition: JDataQuality.sh:66
exit
Definition: JPizza.sh:36
then fatal Number of tripods
Definition: JFootprint.sh:45
then usage $script< detector specific pre-calibration script >< option > nAuxiliary script to make scan of pre stretching of detector strings(see JEditDetector)." "\nPossible options
data_type r[M+1]
Definition: JPolint.hh:779
V(JDAQEvent-JTriggerReprocessor)*1.0/(JDAQEvent+1.0e-10)
then fatal Wrong number of arguments fi JConvertDetectorFormat a o
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null if do_usage *then usage source $script nToolkit for acoustics scripts fi function get_tripods()
then echo
do JCanberra a $DETECTOR f $INPUT_FILE o $WORKDIR canberra[${EMITTER}\] root T $WORKDIR tripod txt V $WORKDIR sound_velocity txt M $WORKDIR mechanics txt H $WORKDIR hydrophone txt E $EMITTER $DISABLE d $DEBUG!done kill_child_processes_at_exit attach getModule a $DETECTOR typeset Z STRING typeset Z FLOOR for STRING in $STRINGS[*]
Definition: JCanberra.sh:68
then timer_start(JRandomTimesliceWriter-a ${DETECTOR}-o ${PIPE}-n ${NUMBER_OF_SLICES}-P ${PMT_FILE}-d ${DEBUG}-S ${SEED}-B"$BACKGROUND_HZ"-N"$RECYCLING"--!&&for((i=0;$i!=10;++i));do;echo 'EOF' > $PIPE;usleep 100000;done &&rm-f $PIPE)&JTimesliceReprocessor-a $
do JPrintDAQHeader f $INPUT_FILE d read DETECTOR_ID RUN FRAME_INDEX TIMESLICE_START set_variable OUTPUT_FILE $WORKDIR KM3NeT_
then fatal Detector file should be binary format fi eval JPrintDetector a $DETECTOR O IDENTIFIER typeset a INPUT_FILES for RANGE in $RUNS[*]
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable
Definition: JAcoustics.sh:21
case $OPTION in clean clean
do debug $__line__ echo $__line__ read URL DETECTOR RUNS RUNS
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DEBUG set_variable WORKDIR
Definition: JLegolas.sh:20
* usage
do sput $STRING $FLOOR sget MODULE INPUT_FILES
Definition: JCanberra.sh:77
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DETECTOR_ID set_array RUNS set_variable MUL if do_usage *then usage $script< detector file >< tripodfile > nThe user directory should be specified when this script is submitted in a batch queue nThe detector file and tripod file correspond to a pre calibrated D0ARCA006 detector fi set_variable WORKDIR pwd set_variable HOMEDIR $WORKDIR case set_variable HOMEDIR
set_array INPUT_FILES argv[2,$((START_INDEX_STRING-1))] set_array STRINGS
backup $HOMEDIR
then JCalibrateToT a
Definition: JTuneHV.sh:116
then set_variable MODULE getModule a $DETECTOR L $STRING $FLOOR JEditDetector a $DETECTOR M $MODULE add $X o $DETECTOR else echo No update of detector $DETECTOR
then error Missing CDF files error Run
Definition: JSirene.sh:58
then display $WORKDIR
Definition: plot-Domino.sh:128
then cp
set_variable DETECTOR
do set_variable DETECTOR_TXT $WORKDIR detector
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY JAcoustics sh $DETECTOR_ID source JAcousticsToolkit sh CHECK_EXIT_CODE typeset A EMITTERS get_tripods $WORKDIR tripod txt EMITTERS get_transmitters $WORKDIR transmitter txt EMITTERS for EMITTER in
Definition: JCanberra.sh:46
source $JPP_DIR setenv csh $JPP_DIR &dev null eval JShellParser o a A
script
Definition: JAcoustics.sh:2
do echo Generating $dir eval D
Definition: JDrawLED.sh:53
then fatal Invalid tripod $TRIPOD
esac $JPP_BIN JLogger sh $LOGGER until pgrep JGetMessage</dev/null > dev null
const JModule & getModule(const JDetector &detector, const JModuleLocation &location)
find module with a given string and floor number
esac done
Definition: JAddHDE.sh:21