pre-calibration_D0ARCA028.sh

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#!/bin/zsh
script=${0##*/}

# --------------------------------------------------------------------------------------------
#
# Steering script for the global-fit-of-global-fits procedure of the D0ARCA028 (160) detector.
#
# --------------------------------------------------------------------------------------------

if [ -z $JPP_DIR ]; then
    echo "Variable JPP_DIR undefined."
    exit
fi

source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null

set_variable  DETECTOR_ID            160
set_array     RUNS                   18826-18833
set_variable: MUL                    ACOUSTICS_MUL          -1.21e-2
set_variable: THREADS                ACOUSTICS_THREADS       5
set_variable  SINGULARITY            -
set_variable  WORKDIR                `pwd`
set_variable  HOMEDIR                $WORKDIR

if do_usage $*; then
    usage "$script <source directory> [user directory]"\
          "\nThe source directory corresponds to a pre-calibrated D0ARCA021 detector."\
          "\nThe user directory should be specified when this script is submitted in a batch queue."
fi

case $# in
    2)  set_variable HOMEDIR              $2;&
    1)  set_variable DIR                  ${1:a};;
    *)  fatal "Wrong number of arguments."
esac

source JAcousticsToolkit.sh


# post-calibration of input detector

mkdir -p $WORKDIR/post-calibration
pushd    $WORKDIR/post-calibration

post-calibration_D0ARCA021.sh  $DIR

popd

set_variable  DETECTOR               $WORKDIR/post-calibration/detector.datx
set_variable  TRIPOD                 $WORKDIR/post-calibration/tripod.txt
set_variable  DETECTOR_INITIAL       detector_initial.datx
expand_array  RUNS


# Run in HOMEDIR

mkdir -p $HOMEDIR
cd       $HOMEDIR

JDetectorDB \
    -D $DETECTOR_ID       \
    -r $RUNS[1]           \
    -V ""                 \
    -WW                   \
    -o $DETECTOR_INITIAL

JEditDetector \
    -a $DETECTOR           \
    -r "14 15"             \
    -o detector_tmp.datx --!

eval `JPrintDetector -a $DETECTOR_INITIAL -O SUMMARY`;  FINAL_STRINGS=($STRINGS[*])
eval `JPrintDetector -a detector_tmp.datx -O SUMMARY`;  FIXED_STRINGS=($STRINGS[*])

# Apply modifications.

JEditDetector \
    -a $DETECTOR_INITIAL     \
    -s "-1 mul $MUL"         \
    -o detector.datx --!

eval `JPrintDetector -a detector.datx -O SUMMARY`

for STRING in ${STRINGS[*]}; do

    set_variable  MODULE  `getModule -a detector.datx -L "$STRING 0"`

    JEditDetector \
        -a detector.datx         \
        -M "$MODULE setz -11.7"  \
        -o detector.datx --!
done

JEditDetector   -a detector.datx  -r "$FIXED_STRINGS[*]"  -o detector.datx --!
JMergeDetector  -a detector.datx  -a detector_tmp.datx    -o detector.datx --!

JEditTripod                         \
    -f $TRIPOD                      \
    -r "12"                         \
    -o tripod.txt

cat>acoustics_trigger_parameters.txt<<EOF
Q             = 0.0;
TMax_s        = 0.020;
numberOfHits  = 400;
EOF

cat>disable.txt<<EOF
# disable transmissions
# $9136f45a-c2f3-450e-b450-ba8ea4497983$
# GIT 18.3.0-306-g8309c53d6-D
# ROOT 6.30/02
# application JEditDisable
# command /data1/dejong/km3net/GIT/Jpp/out//Linux/bin//JEditDisable -f disable.log -o disable.log -a detector.datx -q -d 2 --!
# namespace KM3NET
# system Linux verster.lorentz.leidenuniv.nl 6.6.8-200.fc39.x86_64 #1 SMP PREEMPT_DYNAMIC Thu Dec 21 04:01:49 UTC 2023 x86_64
2 808964925
3 808430571
3 808474602
3 808964925
3 808971936
3 808978646
3 808981369
4 808474602
4 808964925
7 806476519
7 806649098
7 808430571
7 808480499
7 808974928
7 808974966
7 808975010
7 808976351
7 808985071
7 816919166
7 816943531
7 817595446
7 817606460
7 819737799
8 806649098
8 808430571
8 808469556
8 808491794
8 808944706
8 808964757
8 808964845
8 808972687
8 808974966
8 808980070
8 808984610
8 817565754
8 817581876
8 817595516
8 817597135
8 817597212
8 817597230
8 817605775
8 817605786
8 817612559
8 817801419
9 806649098
9 806657372
9 808432849
9 808454978
9 808474602
9 808957378
9 808958576
9 808981206
9 808981369
9 808987098
9 816919071
9 817595373
9 817605768
9 817608140
9 817802210
10 806649098
10 806657372
10 808430036
10 808437870
10 808468365
10 808474602
10 808964876
10 808974966
10 808977563
10 808984610
10 808984662
10 817606460
10 817608135
10 817616429
10 817802231
10 819852785
12 808454978
12 808474243
12 808491794
12 808982550
12 808995481
12 808998966
13 806649098
13 808430036
13 808430571
13 808447081
13 808474243
13 808474602
13 808480499
13 808952499
13 808964925
13 808974966
13 808981369
13 808984662
13 817802231
EOF

cat>transmitter.txt<<EOF
# Data from D0ARCA028_baseAcousticBeacon.csv
11   16  0   0.03  -0.77   0.48
14    5  0   0.74   0.23   0.48
15   32  0  -0.38  -0.67   0.48
16    8  0   0.44   0.63   0.48
17   18  0   0.12   0.76   0.48
EOF

cat>hydrophone.txt<<EOF
# Data from D0ARCA028_hydrophones.csv
   9 -1  -0.57  -0.42   0.57
  10  0  -0.67   0.39   0.62
  11  0  -0.67   0.39   0.62
  13  0  -0.68  -0.37   0.62
  14  0  -0.20  -0.75   0.62
  12  0  -0.12   0.76   0.62
  15  0  -0.72  -0.27   0.62
  19  0  -0.16  -0.76   0.62
  16  0   0.07   0.77   0.62
  20  0   0.09  -0.77   0.62
  23  0  -0.59  -0.49   0.62
  24  0  -0.68  -0.37   0.62
  21  0  -0.46   0.62   0.62
  22  0  -0.26   0.73   0.62
  25  0  -0.74  -0.22   0.62
  30  0  -0.08  -0.77   0.62
  26  0  -0.06   0.77   0.62
  27  0  -0.21   0.74   0.62
  28  0   0.12   0.76   0.62
  32  0   0.47   0.62   0.62
   5  0  -0.76  -0.13   0.62
   1  0  -0.20  -0.75   0.62
   3  0   0.12  -0.76   0.62
   4  0   0.62  -0.46   0.62
   8  0  -0.52  -0.57   0.62
  14  0  -0.20  -0.75   0.62
  15  0  -0.75  -0.20   0.62
  17  0   0.08   0.77   0.62
  18  0  -0.22  -0.74   0.62
  31  0   0.71   0.31   0.62
EOF

JAcousticsEventBuilder.sh  detector.datx  $RUNS[*]

INPUT_FILES=(`ls KM3NeT_${(l:8::0::0:)DETECTOR_ID}_0*${^RUNS}_event.root`)


# Run in WORKDIR

cd  $WORKDIR

if [ ! $HOMEDIR -ef $WORKDIR ]; then
    cp -p $HOMEDIR/$ACOUSTICS_DETECTOR     $WORKDIR
    cp -p $HOMEDIR/${^ACOUSTICS_KEYS}.txt  $WORKDIR
    cp -p $HOMEDIR/${^ACOUSTICS_AUXS}.txt  $WORKDIR
    cp -p $HOMEDIR/${^INPUT_FILES}         $WORKDIR
fi

cat>script.txt<<EOF

fix  string  $FIXED_STRINGS[*]
fix  tripod  $FIXED_TRIPODS[*]

stage  1A  0                2  250.0e-6  10.0  20  0.5    0.5
stage  1B  0                2  250.0e-6  10.0   0  0.0005 0.2
stage  1C  ${SINGULARITY}2  0  250.0e-6  10.0  20  0.3       
stage  2A  ${SINGULARITY}2  0  100.0e-6  10.0  20  0.2    0.2
stage  2C  ${SINGULARITY}2  0  100.0e-6  10.0  20  0.2       

initialise

stage  2a  ${SINGULARITY}2  0  100.0e-6  10.0  20  0.2    0.2
stage  2c  ${SINGULARITY}2  0  100.0e-6  10.0  20  0.2       
stage  3a  ${SINGULARITY}2  0   50.0e-6  10.0  20  0.2    0.2
stage  3c  ${SINGULARITY}2  0   50.0e-6  10.0  20  0.2       
EOF

JSydney.sh  detector.datx  $INPUT_FILES[*]  script.txt

if [ ! $HOMEDIR -ef $WORKDIR ]; then
    cp -vru * $HOMEDIR
fi