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pre-calibration_D1ORCA015.sh
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1 #!/bin/zsh
2 script=${0##*/}
3 
4 # --------------------------------------------------------------------------------------------
5 #
6 # Steering script for the global-fit-of-global-fits procedure of the D1ORCA015 (146) detector.
7 # It is assumed that this script is using the D0ORCA015 detector as the input detector.
8 #
9 # --------------------------------------------------------------------------------------------
10 
11 if [ -z $JPP_DIR ]; then
12  echo "Variable JPP_DIR undefined."
13  exit
14 fi
15 
16 source $JPP_DIR/setenv.sh $JPP_DIR >& /dev/null
17 
18 set_variable DETECTOR_ID 146
19 set_array RUNS 16386 16387 16388 16389 16390 16391 16392
20 set_variable: THREADS ACOUSTICS_THREADS 5
21 set_variable SINGULARITY -
22 set_variable WORKDIR `pwd`
23 set_variable HOMEDIR $WORKDIR
24 
25 if do_usage $*; then
26  usage "$script <source directory> [user directory]"\
27  "\nThe source directory corresponds to a pre-calibrated D0ORCA015 detector."\
28  "\nThe user directory should be specified when this script is submitted in a batch queue."
29 fi
30 
31 case $# in
32  2) set_variable HOMEDIR $2;&
33  1) set_variable DIR ${1:a};;
34  *) fatal "Wrong number of arguments."
35 esac
36 
37 source JAcousticsToolkit.sh
38 
39 set_variable DETECTOR $DIR/detector.datx
40 set_variable TRIPOD $DIR/tripod.txt
41 set_variable TRIPOD_INITIAL tripod_initial.txt
42 expand_array RUNS
43 
44 
45 # Run in HOMEDIR
46 
47 mkdir -p $HOMEDIR
48 cd $HOMEDIR
49 
50 cat>$TRIPOD_INITIAL<<EOF
51 # position of emitter 5 taken from https://elog.km3net.de/Operations+FR/8271 (RAB1v2)
52 # position of emitter 6 taken from https://elog.km3net.de/Operations+FR/8731 (RAB2)
53 # position of emitter 8 taken from https://elog.km3net.de/Operations+FR/9603 (RAB3)
54 5 +257040.800 +4743317.600 -2439.900
55 6 +256807.500 +4743636.500 -2442.500
56 8 +257118.100 +4743781.100 -2440.300
57 EOF
58 
59 # Apply modifications.
60 
61 JEditDetector \
62  -a $DETECTOR \
63  -@ "id=$DETECTOR_ID" \
64  -o detector.datx
65 
66 eval `JPrintDetector -a detector.datx -O SUMMARY`; FIXED_STRINGS=($STRINGS[*])
67 
68 typeset -A TRIPODS
69 
70 get_tripods $TRIPOD_INITIAL TRIPODS; FINAL_TRIPODS=(${(k)TRIPODS[*]})
71 get_tripods $TRIPOD TRIPODS; FIXED_TRIPODS=(${(k)TRIPODS[*]})
72 
73 cp -p $TRIPOD_INITIAL tripod.txt
74 
75 JEditTripod -f tripod.txt -r "${FIXED_TRIPODS}" -o tripod.txt
76 JMergeTripod -f tripod.txt -f $TRIPOD -o tripod.txt
77 JEditTripod -f tripod.txt -k "${FINAL_TRIPODS}" -o tripod.txt
78 
79 cat>acoustics_trigger_parameters.txt<<EOF
80 Q = 0.0;
81 TMax_s = 0.015;
82 numberOfHits = 200;
83 EOF
84 
85 cat>disable.txt<<EOF
86 # disable transmissions
87 # $d5e8c53d-faa9-4d6a-937d-eb5a3389d457$
88 # GIT 18.3.0-305-g4e82b04f4-D
89 # ROOT 6.30/02
90 # application JEditDisable
91 # command /data1/dejong/km3net/GIT/Jpp/out//Linux/bin//JEditDisable -f disable.log -o disable.log -a detector.datx -q -d 2 --!
92 # namespace KM3NET
93 # system Linux verster.lorentz.leidenuniv.nl 6.6.8-200.fc39.x86_64 #1 SMP PREEMPT_DYNAMIC Thu Dec 21 04:01:49 UTC 2023 x86_64
94 1 809521500
95 2 808472260
96 2 808966194
97 2 808977319
98 3 808966194
99 3 813553576
100 5 806487231
101 5 808978694
102 6 817329086
103 8 806487231
104 EOF
105 
106 TRIPOD=(tripod)
107 
108 cp -p $DIR/${^ACOUSTICS_AUXS:|TRIPOD}.txt .
109 
110 JAcousticsEventBuilder.sh detector.datx $RUNS[*]
111 
112 INPUT_FILES=(`ls KM3NeT_${(l:8::0::0:)DETECTOR_ID}_0*${^RUNS}_event.root`)
113 
114 
115 # Run in WORKDIR
116 
117 cd $WORKDIR
118 
119 if [ ! $HOMEDIR -ef $WORKDIR ]; then
120  cp -p $HOMEDIR/$ACOUSTICS_DETECTOR $WORKDIR
121  cp -p $HOMEDIR/${^ACOUSTICS_KEYS}.txt $WORKDIR
122  cp -p $HOMEDIR/${^ACOUSTICS_AUXS}.txt $WORKDIR
123  cp -p $HOMEDIR/${^INPUT_FILES} $WORKDIR
124 fi
125 
126 cat>script.txt<<EOF
127 
128 fix string $FIXED_STRINGS[*]
129 fix tripod $FIXED_TRIPODS[*]
130 
131 stage 0 ${SINGULARITY}1 0 100.0e-6 10.0 10 0.5
132 
133 initialise
134 
135 stage 2a ${SINGULARITY}1 0 100.0e-6 10.0 20 0.2 0.5
136 stage 2c ${SINGULARITY}1 0 100.0e-6 10.0 20 0.2
137 stage 3a ${SINGULARITY}1 0 50.0e-6 10.0 20 0.2 0.5
138 stage 3c ${SINGULARITY}1 0 50.0e-6 10.0 20 0.2
139 EOF
140 
141 JSydney.sh detector.datx $INPUT_FILES[*] script.txt
142 
143 if [ ! $HOMEDIR -ef $WORKDIR ]; then
144  cp -vru * $HOMEDIR
145 fi
SUMMARY
*fatal Wrong number of arguments esac source JAcousticsToolkit sh mkdir p $WORKDIR post calibration pushd $WORKDIR post calibration post calibration_D0ARCA021 sh $DIR popd set_variable DETECTOR $WORKDIR post calibration detector datx set_variable TRIPOD $WORKDIR post calibration tripod txt set_variable DETECTOR_INITIAL detector_initial datx expand_array RUNS mkdir p $HOMEDIR cd $HOMEDIR JDetectorDB D $DETECTOR_ID r $RUNS[1] V WW o $DETECTOR_INITIAL JEditDetector a $DETECTOR r o detector_tmp datx!eval JPrintDetector a $DETECTOR_INITIAL O SUMMARY
Definition: pre-calibration_D0ARCA028.sh:33
k
then fatal No hydrophone data file $HYDROPHONE_TXT fi sort gr k
Definition: hydrophone-phi:fit.sh:35
Q
Q(UTCMax_s-UTCMin_s)-livetime_s
$STRINGS
then usage eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY JAcoustics sh $DETECTOR_ID JCanberra sh $DETECTOR $INPUT_FILES[*] $WORKDIR canberra[%\] root source JAcousticsToolkit sh CHECK_EXIT_CODE typeset A EMITTERS get_tripods $WORKDIR tripod txt EMITTERS get_transmitters $WORKDIR transmitter txt EMITTERS kill_child_processes_at_exit attach getModule a $DETECTOR typeset Z STRING typeset Z FLOOR for STRING in $STRINGS[*]
Definition: software/JAcoustics/plot-canberra.sh:58
cat
then JLigier sh continue fi cat
Definition: JDAQDriver.sh:51
HOMEDIR
then usage $script[user directory] nThe user directory should be specified when this script is submitted in a batch queue fi case set_variable HOMEDIR
Definition: pre-calibration_D0ARCA006.sh:31
DETECTOR_ID
then fatal Wrong number of arguments fi set_variable DETECTOR $argv[1] set_variable INPUT_FILE $argv[2] eval JPrintDetector a $DETECTOR O SUMMARY JPrintDAQHeader f $INPUT_FILE read A DAQ_HEADER set_variable DETECTOR_ID
Definition: JSquid.sh:28
f
o $QUALITY_ROOT d $DEBUG!CHECK_EXIT_CODE JPlot1D f
Definition: JDataQuality.sh:76
exit
exit
Definition: JPizza.sh:36
JTOOLS::r
data_type r[M+1]
Definition: JPolint.hh:868
then
then
Definition: datalogs.sh:34
DIR
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DETECTOR_ID set_array RUNS if do_usage *then usage $script< source directory > nThe source directory corresponds to a pre calibrated D0ARCA009 detector fi case set_variable DIR
Definition: post-calibration_D0ARCA009.sh:20
o
then fatal Wrong number of arguments fi JConvertDetectorFormat a o
Definition: software/JDetector/compare-detector.sh:31
RUNS
then fatal Missing detector file $DETECTOR fi eval JPrintDetector a $DETECTOR O IDENTIFIER RUNS
Definition: archive-put-calibration.sh:38
$TRIPOD
then $DIR JKatoomba a $DETECTOR o $WORKDIR katoomba root T $TRIPOD
Definition: examples/JAcoustics/JKatoomba.sh:60
a
then JCalibrateToT a
Definition: JTuneHV.sh:107
$INPUT_FILES
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR set_variable DEBUG set_variable WORKDIR if do_usage *then usage for INPUT_FILE in $INPUT_FILES[*]
Definition: JCheckTriggerParameters.sh:31
set_variable
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable
Definition: archive-get-calibration.sh:14
WORKDIR
then echo Variable JPP_DIR undefined exit fi source $JPP_DIR setenv sh $JPP_DIR &dev null set_variable DEBUG set_variable WORKDIR
Definition: JLegolas.sh:20
usage
* usage
Definition: JLigier-local.sh:34
https
then fatal Timeout at user input fi set_variable SERVER JServerDB wget no check certificate q https
Definition: JCookie.sh:58
c
$WORKDIR ev_configure_dqsimulator txt echo process $DQ_SIMULATOR $i $SOURCE_HOST[$index] csh c(setenv ROOTSYS $ROOTSYS &&source $JPP_DIR/setenv.csh $JPP_DIR &&($DQ_SIMULATOR\-u\$NAME\$\-H\$SERVER\$\-M\$LOGGER\$\-d $DEBUG</dev/null > &/dev/null &))'
KM3NeT_
do set_variable INPUT_FILE $WORKDIR KM3NeT_
Definition: JAcousticsTriggerProcessor.sh:56
in
then fatal The output file must have the wildcard in the e g root fi eval JPrintDetector a $DETECTOR O IDENTIFIER eval JPrintDetector a $DETECTOR O SUMMARY JAcoustics sh $DETECTOR_ID source JAcousticsToolkit sh CHECK_EXIT_CODE typeset A EMITTERS get_tripods $WORKDIR tripod txt EMITTERS get_transmitters $WORKDIR transmitter txt EMITTERS for EMITTER in
Definition: JCanberra.sh:48
$DETECTOR
then set_variable MODULE getModule a $DETECTOR L $STRING $FLOOR JEditDetector a $DETECTOR M $MODULE add $X o $DETECTOR else echo No update of detector $DETECTOR
Definition: module-Z:fit.sh:118
Run
then error Missing CDF files error Run
Definition: JSirene.sh:59
INPUT_FILES
do sput $STRING $FLOOR sget MODULE INPUT_FILES
Definition: software/JAcoustics/plot-canberra.sh:67
stage
*fatal Wrong number of arguments esac for INPUT_FILE in eval ls rt $DIR stage
Definition: plot-acoustics-fit.sh:31
cp
then cp
Definition: darkroomCalibration.sh:41
$RUNS
then fatal Abort fi fi done for RUN in $RUNS[*]
Definition: JAcousticsTriggerProcessor.sh:54
FIXED_STRINGS
FIXED_STRINGS
Definition: pre-calibration_D0ARCA028.sh:73
DETECTOR
set_variable DETECTOR
Definition: JARCACalibrateMuon.sh:31
detector
do set_variable DETECTOR_TXT $WORKDIR detector
Definition: detector-XY:fit1d.sh:38
echo
then echo
Definition: JQAQC.sh:92
A
source $JPP_DIR setenv csh $JPP_DIR &dev null eval JShellParser o a A
Definition: JShellParser.csh:15
$WORKDIR
then getFile sh $JPP_ARCHIVE $DETECTOR_ID $RUNS[1] $KEY $VERSION $WORKDIR
Definition: JAcousticsTriggerProcessor.sh:46
null
esac $JPP_BIN JLogger sh $LOGGER until pgrep JGetMessage</dev/null > dev null
Definition: examples/JLogger/JLogger.sh:33
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