File List

Here is a list of all files with brief descriptions:

[detail level 12345]

▼ examples
► JAAnet
event_selector.cc
JAAnet.cc	Example program to analyse track fit results from Evt formatted data
JAAnet.sh
JAAnetDynamics.cc	Example program to monitor dynamical calibration of Evt formatted data
JAAnetDynamics.sh
JABCnet.cc	Example program to read Monte Carlo events
JAtmosphericNeutrinoFlux.cc	Example program for printing the oscillated atmospheric neutrino fluxes for the events in a given neutrino MC-file
JDST.cc	Example program to select events from DST files
JEvD.cc	Program to display hit probabilities
JEvD.sh
JFluxMap.cc	Example program for scanning event-weights of Monte Carlo files using specifiable flux functions
JHondaFluxInterpolator.cc	Example program for plotting the atmospheric neutrino fluxes given by an azimuth-averaged Honda flux table and comparing them with the atmospheric neutrino flux from the KM3NeT flux library
JMultiHead.cc	Example program to add MultiHead
JPlotEvtWeightFactorMeffRatio.cc	Example program for plotting effective mass ratios
JPrintAAnet.cc	Example program to print track fit results from Evt formatted data
JSortEvt.cc	Example program for sorting and merging Monte-Carlo files with compatible headers
JSortEvt.sh
JSplitEvt.cc	Application for splitting an offline file in two parts, one containing all even-numbered events, another containing all odd-numbered events
► JAcoustics
acoustics-diff.sh
acoustics-Zmul.sh
acoustics.sh
archive-input_data.sh
billabong-random:plot.sh
billabong-random:run.sh
billabong-signal:plot.sh
billabong-signal:run.sh
billabong.sh
billabong:run.sh
detector-XY:fit.sh
detector-XY:fit1d.sh
detector-XY:plot.sh
detector-XY:run.sh
detector-Zmul+zoom:fit.sh
detector-Zmul+zoom:run.sh
detector-Zmul:fit.sh
detector-Zmul:plot.sh
detector-Zmul:run.sh
footprint-TxTy:plot.sh
footprint-TxTy:run.sh
footprint.sh
getMIIseacurrent.sh
hydrophone-phi:fit.sh
hydrophone-phi:plot.sh
hydrophone-phi:run.sh
hydrophone-t0:fit.sh
hydrophone-t0:plot.sh
hydrophone-t0:run.sh
hydrophone-XY:fit.sh
hydrophone-XY:plot.sh
hydrophone-XY:run.sh
hydrophone-Z:fit.sh
hydrophone-Z:plot.sh
hydrophone-Z:run.sh
input-files.sh
JAcousticsEventMonitor.cc	Example program to monitor acoustic events
JAcousticsEventMonitor.sh
JAcousticsEventReader.cc	Example program to process DAQ and acoustic events
JAcousticsMonitor.cc	Example program to monitor acoustic events
JAcousticsMonitor.sh
JAcousticsMonitorRateSummary.cc	Example program to monitor acoustic events rate per emitter and receiver and run
JAcousticsMonitorRateSummary.sh
JAcousticsMonitorRateSummaryPeriod.sh
JAcousticsMonitorRateTest.cc
JAcousticsTriggerMonitor.cc	Example program to monitor acoustic events
JAcousticsTriggerMonitor.sh
JAlignDetector.sh
JAttenuationLength.cc	Auxiliary program to plot attenuation length
JAttenuationLength.sh
JBellhop.cc	Example program for sound ray tracing
JBellhop.sh
JBillabong.cc	Main program to trigger acoustic data
JCompareKatoomba.sh
JCreep.cc	Auxialiry program to determine average creep of strings
JCreep.sh
JDisable.cc	Auxiliary program to disable acoustic sensors based on acoustic events
JEvD.cc	Program to display hit probabilities
JEvD.sh
JGeometry.cc
JGeometry.sh
JHydrophone.cc	Example program to plot hydrophone data
JHydrophone.sh
JKatoomba.cc	Example application to test fit of model to simulated acoustic data
JKatoomba.sh
JMechanics.cc	Auxiliary application to fit mechanical constants
JMechanics.sh
JParramatta.sh
JPrintAcousticsEvent.cc	Example application to print acoustics event
JPrintAttenuationLength.cc	Auxiliary program to print attenuation length
JPrintChi2.cc	Auxiliary program to print chi2/NDF of acoustic events
JRandomToAWriter.cc	Auxiliary program to write random acoustic data
JSeabed.cc	Auxiliary application to determine tilt angles of seabed based on tripod positions
JSignalToAWriter.cc	Auxiliary program to write signal acoustic data
JToA.cc	Example program to test acoustic data
JToA.sh
JToAMonitor.cc	Example program to monitor acoustic events
JToAshortMonitor.sh
mechanics:plot.sh
mechanics:run.sh
module-Z:fit.sh
module-Z:plot.sh
module-Z:run.sh
plot-acoustics-fit.sh
plot-canberra.sh
plot-katoomba.sh
plot-waveforms.sh
pre-calibration.sh
sound-V:fit.sh
sound-V:run.sh
sound-velocity.sh
toashort_monitor.sh
tripod-XY:fit.sh
tripod-XY:plot.sh
tripod-XY:run.sh
tripod-Z:fit.sh
tripod-Z:plot.sh
tripod-Z:run.sh
UNESCO.cc	Example program to plot UNESCO sound velocity
UNESCO.sh
► JAstronomy
JRate.cc	Example program to plot event rates using JASTRONOMY::JStarTrek
JRate.sh
► JCalibrate
darkroomCalibration.sh
JCalibrateHeight.sh
JCalibrateK40-PMT.sh
JCalibrateK40.sh
JCalibrateNB.cc
JCalibrateOrientation.sh
JCalibratePosition.sh
JCalibrateTime.sh
JCalibrateToT.sh
JCheckK40.cc	Auxiliary program to check t0's
JCheckK40.sh
JCombinatoricsK40.cc	Auxiliary program to project single PMT data from 2D histogram
JCompress.sh
JEqualizer.cc	Example program to equalize QE of PMTs based on summary data
JEqualizer.sh
JFitL1dt.cc	Auxiliary program to find the detector time offsets from FitL1dtSlices output
JFitL1dt.sh
JFitL1dtSlices.cc	Auxiliary program to fit L1dt output data to an L1dt model, both created with JMonitorL1dt
JFitNB.cc
JFrodo.sh
JHobbit.sh
JHVInterpolator.cc	Example program to interpolate input high-voltage-gain data
JMatrix_sol.cc	Auxiliary program to determine best inter-DU time offsets from hit time correlations
JMergeNB.cc
JMonitorL1dt.cc	Auxiliary program to plot L1 time difference correlations between DOMs
JNanobeacon.hh
JOffset_extract.cc	Auxiliary program to extract string-string correlation information from the output created with JMonitorL1dt
JOMGsim.cc	Auxiliary program to determine PMT parameters from OMGSim data
JOMGsim.sh
JPlotK40.cc	Auxiliary plot fit function of JFitK40.cc
JPlotK40.sh
JPMTStatus.sh
JPrintPMTThreshold.cc	Auxiliary program to print PMT thresholds
JPulsar.sh
JRemovePMT.cc	Example program to remove PMT(s) from data (and set corresponding rate to 0)
JSTDevK40.cc
JSTDevK40.sh
multi-plotk40.sh
plot-equalizer.sh
plot-height.sh
plot-hobbit.sh
plot-orientation.sh
plot-position.sh
plot-time.sh
seaTimeCalibration.sh
SN_timecalib.sh
testk40.sh
testToT.sh
thresholdCalibration.sh
► JCompareHistograms
JPlotZebraMantis.cc	Auxiliary application to plot Run by Run comparisons
► JCompass
JAHRSMonitor.cc	Program to monitor AHRS data
JAHRSMonitor.sh
JNOAA.cc	Example program to plot NOAA functions
JNOAA.sh
JPolicy.cc	Example program to test policy method for missing module data
JRose.cc	Example program to plot compass fit results
JRose.sh
JTwist.cc
JTwist.sh
plot-compass.sh
► JDAQ
Jaws.cc	Example program to search for spurious hits
JDAQEvaluator.cc	Program to print DAQ value used for sorting entries in ROOT TTree
JDAQEvent.cc	Example program to analyse KM3NETDAQ::JDAQEvent
JDAQEvent.sh
JDAQFilter.cc	Example program to select events based on hits in strings
JDAQHitRouter.cc	Example program to histogram string and floor hits
JDAQHitRouter.sh
JDAQModuleRouter.cc	Example program to histogram string and floor rates
JDAQProfile.cc	Example program to histogram various data profiles
JDAQProfile.sh
JDAQSnapshot.cc	Program to plot snapshot data
JDAQStatus.cc	Example program to histogram KM3NETDAQ::JDAQSummaryslice
JDAQSummaryslice.cc	Example program to histogram KM3NETDAQ::JDAQSummaryslice
JDAQSummaryslice.sh
JDAQTimeslice.cc	Example program to histogram KM3NETDAQ::JDAQTimeslice
JDAQTimeslice.sh
JDAQTimesliceSelector.cc	Example program to histogram KM3NETDAQ::JDAQTimeslice
JDAQTimesliceSelector.sh
JHighRateVeto.cc	Example program to print high-rate veto related quantities
JMonopole.cc	Example program to analyse summary data
JPrintLargestOverlay.cc	Example program to find the largest event in a file
JUTCProfile.cc	Example program to histogram UTC profiles
JUTCProfile.sh
► JDataFilter
JDataFilter.sh
► JDataQuality
JOperationsRunMonitor.sh
JOperationsRunQuality.sh
JSquid.sh
qaqc.sh
► JDataWriter
JDataWriter.sh
► JDB
getModuleID.cc	Auxiliary program to print module identifier for a given module location
JAHRSMonitor.cc	Program to plot AHRS data
JAHRSMonitor.sh
JCheckDetectorIntegration.cc	Auxiliary program to check detector integration
JCheckHV.cc	Auxiliary program to check HV
JCheckHV.sh
JCLBID.cc	Example program for module identification
JCompass.cc	Example program to monitor AHRS data of the first floor and check offsets vs detector file
JCompass.sh
JConvertDB.sh
JDetectorIntegration.cc	Example program to build detector from database
JMonitorHV.sh
JPlotPMTParameters.cc	Auxiliary application to plot PMT parameters as a function of variant
JPMTHV.cc	Utility program to print PMT HV settings
JPMTThreshold.cc	Auxiliary program to print run setup parameters from the database
JPrintRunsetup.cc	Auxiliary program to print run setup data
JPrintRunsetup.sh
JPrintTDC.sh
JPrintTriggerParameters.cc	Auxiliary program to print trigger parameters
JRunCalibration.sh
JRunrange.sh
JRuns.sh
JRunsetups.sh
JTDC.sh
JToAshortMonitor.cc	Example program to monitor "toashort" data
JToAshortMonitor.sh
plot-BPS.sh
plot-EDFA.sh
plot-PMTParameters.sh
test-tuna.sh
tridas.sh
► JDetector
getModule.sh
JCharge.cc	Example program to histogram charge distributions
JCharge.sh
JChargeProbability.cc	Example program to histogram charge probability distributions
JChargeProbability.sh
JCompass.cc	Example compass operations
JConvertDetectorFormat.sh
JModule.cc	Example for determination of center of optical module
JModuleAddressMap.cc	Example program to print PMT logical addressing
JModuleMapper.cc	Example program to test JDETECTOR::JModuleMapper
JModuleMapper.sh
JModuleStatusBits.cc	Example program to test module status bits
JPlotDetectorParameters2D.cc	Auxiliary application to plot detector parameters
JPlotPMTParameters.cc	Auxiliary application to plot PMT parameters
JPlotPMTParameters2D.cc	Auxiliary application to plot PMT parameters
JPMTAngularAcceptance.cc
JPMTAngularAcceptance.sh
JPMTParametersMap.cc	Example program to create PMT parameters map
JPMTRouter.cc	Example program to determine speed of JDETECTOR::JPMTRouter
JPMTRouter.sh
JPMTSignalProcessor.cc	Example program to test PMT signal processor probability
JPMTSimulator.cc	Example program to histogram PMT simulator features
JPMTSimulator.sh
JPMTStatusBits.cc	Example program to test PMT status bits
JPrintDetector.sh
JReconstructDetector.sh
JSlewing.cc	Example program to histogram time over threshold as a function of number of photo-electrons
JSlewing.sh
JToT.cc	Example program to histogram time over threshold distributions
JToT.sh
JToTProbability.cc	Example program to histogram time-over-threshold probability distributions
JToTProbability.sh
JTransitTime.cc	Example program to histogram PMT transit time distribution
JTransitTime.sh
JTransitTime2D.cc	Example program to histogram PMT 2D transit-time distribution
JTransitTime2D.sh
JTransitTimeGenerator.cc	Example program to test generation of transit times using PMT simulator
JTransitTimeGenerator.sh
JTransitTimeProbablity.cc	Example program to determine PMT transit time probability
JTTS.cc	Auxiliary program to model transition time distribution generator from data
JTTS.sh
plot-DetectorParameters2D.sh
plot-PMTParameters.sh
plot-PMTParameters1D.sh
plot-PMTParameters2D.sh
test-PMTParameters.sh
► JDynamics
JBallarat.cc	Example program to plot orientation data
JCompareDynamicPositions.cc
JCompareDynamics.sh
JConvertEvt.cc	Auxiliary program to convert trigger files to Evt format
JNarrabri.cc	Example program to check contents of acoustic events
JNarrabri.sh
JPrintDynamics.cc	Example program to print dynamic detector calibration
JSpark.cc	Example program to check for sparks
JSpark.sh
plot-Ballarat.sh
► Jeep
JComment.cc	Example program to test file name handling using JEEP::JComment
Jeep.cc	Example program to test file name handling using Jeep/JeepToolkit.hh
JParser-string.cc	Example program to test JPARSER::JParser
JParser-string.sh
JParser.cc	Example program to test JPARSER::JParser
JParser.csh
JParser.sh
JPrint.cc	Example program to test print auxiliaries
JProperties-sed.cc	Example program to test JPROPERTIES::JProperties class
JProperties-setValue.cc	Example program to test JPROPERTIES::JProperties class
JProperties.cc	Example program to test JPROPERTIES::JProperties class
JProperties.sh
JScale.cc	Example program to test JEEP::JScale_t enumeration
JShellParser.csh
JShellParser.sh
JTimekeeper.cc	Example program to test JEEP::JTimekeeper class
► JFFT
JFFT.sh
JSpectrum.cc	Auxiliary program to generate spectrum for fast Fourier transformation
► JFit
JGandalfFitAlaMinuitToGauss.cc	Program to test JFIT::JGandalf algorithm
JGandalfFitToGauss.cc	Program to test JFIT::JGandalf algorithm
JGandalfFitToGauss.sh
JGradientFitToGauss.cc	Program to test JFIT::JGradient algorithm
JLegendre.cc	Example program to test Legendre polynome
JLine1Z.cc	Test program for JFIT::JEstimator<JLine1Z> fit
JMEstimator.cc	Example program to plot various M-Estimators
JMEstimator.sh
JPoint3D.cc	Test program for JFIT::JEstimator<JPoint3D> fit
JPoint4D.cc	Test program for JFIT::JEstimator<JPoint4D> fit
JRootFitToGauss.cc	Program to test ROOT fit
JRootFitToGauss.sh
JSimplexFitArray.cc	Program to test JFIT::JSimplex algorithm
JSimplexFitToGauss.cc	Program to test JFIT::JSimplex algorithm
JSimplexFitToGauss.sh
► JGeometry2D
JConvexHull2D.cc	Example program to test convex hull and enclosing circle
JEigenValues2D.cc	Example program to print eigen values in 2D
JEigenValues2D.sh
JGetSmallestDistance2D.cc	Example program to find smallest distance between two points
JOmega2D.cc	Example program to test JGEOMETRY2D::JOmega2D class
JOmega2D.sh
► JGeometry3D
JCylinder3D.cc	Example program to test intersection of straight line with cylinder
JEigenValues3D.cc	Example program to print eigen values in 3D
JEigenValues3D.sh
JGeometry3D.cc	Example program to test rotations in 3D
JGetSmallestDistance3D.cc	Example program to find smallest distance between two points
JLegendre.cc	Example program to test Legendre polynome
JOmega3D.cc	Example program to test JGEOMETRY3D::JOmega3D class
JOmega3D.sh
JPolyline3D.cc	Example program for the JGEOMETRY::JPolyline3D class
JTrack3D.cc	Example program to test angle of incidence of a photon from a muon on a PMT
► JGizmo
JCSVPlot.sh
JDependencies.cc	Example program to test dependencies of include files
JDependencies.sh
JDrawDetector1D.sh
JF1.sh
JF2.sh
JGizmo.sh
JGraph.sh
JGraph2D.sh
JHistogram1D.cc	Program to create TH1D and fill according given formula
JHistogram1D.sh
JHistogram2D.cc	Program to create TH2D and fill according given formula
JHistogram2D.sh
JHistogram3D.cc	Program to create TH2D and fill according given formula
JHistogram3D.sh
JPrintRootVersion.sh
JRegurgitate.sh
JSummary.sh
JSummaryWriter.sh
► JIO
JByteArrayIO.cc	Example program to test JIO::JByteArrayReader and JIO::JByteArrayWriter
► JLang
JAbstractClass.cc	Example program to test JLANG::JAbstractClass class
JAllocator.cc	Auxiliary program to test speed of JLANG::JObjectAllocator class
JBaseClass.cc	Example program to test JLANG::JBaseClass class
JBool.cc	Example program to test JLANG::JBool class
JClass.cc	Example program to test JLANG::JClass class
JClonable.cc	Example program to test JLANG::JClonable class
JColor.cc	Example program to test JLANG::JColor class
JComparable.cc	Example program to test JLANG::JComparable class
JComparator.cc	Auxiliary program to test JLANG::JComparator class and helper methods
JComparisonAvailable.cc	Example program to test JLANG::JComparisonAvailable and JLANG::JComparable classes
JConstructor.cc	Example program to test JLANG::JConstructor class
JConversion.cc	Example program to test JLANG::JConversion class
JCppFacet.cc
JCRC.cc	Example program to test CRC evaluation (see JCRC.hh)
JCSV.cc	Example program to test assignment of comma separated values (see JCSV.hh)
JEnumeration.cc	Example program to test JLANG::JEnumeration class
JEquals.cc	Example program to test JLANG::JComparible class
JEquation.cc	Example program to test JLANG::JEquation class
JEquation.sh
JFileStream.cc	Example program to test JLANG::JFileStream class
JFind_if.cc	Auxiliary program to test JLANG::JPredicate class and helper methods
JGroup.cc	Example program to test JLANG::JGroup class
JManip.cc	Example program to test I/O manipulators
JMultiComparable.cc	Example program to test JLANG::JComparible class
JMultiEquals.cc	Example program to test JLANG::JMultiEquals class
JMultiPointer.cc	Example program to test JLANG::JMultiPointer class
JMutex.cc
JNullStream.cc	Example program to test JANG::JFileSream and JLANG::JNullStream classes
JObject.cc	Example program to test JLANG::JObject class
JObjectDemultiplexer.cc	Example program to test JLANG::JObjectMultiplexer and JLANG::JObjectDemultiplexer classes
JObjectIterator.cc	Example program to test JLANG::JObjectIterator class
JObjectOutput.cc	Example program to test JLANG::JObjectOutput class
JObjectReader.cc	Example program to test JLANG::JObjectReader class
JObjectReader.sh
JObjectWriter.cc	Example program to test JLANG::JObjectWriter class
JPipe.cc	Example program to test JLANG::JPipe class
JPredicate.cc	Auxiliary program to test JLANG::JPredicate class and helper methods
JPrintHelper.cc	Example program to test JLANG::JPrintHelper class
JRedirectStream.cc	Example program to test JLANG::JRedirectStream class
JRedirectString.cc	Example program to test JLANG::JRedirectString class
JReference.cc	Example program to test JLANG::JReference class
JResolve.cc	Test of class JLANG::JResolve
JSetize.cc	Example program to test JLANG::make_set method
JSharedPointer.cc	Example program to test JLANG::JSharedPointer class
JSinglePointer.cc	Example program to test JLANG::JSinglePointer class
JSingleton.cc	Example program to test JLANG::JSingleton class
JSize.cc	Example program to test JLANG::getSize method
JStatic.cc	Example program to test JLANG::JStatic class
JSTDObjectReader.cc	Example program to test JLANG::JSTDObjectReader class
JSTDObjectWriter.cc	Example program to test JLANG::JSTDObjectWriter class
JStorage.cc	Example program to test JLANG::JStorage class
JStreamAvailable.cc	Example program to test JLANG::JStreamAvailable class
JString.cc	Example program to test JLANG::JString class
JTemplate.cc	Example program to test JLANG::JTemplate class
JTemplateIO.cc	Example program to test JLANG::JTemplateReader and JLANG::JTemplateWriter classes
JToken.cc	Example program to test JLANG::JToken class
JToken.sh
JTypedef.cc	Example program to test JLANG::JTypedef class
JTypeList.cc	Example program to test JLANG::JTypeList class
JUUID.cc	Example program to test UUID
JVectorize.cc	Example program to test JLANG::make_array method
JWhiteSpacesFacet.cc	Example program to test JLANG::JWhiteSpacesFacet class
JWhiteSpacesFacet.sh
► JLogger
JLogger.sh
JMessageLogger.cc	Example program to test message logging
JMessageScheduler.cc	Example program to test message scheduling
► JMarkov
JMarkovPathDisplayer.cc
JMarkovPathGenerator.cc
JMarkovPathIntegrator.cc
JMarkovPathReader.cc
JMarkovPathSelecter.cc
JPhotonPathIO.cc
► JMath
getPoisson.cc	Auxiliary program to print random a number according Poisson statistics or the Poisson probability
JLegendre.cc	Example program to test Legendre polynome
JLimits.cc	Example program to test zero values (JMATH::zero)
JMath.cc	Example program to test user class with arithmetic capabilities (based on class JMATH::JMath)
JMathSupportkit.cc	Test application of consistency between ROOT and C++ or Jpp functions
JMatrix1S.cc	Example program to test inversion of symmetric matrix
JMatrix2S.cc	Example program to test inversion of symmetric matrix
JMatrix3S.cc	Example program to test inversion of symmetric matrix
JMatrix4S.cc	Example program to test inversion of symmetric matrix
JMatrix5S.cc	Example program to test inversion of symmetric matrix
JMatrixND.cc	Example program to test matrix operations
JMatrixNS.cc	Example program to test inversion of symmetric matrix
JPolynome.cc	Example program to test polynome
JSVD3D.cc
JZero.cc	Example program to test zero values (JMATH::zero)
► JMonitor
JAnglerFish.cc	Example application to search for sets of consecutive hits on a given PMT, that are separated in time by a constant value
JAnglerFish.sh
JClusterBuilder.cc	Example program to demonstrate the usage of JClusterBuilder
JHalibut.cc	Example program to determine N-fold coincidence rates
JSlewingK40.sh
► JNanobeacon
JDarkroomNB.cc
► JNet
getTag.cc	Program to test JTagAvailable
JControlHost.cc	Example program to test JNET::JControlHost
JControlHostObjectIterator.cc	Example program to test JNET::JControlHostObjectIterator
JControlHostSSHTunnel.sh
JDistributer.cc	Example program to distribute data through control host
JLigierObjectIterator.cc	Example program to test JNET::JLigierObjectIterator
JSubscription.cc	Example program to test JNET::JSubscription
JWhereIs.cc	Example program to test JNET::JControlHost::WhereIs
► JOscProb
JPlotOscillogram.cc	Example program to plot oscillogram
JPrintOscProb.cc	Example program to print oscillation probabilities interpolated in energy and zenith-angle
JWriteOscParametersGrid.cc
► JPhysics
JAddHDE.sh
JAddPDF.sh
JAddPDG.sh
JDeltaRays.cc	Program to determine the energy loss due to visible delta-rays
JDeltaRays.sh
JDIS.cc
JDIS.sh
JDrawLED.cc	Example program to draw PDF from LED beacon
JDrawLED.sh
JDrawP5D.sh
JDrawPD0.sh
JDrawPDF.sh
JDrawPDG.sh
JEarth.cc	Mickey-mouse program to propagate neutrinos through the Earth
JEarth.sh
JEMShower.cc	Auxiliary program to draw npe as a function of EM-energy
JEMShower.sh
JGeane.cc	Example program to histogram muon energy loss
JGeane.sh
JGeanx.cc	Example program to histogram photon emission profile from showers using JPHYSICS::JGeanx
JGeanx.sh
JGeanz.cc	Example program to histogram longitudinal shower profile using JPHYSICS::JGeanz
JGeanz.sh
JGinneken.cc
JGinneken.sh
JHistHDE.sh
JK40Rates.cc	Example program to check background calculation
JMakeHDE.sh
JMakeHDF.sh
JMultiplicityK40.cc	Example program to calculate multiples rate
JMultiplicityK40.sh
JMultiPMT.cc	Auxiliary program to determine L0 and L1 hit probability as a function of
JMultiPMT.sh
JNeutrino.cc	Example program to histogram neutrino interaction cross sections
JNeutrino.sh
JPlotCDF.sh
JPlotCDG.sh
JPlotNPE-PDG.cc	Program to compare integrals of PDF of Cherenkov light from EM-shower using interpolation tables
JPlotNPE-PDG.sh
JPlotNPE.sh
JPlotNPE1D.cc	Program to plot PDF of Cherenkov light from EM-shower using interpolation tables
JPlotNPE1D.sh
JPlotP5D.sh
JPlotPD0.sh
JPlotPDF.sh
JPlotPDF_L1.cc
JPlotPDF_L1.sh
JPlotPDG.sh
JPrintK40Rates.sh
JPrintPDE.cc	Program to print PDF of Cherenkov light from elongated EM-shower
JPrintPDF.sh
JPrintPDG.sh
JRadiation.cc	Example program to histogram radiation cross sections, shower energy, range and b(E) as a function of the muon energy
JRadiation.sh
JRadiation2D.cc	Example program to histogram shower energy as a function of the muon energy
JRadiation2D.sh
JRateK40.cc	Example program to calculate singles rate
JShadowPDF.sh
JShowerNPE.cc	Program to plot PDF of Cherenkov light from EM-shower using interpolation tables
JShowerNPE.sh
JThetaMCS.cc
JThetaMCS.sh
► JReconstruction
compare-detector.sh
event_selector.cc
JARCAMuonReconstruction.cc	Program to perform reconstruction of muon trajectory for ARCA detector
JARCAMuonReconstruction.sh
JDAQFilter.cc	Example program to select events based on hits in strings
JEnergyCorrection.cc	Example program to histogram energy corrections
JEnergyCorrection.sh
JEvD.cc	Program to display hit probabilities
JEvD.sh
JFitEfficiency.cc	Example program to histogram fit efficiency
JFitVolume.sh
JHistory.cc	Example program to test application history
JMatrixNZ.cc	Example program to test chi2 calculations based on JFIT::JMatrixNZ
JMatrixNZ.sh
JMuonCompass.cc	Program to fit histogram in output of JMuonCompass.cc
JMuonCompass.sh
JMuonMCEvt.sh
JMuonPath.cc	Program to perform JFIT::JRegressor<JLine3Z,JGandalf> fit with I/O of JFIT::JEvt data
JMuonPath.sh
JMuonPDF.cc	Program to evaluate hit probabilities
JMuonPDF.sh
JMuonStart.cc	Program to test JMuonStart.cc
JMuonStart.sh
JMuonVeto.cc	Program to determine veto of muon trajectory
JORCAMuonReconstruction.cc	Program to perform reconstruction of muon trajectory for ORCA detector
JORCAMuonReconstruction.sh
JORCAReconstruction.cc	Program to perform reconstruction of muon trajectory and shower for ORCA detector
JORCAReconstruction.sh
JORCAShowerReconstruction.cc	Program to perform reconstruction of shower for ORCA detector
JORCAShowerReconstruction.sh
JPerth.sh
JPostfit2F.cc	Example program to compare fit results from two files
JPostfit2F.sh
JSelectEvt.cc	Program to extract events
JShowerMCEvtSmear.cc	Auxiliary program to store Monte Carlo information from a neutrino or the primary electron in JFIT::JEvt format and smear the values of the position and time around a sphere of 4D - length
JShowerNPE.cc	Program to evaluate hit probabilities
JShowerNPE.sh
plot-perth.sh
► JROOT
JClassDef.cc	Program to test JROOT::JClassDef
JManager.cc	Example program to test JGIZMO::JManager class
JRootClass.cc	Program to test JROOT::JRootClass
JRootComparator.cc
JRootFit.cc	Program to test ROOT fit
JRootfitToGauss.cc	Program to test JRootfit algorithm
JRootfitToGauss.sh
JRootfitToGauss2D.cc	Program to test JRootfit algorithm
JRootfitToGauss2D.sh
JRootfitToGauss3D.cc	Program to test JRootfit algorithm
JRootfitToGauss3D.sh
JRootMakeProject.cc
JRootTypewriter.cc
► JRuncontrol
JADF.sh
► JSirene
JCDFTable1D.cc	Program to plot CDF of Cherenkov light from muon using interpolation tables
JCDFTable1D.sh
JCDFTable2D.cc	Program to plot CDF of Cherenkov light from shower using interpolation tables
JCDFTable2D.sh
JDomino.cc	Example program to verify Monte Carlo data
JGedanken.cc	Auxiliary program to generate particles
JGedanken.sh
JLight.cc	Auxiliary program histogram plot absorption and scattering lengths as well as dispersion
JLight.sh
JMonteCarloFileWriter.sh
JNPE.cc	Auxiliary program to print number of photo-electrons
JPMT-PDF.sh
JPMT.cc	Auxiliary program to plot QE and angular acceptance of PMT
JPMT.sh
JPythia.cc	Auxiliary program histogram plot EM-equivalent energy for hadrons
JPythia.sh
JSwordfish.cc	Example program to resize coordinate system of Monte Carlo events
► JSupernova
JGlow.cc	Auxiliary program to test simulation of L0 background
JLightCurveBackgroundGenerator.hh	This file provides a class to emulate a L0 (L1) background on the ms time scale for an arbitrarily sized detector
JRipple.cc
JRipple.hh
► JSupport
JHeadSet.cc	Example program to organise of Monte Carlo run headers
JMeta.cc	Example program to test JSUPPORT::JMeta class
JMultipleFileScanner.cc	Program to test parsing of JSUPPORT::JMultipleFileScanner
JPrintTreeScanner.cc	Program to test ordered reading using JSUPPORT::JTreeScanner
JSampler.cc	Program to test sampling of summary data using the JSUPPORT::JMultipleFileSampler class
JSummaryFileRouter.cc	Program to test JSUPPORT::JSummaryFileRouter
JTreeIterator.cc	Program to test iteration using JSUPPORT::JTreeScanner
JTreeIterator.sh
JTreeRecorder.cc	Program to test ordered reading using JSUPPORT::JTreeRecorder
JTreeScanner.cc	Program to test ordered reading using JSUPPORT::JTreeScanner
JTreeScanner.sh
JTriggeredEventsOnly.cc	Auxiliary program to select number of DAQ events
► JSystem
getShell.cc	Example program to print shell
JDateAndTime.cc	Example program to show system time
JEcho.cc	Auxiliary program to echo (reverted) string
JGlob.cc
JKeypress.cc	Example program to test key board pressings (class JSYSTEM::JKeypress)
JLs.cc	Example program to use JSYSTEM::ls
JMemoryUsage.cc	Example program to show memory usage
JNetwork.cc	Example program to print IP address
JProcess.cc	Example for testing inter-process communication
JProcess.sh
JShell.cc	Example program to test shell I/O (class JSYSTEM::JShell)
JStat.cc	Example program to print status of file
JSysinfo.cc	Example program to print system information
JTime.cc	Example program to show system time
rename.cc	Rename file
► JTimeslice
JRandomTimesliceWriter.cc	Example program to test generation of KM3NETDAQ::JDAQTimeslice with random data
JRandomTimesliceWriter.sh
► JTools
JArray.cc	Example program to test JTOOLS::JArray class
JAutoMap.cc	Example program to test JTOOLS::JAutoMap class
JCollection.cc	Example program to test JTOOLS::JCollection class
JCombinatorics.cc	Example program to test combinatorics of pairs of indices (class JTOOLS::JCombinatorics)
JHashCollection.cc	Example program to test JTOOLS::JHashCollection class
JHashMap.cc	Example program to test JTOOLS::JHashMap class
JHashSet.cc	Example program to test JTOOLS::JHashSet class
JHistogram1D.cc	Example program to test JTOOLS::JHistogram1D
JHistogram1D.sh
JHistogram2D.cc	Example program to test JTOOLS::JMultiHistogram
JHistogram2D.sh
JHistogram3D.cc	Example program to test JTOOLS::JMultiHistogram
JHistogram3D.sh
JMergeSort.cc	Example program to test performance of JTOOLS::JMergeSort
JMultiFunction1D.cc	Example program to create 1D function interpolator from multi-dimensional interpolator
JMultiFunction2D.cc	Example program to create 2D function interpolator from multi-dimensional interpolator
JMultiKey.cc	Example program to test JTOOLS::JMultiKey class
JMultiMap.cc	Example program to test JTOOLS::JMultiMap
JMultiPDF.cc	Example program to test conditional probability density function using JTOOLS::JMultiPDF and JTOOLS::JMultiFunction
JMultiPDF.sh
JPermutation.cc	Example program to test permutations (JTOOLS::next_permutation)
JPermutation.sh
JPolfit1D.cc	Example program to test 1D Legendre interpolation of a polynome
JPolynome1D.cc	Example program to test 1D interpolation of a polynome
JPolynome1D.sh
JPolynome1P.cc	Example program to test 1D interpolation of a polynome
JPolynome3D+2D.cc	Example program to test multi-dimensional interpolation with multi-dimensional function objects
JPolynome3D.cc	Example program to test multi-dimensional interpolation
JPolynome3G.cc	Example program to test multi-dimensional integration
JPolynome3H.cc	Example program to test multi-dimensional interpolation with derivatives
JPolynome5D.cc	Example program to test multi-dimensional interpolation
JQuadrature.cc	Example program to test JTOOLS::JQuadrature
JQuantile.cc	Example program to test JTOOLS::JQuantile calculation
JQuantiles.cc	Example program to test JTOOLS::JQuantiles calculation of a function
JRange.cc	Example program to test JTOOLS::JRange operations
JResultHesse3D.cc	Example program to test multi-dimensional interpolation
JResultPDF.cc	Example program to test interpolations for PDF
JResultPDF.sh
JRouter.cc	Example program to test JTOOLS::JRouter class
JSphere3D.cc	Example program to test 3D integration of sphere
JSphereND.cc	Example program to test integration of sphere in any number of dimensions
JTable2D.cc	Example program to test interpolation between 2D tables
JTransformableFunction.cc	Example program to test transformable function
JTrigonometric1D.cc	Example program to test 1D interpolation of a trigonometric function
JTuple.cc	Example program to test JTOOLS::JTuple class
► JTrigger
JBuild.cc	Example program to test JTRIGGER::JBuildL0, JTRIGGER::JBuildL1 and JTRIGGER::JBuildL2 hit building with DAQ events
JBuild.sh
JChecksum.cc	Example program to histogram string and floor hits
JChecksum.sh
JDAQHit.cc	Example program to count event data
JDAQHitSelector.cc	Example program to test DAQ hit selection using JTRIGGER::JBuildL0
JEffectiveMass1D.cc	Example program to histogram neutrino effective mass for triggered events by counting events inside the can volume
JEffectiveMassOffline1D.cc	Example program to histogram neutrino effective mass for triggered events for offline reconstruction files, using the event weights only
JEffectiveMassOnline1D.cc	Example program to histogram neutrino effective mass for triggered events for online reconstruction files, using the event weights only
JFilter.cc	Example program to test performance of various hit filters based on JTRIGGER::clusterize method
JFilter.sh
JHitL1.cc	Example program to determine time slewing of L1 hits
JHitL1.sh
JMatch.cc	Example program to plot match criterion
JMatch.sh
JPreprocessor.cc	Example program to test JTRIGGER::JPreprocessor
JPreprocessor.sh
JRandomL1.cc	Example program to test JTRIGGER::JBuildL1 and JTRIGGER::JBuildL2 hit coincidence building with random data
JRandomL1.sh
JSignalL1.cc	Example program to test JTRIGGER::JBuildL1 and JTRIGGER::JBuildL2 hit coincidence building with Monte Carlo events
JSignalL1.sh
JSimbad.cc	Example program to simulate summary data
JTestL1.cc	Example program to test JTRIGGER::JBuildL1 and JTRIGGER::JBuildL2 hit coincidence building with user data
JTimeConverter.cc	Example program to test conversion between Monte Carlo and DAQ times
JTimeConverter.sh
JTimesliceReprocessor.sh
JTriggerEfficiency1D.cc	Example program to histogram trigger efficiency
JTriggerEfficiency1D.sh
JTriggerEfficiency2D.cc	Example program to histogram trigger efficiency
JTriggerEfficiencyRunByRun.sh
JTriggerMask.cc	Example program to test I/O of trigger mask
JTriggerParameters.cc	Example program to read trigger parameters
JTriggerProcessor.sh
JTriggerProfiler.sh
JTriggerReprocessor.sh
JTurbot.sh
JTurbot2D.cc	Example program to search for out of sync shifts around integral timeslices evolving over time
JTurbot2D.sh
JTurbotIter.cc	Example program to search for correlations between triggered events and timeslice data
JTurbotIter.sh
JVolume1D.cc	Example program to histogram neutrino effective volume for triggered events
JVolume1D.sh
► scripts
archive-put-pmt.sh
archive-put-wiki-detectors.sh
cmake.sh
gradient.sh
main.sh
mkqueue.sh
▼ externals
► antares-dataformat
Ars.cc
Ars.hh
DataTypes.hh
EventPreamble.hh
FramePreamble.hh
LinkDef.hh
PhysicsEvent.cc
PhysicsEvent.hh
TimeSlice.cc
TimeSlice.hh
Timestamp.hh
ulonglong.hh
► km3net-dataformat
► definitions
► csv2code
csv2code.cc
csv2code.hh
csv2cpp.cc
csv2cpp.hh
csv2julia.cc
csv2julia.hh
csv2python.cc
csv2python.hh
csv2shell.cc
csv2shell.hh
applications.hh
applications.py
applications.sh
daqdatatypes.hh
daqdatatypes.py
daqdatatypes.sh
fitparameters.hh
fitparameters.py
fitparameters.sh
module_status.hh
module_status.py
module_status.sh
pmt_status.hh
pmt_status.py
pmt_status.sh
reconstruction.hh
reconstruction.py
reconstruction.sh
root.hh
root.py
root.sh
trigger.hh
trigger.py
trigger.sh
trkmembers.hh
trkmembers.py
trkmembers.sh
w2list_genhen.hh
w2list_genhen.py
w2list_genhen.sh
w2list_gseagen.hh
w2list_gseagen.py
w2list_gseagen.sh
w2list_km3buu.hh
w2list_km3buu.py
w2list_km3buu.sh
weightlist.hh
weightlist.py
weightlist.sh
► examples
► cpp
readEvtFile.cc
setenv.sh
► offline
AAObject.hh
Evt.hh
Exception.hh
Head.hh
Hit.hh
io_ascii.hh
io_online.hh
MultiHead.hh
Trk.hh
Vec.hh
► online
JDAQ.hh	KM3NeT DAQ constants, bit handling, etc
JDAQAbstractPreamble.hh
JDAQChronometer.hh
JDAQClock.hh
JDAQDataTypes.hh
JDAQEvent.hh
JDAQEventHeader.hh
JDAQException.hh
JDAQFrame.hh
JDAQFrameStatus.hh
JDAQHeader.hh
JDAQHit.hh
JDAQKeyHit.hh
JDAQModuleIdentifier.hh
JDAQPMTIdentifier.hh
JDAQPreamble.hh
JDAQPrint.hh
JDAQRoot.hh
JDAQSummaryFrame.hh
JDAQSummaryslice.hh
JDAQSummarysliceHeader.hh
JDAQSuperFrame.hh
JDAQSuperFrameHeader.hh
JDAQTimeslice.hh
JDAQTimesliceHeader.hh
JDAQTriggerCounter.hh
JDAQTriggeredHit.hh
JDAQTriggerMask.hh
JDAQUTCExtended.hh
► scripts
create_update_issues.py
► src
Evt.cc
Head.cc
io.cc
JDAQ.cc
JDAQAbstractPreamble.cc
JDAQEvent.cc
JDAQHit.cc
JDAQKeyHit.cc
JDAQModuleIdentifier.cc
JDAQPMTIdentifier.cc
JDAQPreamble.cc
JDAQSummaryFrame.cc
JDAQTimeslice.cc
JDAQTriggeredHit.cc
LinkDef.hh
MultiHead.cc
► tests
test_head.py
► tools
multiplicity.hh
reconstruction.hh	Auxiliary methods for selection of reconstructed tracks
time_converter.hh	Auxiliary include file for time conversion between DAQ/trigger hit and Monte Carlo hit
► ulib
getArchive.sh
getFile.sh
getLs.sh
putFile.sh
sftpget.zsh
sftpput.zsh
ulib.csh
ulib.sh
out
▼ software
► AcousticDataFilter
► src
► Config
parser.cc
parser.h
parser.t.cc
► Definitions
Audio_Structures.h
► Main
Main.cc
► toalib
km3_toa_finder.cc
km3_toa_signal.cc
km3_toa_toainfo.cc
km3_toa_utils.cc
► Tools
KM3NeT_Acoustic_Link.cc
KM3NeT_Acoustic_Link.h
KM3NeT_Audio_Channel.cc
KM3NeT_Audio_Channel.h
KM3NeT_Audio_Data.cc
KM3NeT_Audio_Data.h
KM3NeT_Debug.cc
KM3NeT_Debug.h
KM3NeT_DOM.cc
KM3NeT_DOM.h
AcousticDataFilter.cc
AcousticDataFilter.h
► DataQueue
► benchmark
time_tracking.hh
► Buffers
clb_datagram.cc
clb_datagram.hh
► CLBInterface
data_input_interface.hh
input_channel_handler.hh
► DataFormats
clb_common_header.hh
daq_common_header.hh
infoword.hh
utctime.hh
► DFInterface
DFInterface.cc
DFInterface.hh
recipient.hh
recipients_handler.cc
recipients_handler.hh
► external
► dq_dump_file
dqdumpfile.hh
► FrameFactory
dump_file.hh
frame.hh
frame_farm.cc
frame_farm.hh
input_buffer_collector.hh
ptr_dispatcher.hh
puzzled_frame.cc
puzzled_frame.hh
timer.cc
timer.hh
► simu
► CLB
clb_simu.cpp
frame_generator.cc
frame_generator.hh
► util
► clb_replay
clb_replay.cpp
► clb_swiss_knife
clb_swiss_knife.cpp
datatypes.cpp
dom_map.cpp
gui.cpp
ligier_helper.cpp
print.cpp
► daq_parser
daq_parser.cpp
► raw_data_converter
raw_data_converter.cpp
configure.hh
DataQueue.cc
datatypespec.hh
debug_abrt.hh
jlog.cc
log.cc
log.hh
saDataQueue.cc
► Elog
crypt.cc
elog-version.h
elog.cc
elogd.h
git-revision.h
regex.h
strlcpy.cc
strlcpy.h
► JAAnet
JAAnetPreprocessor.cc	Auxiliary program to preprocess an aanet file
JAAnetTestkit.hh
JAAnetToolkit.hh	Definition of hit and track types and auxiliary methods for handling Monte Carlo data
JAtmosphericNeutrinoFlux.hh
JConstantFlux.hh
JDiffuseFlux.hh
JDiffuseFluxHelper.hh
JDK.cc	Example program to filter out-of-time hits in Evt data
JEvtCategory.hh
JEvtCategoryHelper.hh
JEvtCategoryMap.hh
JEvtCategoryToolkit.hh
JEvtEvaluator.hh
JEvtReweight.cc	Program for reweighting Monte-Carlo simulations
JEvtWeight.hh
JEvtWeightCorsika.hh
JEvtWeightDAQ.hh
JEvtWeightFactor.hh
JEvtWeightFactorConstant.hh
JEvtWeightFactorFunction.hh
JEvtWeightFactorGSeaGen.hh
JEvtWeightFactorHelper.hh
JEvtWeightFactorMeffRatio.hh
JEvtWeightFactorMupage.hh
JEvtWeightFactorProduct.hh
JEvtWeightFactorTFormula.hh
JEvtWeightGenhen.hh
JEvtWeightGSeaGen.hh
JEvtWeightHelper.hh
JEvtWeightInterface.hh
JEvtWeightKM3BUU.hh
JEvtWeightMiscellaneous.hh
JEvtWeightMupage.hh
JEvtWeightSupportkit.hh
JEvtWeightToolkit.cc
JEvtWeightToolkit.hh
JFixedCan.cc	Auxiliary program to shift the generated tracks according a given offset
JFlux.hh
JFluxHelper.hh
JGenerator.cc	Basic event generator
JGENIETypes.hh	Definition of GENIE neutrino interaction types
JHead.cc
JHead.hh
JHeadToolkit.hh
JHeadWriter.hh
JHondaFluxInterpolator.hh
JLorentzBoost.hh	Auxiliary methods for calculating Lorentz boosts
JMergeEvt.cc	Application for merging Monte-Carlo files
JMultiHead.hh
JMuonBundleCategory.hh	Classes and methods for defining muon bundle categories
JNeutrinoInteractionCategory.hh	Classes and methods for defining neutrino interaction categories
JOscFlux.hh
JParticleTypes.hh	Definition of particle types
JPDB.hh
JPowerLawFlux.hh
JPrintPDB.cc	Auxiliary program to print particle codes and masses
JSupport.hh	ROOT TTree parameter settings
JVolume.hh
LinkDef.hh
► JAcoustics
archive-get-calibration.sh
archive-put-calibration.sh
JAbstractSoundVelocity.hh	Abstract sound velocity
JAcoustics.sh
JAcousticsDisable.cc
JAcousticsDisable.sh
JAcousticsEventBuilder.cc	Main program to trigger events in acoustic data
JAcousticsEventBuilder.sh
JAcousticsSupportkit.hh	Acoustics support kit
JAcousticsToolkit.hh	Acoustics toolkit
JAcousticsToolkit.sh
JAcousticsTriggerProcessor.cc	Main program to trigger acoustic data
JAcousticsTriggerProcessor.sh
JCanberra.cc	Example program to plot acoustic fit results
JCanberra.sh
JCompareKatoomba.cc	Example program to compare acoustic fit results
JConstantSoundVelocity.hh
JConvertAcoustics.cc	Auxiliary program to convert acoustic events
JConvertAcoustics.sh
JCounter.hh	Acoustic counter
JCreep.cc	Auxialiry program to determine average creep of strings
JDiffAcousticsEvent.cc	Program to compare acoustics event data
JDiffAcousticsEvt.cc	Program to compare acoustics fit data
JDiffToA.cc	Program to compare toa data
JEditDisable.cc
JEditHydrophone.cc	Auxiliary program to modify hydrophone configuration
JEditMechanics.cc	Auxiliary program to add or modify mechanical model data of detector string
JEditTransmitter.cc	Auxiliary program to modify transmitter configuration
JEditTripod.cc	Auxiliary program to modify tripod configuration
JEKey.hh	Emitter hash key
JEmitter.hh	Acoustic emitter
JEmitterID.hh	Emitter identification
JEvent.hh	Acoustic event
JEventOverlap.hh
JEvt.hh	Acoustic event fit
JEvtToolkit.hh	Acoustic event fit toolkit
JFitParameters.cc
JFitParameters.hh	Acoustic fit parameters
JFootprint.cc	Auxiliary application to determine tilt angles of seabed based on measured tilt angles
JFootprint.sh
JFremantle.cc	Application to make a global fit of the detector geometry to acoustic data
JFremantle.sh
JFremantle_t.cc
JFremantle_t.hh
JGeometry.hh	Acoustic geometries
JGlobalfit.hh	Fit function of acoustic model
JHit.hh	Acoustic hit
JKatoomba.cc	Application to make a global fit of the detector geometry to acoustic data
JKatoomba.sh
JKatoomba_t.cc
JKatoomba_t.hh	Fit functions of acoustic model
JMechanics.hh	Mechanical modelling of string
JMergeDisable.cc
JMergeHydrophone.cc	Auxiliary program to merge hydrophone files
JMergeTransmitter.cc	Auxiliary program to merge transmitter files
JMergeTripod.cc	Auxiliary program to merge tripod files
JModel.cc
JModel.hh	Model for fit to acoutsics data
JParramatta.cc	Example program to plot acoustic fit results
JPlatypus.cc	Application to make a global fit of the detector geometry to acoustic data
JPlatypus.sh
JPlatypus_t.cc
JPlatypus_t.hh
JPrintHydrophone.cc	Auxiliary program to print hydrophone configuration
JPrintMechanics.cc	Auxiliary program to print mechanical constants
JReceiver.hh	Acoustic receiver
JSeabed.cc	Auxiliary application to apply tilt angles to seabed
JSoundVelocity.hh	Sound velocity
JSuperEvt.hh	Acoustic event fit
JSuperEvtToolkit.hh	Acoustic super event fit toolkit
JSupport.hh	ROOT TTree parameter settings
JSydney.cc	Application to perform acoustic pre-calibration
JSydney.sh
JTimeRange.hh
JToA.cc	Auxiliary program to convert acoustics data from data base into ROOT format
JToA.hh	Acoustic event
JToA.sh
JToAImp.cc
JTransceiver.hh	Acoustic transceiver
JTransmission.hh	Acoustic transmission
JTransmission_t.hh	Acoustic transmission identifier
JTriggerOutput.hh
JTriggerParameters.cc
JTriggerParameters.hh	Acoustic trigger parameters
JUNESCO.hh	Sound velocity according UNESCO equation
LinkDef.hh
plot-canberra.sh
post-calibration_D0ARCA009.sh
post-calibration_D0ARCA021.sh
pre-calibration_D0ARCA006.sh
pre-calibration_D0ARCA009.sh
pre-calibration_D0ARCA020.sh
pre-calibration_D0ARCA021.sh
pre-calibration_D0ARCA028.sh
pre-calibration_D0ARCA030.sh
pre-calibration_D0ARCW003.sh
pre-calibration_D0ORCA007.sh
pre-calibration_D0ORCA010.sh
pre-calibration_D0ORCA011.sh
pre-calibration_D0ORCA015.sh
pre-calibration_D0ORCA018.sh
pre-calibration_D1ORCA011.sh
pre-calibration_D1ORCA013.sh
pre-calibration_D1ORCA015.sh
pre-calibration_D1ORCA024.sh
pre-calibration_D_ORCA006.sh
pre-calibration_DAORCA018.sh
pre-calibration_DBORCA018.sh
► JAntares
JSupport.hh	ROOT TTree parameter settings
► JAstronomy
JAstronomy.hh	Interface methods for slalib and auxiliary classes and methods for astronomy
JAstronomyToolkit.hh
► JCalibrate
JARCACalibrateMuon.sh
JCalibrateK40.cc	Auxiliary program to determine PMT parameters from K40 data
JCalibrateK40.hh
JCalibrateMuon.cc	Program to perform detector calibration using reconstructed muon trajectories
JCalibrateMuon.hh
JCalibratePMT.sh
JCalibrateStrings.sh
JCalibrateToT.cc	Monitoring of PMT time-over-threshold distributions
JCalibrateToT.hh
JDrawK40.cc	Auxiliary program to draw K40 fit function
JEditTuneHV.cc	Auxiliary program to treat failed HV-tuning calibrations
JEditTuneHV.sh
JFitK40.cc	Auxiliary program to fit PMT parameters from JMergeCalibrateK40.cc output
JFitK40.hh
JFitToT.cc	Auxiliary program to fit time-over-threshold distributions
JFitToT.hh
JFrodo.cc	Fit time-slewing histogram in output of JCalibrateMuon.cc in calibration mode
JGetInputTuneHV.cc	Program to create input data for HV-tuning
JHobbit.cc	Program to fit time-residuals histogram in output of JCalibrateMuon.cc
JHobbit.sh
JHVInterpolator.hh
JLegolas.cc	Auxiliary program to model transition time distribution generator from data (e.g. output of JPulsar.cc)
JLegolas.sh
JMergeCalibrateK40.cc	Auxiliary program to merge K40 data
JMergeCalibrateToT.cc
JMergeTimeOffsets.cc	Auxiliary program to merge the time offsets of two detector files
JMergeTuneHV.cc	Auxiliary program to merge multiple HV tuning calibrations
JORCACalibrateMuon.sh
JParameters.hh
JPlotPMTSystematics.cc	Auxiliary application to convert PMT parameters text file to ROOT histograms
JPMTStatus.cc	Auxiliary program to update the PMT status in the detector file based on the fraction of short time-over-threshold values
JPrintTuneHV.cc	Auxiliary program to print HV-tuning output
JPulsar.cc	Application for dark room time calibration using external laser
JRecalibrateK40.sh
JTDC_t.hh
JTuneHV.cc	Program for inter-/extrapolation of nominal high-voltage settings
JTuneHV.sh
JTunePMTThreshold.cc	Auxiliary program to compute the PMT thresholds according to the small time-over-threshold fraction
JTunePMTThreshold.sh
► JCompareHistograms
JMantisShrimp.cc	Program to compare root histograms
JPrintTestResults.cc	Auxiliary program to print histogram comparison results
JResultTitle.hh
JTest_t.hh
JTestChi2.hh
JTestChi2_Bin.hh
JTestChi2_Slice2D.hh
JTestDictionary.hh
JTestIdentical.hh
JTestKolmogorov_1D.hh
JTestKolmogorov_2D.hh
JTestKolmogorov_Slice2D.hh
JTestPoissonLogLikelihoodRatio.hh
JTestPoissonLogLikelihoodRatioBeestonBarlow.hh
JTestResult.hh
JTestRuns_1D.hh
JTestRuns_Slice2D.hh
JTestSignificance.hh
JTestSummary.hh
JTestZero.hh
JZebraMantis.cc	Program to compare histograms in root files that have same directory structure, and where the histograms have the same names
► JCompass
compass_D0ARCA006.sh
compass_D0ARCA009.sh
compass_D0ARCA020.sh
compass_D0ARCA021.sh
compass_D0ARCW003.sh
compass_D0ORCA007.sh
compass_D0ORCA010.sh
compass_D0ORCA011.sh
compass_D0ORCA015.sh
compass_D0ORCA018.sh
compass_D1ORCA011.sh
compass_D1ORCA013.sh
compass_D1ORCA015.sh
compass_D1ORCA024.sh
compass_D_ORCA006.sh
get_convergence_angle.py
get_convergence_angle.sh
JAHRS.sh
JAHRSCalibration.sh
JAHRSMonitor.cc	Program to monitor AHRS data
JAHRSMonitor.sh
JBallarat.cc	Auxiliary program to process AHRS data
JBallarat.sh
JCompass.cc	Program to calibrate in situ AHRS
JCompass.sh
JCompassSupportkit.hh	Meridian convergence angles for different sites
JEvt.hh	Compass event data types
JEvtToolkit.hh	Compass event fit
JHit.hh
JModel.hh
JNOAA.hh
JPolicy.hh	Policy for invalid modules
JSupport.hh	ROOT TTree parameter settings
LinkDef.hh
makedeclinationtable.py
makedeclinationtable.sh
► JDAQ
JCLB.cc	Auxiliary program to convert raw CLB data to KM3NETDAQ::JDAQTimeslice data
JDAQChronometerIO.hh
JDAQEvaluator.hh
JDAQEventHeaderIO.hh
JDAQEventIO.hh
JDAQFrameIO.hh
JDAQFrameStatusIO.hh
JDAQHeaderIO.hh
JDAQHitIO.hh
JDAQKeyHitIO.hh
JDAQModuleIdentifierIO.hh
JDAQPMTIdentifierIO.hh
JDAQPreambleIO.hh
JDAQSizeof.hh
JDAQSummaryFrameIO.hh
JDAQSummarysliceHeaderIO.hh
JDAQSummarysliceIO.hh
JDAQSuperFrameHeaderIO.hh
JDAQSuperFrameIO.hh
JDAQTags.hh	Fixed parameters and ControlHost tags for KM3NeT DAQ
JDAQTestkit.hh
JDAQTimesliceHeaderIO.hh
JDAQTimesliceIO.hh
JDAQToolkit.hh
JDAQTriggerCounterIO.hh
JDAQTriggeredHitIO.hh
JDAQTriggerMaskIO.hh
JDAQUTCExtendedIO.hh
JHighRateVeto.hh
JSupport.hh	ROOT TTree parameter settings
► JDataFilter
JDataFilter.cc	Application for real-time filtering of data
JDataFilter.sh
JDQSimulator.cc	Program for real-time simulation of data queue
► JDataQuality
JDataMonitor.cc	Auxiliary program to plot data from data base or input file
JDataMonitor.sh
JDataQuality.cc	Main program to evaluate quality data from data base
JDataQuality.sh
JGITTags.hh	Selection of GIT tags
JMermaid.cc	Example program to monitor event duration
JPrintDataQuality.cc	Main program to print quality data from data base
JQAQC.sh
JSquid.cc	Example program to histogram string and floor time difference
qaqc.sh
► JDataWriter
JDataWriter.cc	Application for writing real-time data to disk
JDataWriter.sh
JEventGenerator.cc	Program for real-time simulation of data
► JDB
► codegen
classdef2code.cc
datalogs.sh
diff-Tuna.sh
file-Tuna.sh
getAPIV2.cc	Auxiliary program to print APIV2 version
getCookie.cc	Auxiliary program to print cookie file name
getDetector.cc	Auxiliary program to get serial number or object identifier of detector from database
getLocationID.cc	Auxiliary program to get location ID corresponding to given user login
getTimestamp.cc
getUserID.cc	Auxiliary program to get user ID corresponding to given user login
JAHRS.hh
JAHRSCalibration.cc	Auxiliary program to store AHRS calibration data on local disk
JAHRSCalibration.hh
JAHRSCalibration_t.hh
JAHRSCalibrationToolkit.hh
JAHRSDetectorCalibration.hh
JAHRSToolkit.hh
JAllParams.hh
JAsciiDB.cc	Auxiliary program to convert data from data base into ASCII format
JCalibration.hh
JCLBID.hh
JCLBMap.hh
JConvertDB.cc	Auxiliary program to convert data from data base into ROOT format
JCookie.sh
JDatabaseObjectIterator.hh
JDatalog.hh
JDatalogNumbers.hh
JDatalogString.cc	Auxiliary application to examine datalog file
JDatalogString.hh
JDate_t.hh
JDatim_t.hh
JDB.hh
JDBincludes.hh	This file is automatically created by make
JDBReader.hh
JDBString.hh
JDBSupportkit.cc
JDBSupportkit.hh
JDBToolkit.cc
JDBToolkit.hh
JDBTypes.hh	This file is automatically created by make
JDetCalibrations.cc	Auxiliary program to download default detector from database
JDetCalibrations.hh
JDetectorDB.cc	Auxiliary program to download or update detector from database
JDetectorIntegration.hh
JDetectorIntegration_t.hh
JDetectors.hh
JFileTuna.cc	Auxiliary program to write test criteria to file
JLocation_t.hh
JLoggerMessage.hh
JMACAddress.hh	MAC address
JPBS_t.hh
JPBSSequence.hh
JPersons.hh
JPMTBestHVSettings.hh
JPMTHV.hh
JPMTHVRunSettings.hh
JPMTHVSettings.hh
JPMTRunsetupParams.hh
JPMTSwapDB.cc	Auxiliary program to check HV
JPMTThreshold.cc	Auxiliary program to set PMT thresholds according DAQ configuration of a given data taking run
JPMTThreshold.hh
JPMTTTS.cc	Auxiliary program to set TTS function identifier in PMT parameters file according PMT variant
JPrintAHRSCalibration.cc	Example program for compass calibration
JPrintDB.cc	Auxiliary program to print data from data base
JPrintPMTThreshold.cc	Auxiliary program to print PMT thresholds
JPrintTuna.cc	Auxiliary program to print slow control parameters
JProductIntegration.hh
JProductRouter.hh
JReplyMessage.hh
JRootDB.cc	Auxiliary program to convert ASCII data from data base into ROOT format
JRunCalibration.cc	Auxiliary program to download official detector
JRunCalibration.hh
JRunQuality.cc
JRunQuality.hh
JRuns.cc	Example program to print run related data from data base
JRuns.hh
JRunsetupParams.hh
JRunsetups.hh
JRunSummaryNumbers.hh
JSelector.hh
JSelectorSupportkit.hh
JServerDB.cc	Auxiliary program to print host name of data base server
JSonDetector.cc	Auxiliary program to decompose detector to separate calibrations
JSonSupportkit.hh
JSupport.hh	ROOT TTree parameter settings
JTDC.cc	Auxiliary program to determine TDC constraints (input to JFitK40.cc) according HV settings from the database
JTestTuna.cc	Auxiliary program to apply test criteria to file
JTime_t.hh
JToAshort.hh
JTuna.cc	Auxiliary program to convert slow control data from the database to ROOT TTree
JTuna.sh
JTuna2Graph.cc	Auxiliary program to convert ROOT TTree with slow control data to ROOT TGraph's
JUPI.hh
JUPI_t.hh
JVendorHV.hh
LinkDef.hh
plot-Tuna.sh
test-Tuna.sh
► JDetector
compare-detector.sh
DomCrossing.hh
getLocation.cc	Auxiliary program to print module location for a given module identifier
getModule.cc	Auxiliary program to print module identifier for a given module location
getModuleStatus.cc	Auxiliary program to print module status for a given module identifier
getPMT.cc	Auxiliary program to print PMT data for a given PMT channel or identifier
getPMTStatus.cc	Auxiliary program to print PMT status for a given PMT identifier
JAlignDetector.cc	Auxiliary program to align two detectors
JAnchor.hh
JAttachPMTs.cc	Auxiliary program to attach PMTs to detector
JCalibration.hh	Time calibration (including definition of sign of time offset)
JCLBDefaultSimulator.hh
JCLBDefaultSimulatorInterface.hh
JCLBSimulator.hh
JCompareDetector.cc	Auxiliary program to find differences between two detector files
JCompareDetector.sh
JCompass.hh
JConstructDetector.cc	Auxiliary program to compose detector from separate calibrations
JConvertDetectorFormat.cc	Auxiliary program to convert format of detector files
JDAQHitRouter.hh	Direct access to PMT data in detector data structure for DAQ hits
JDestructDetector.cc	Auxiliary program to decompose detector to separate calibrations
JDetachPMTs.cc	Auxiliary program to detach PMTs from detector
JDetector.cc	Auxiliary program to generate detector files
JDetector.hh	Data structure for detector geometry and calibration
JDetector.sh
JDetectorAddressMap.hh
JDetectorCalibration.hh
JDetectorHeader.hh
JDetectorID.hh
JDetectorParameters.hh
JDetectorSimulator.hh
JDetectorSubset.hh	Auxiliary class to extract a subset of optical modules from a detector
JDetectorSupportkit.hh	Detector support kit
JDetectorToolkit.hh
JDetectorVersion.hh	Data structure for detector version
JDOMMap.cc	Auxiliary program to create module map of PMT addresses
JEditDetector.cc	Auxiliary program to modify detector calibration
JEditPMTParameters.cc	Auxiliary program to edit PMT parameters map
JHydrophone.hh	Data structure for hydrophone
JK40DefaultSimulator.hh
JK40DefaultSimulatorInterface.hh
JK40Simulator.hh
JLocation.hh	Logical location of module
JLocationRouter.hh	Direct access to location in detector data structure
JMergeDetector.cc	Auxiliary program to merge detector files
JModule.cc	Auxiliary program to generate detector file with set of modules
JModule.hh	Data structure for optical module
JModuleAddress.hh
JModuleAddressMap.hh
JModuleComparator.hh	Auxiliary classes to compare modules
JModuleGeometry.hh
JModuleIdentifier.hh
JModuleMapper.hh	Map of associated modules in detector
JModuleRouter.hh	Direct access to module in detector data structure
JModuleStatus.hh
JModuleSupportkit.hh	Module support kit
JMonteCarloDetector.hh
JPMT.hh	Data structure for PMT geometry and calibration
JPMTAddress.hh
JPMTAnalogueSignalProcessor.hh	PMT analogue signal processor
JPMTChannel.hh	Data structure to uniquely identify PMT readout channel
JPMTDefaultSimulator.hh
JPMTDefaultSimulatorInterface.hh
JPMTIdentifier.hh
JPMTParameters.hh
JPMTParametersMap.hh
JPMTParametersToolkit.hh
JPMTPhysicalAddress.hh
JPMTRateRange.hh
JPMTReadoutAddress.hh
JPMTRouter.hh	Direct access to PMT in detector data structure
JPMTSignalProcessorInterface.hh
JPMTSimulator.hh
JPMTStatus.hh
JPMTTransitTimeGenerator.hh
JPMTTransitTimeProbability.hh
JPrintDetector.cc	Auxiliary program to print detector file in human friendly format
JPrintPMTParameters.cc	Auxiliary program to print PMT parameters
JStringCounter.hh
JStringRouter.hh	Direct access to string in detector data structure
JTimeRange.hh
JTransmitter.hh	Data structure for transmitter
JTripod.hh	Data structure for tripod
JVersion.hh
► JDOMProduction
JAcceptanceTest.sh
JDomAnalyser.cc
JDOMDAQDriver.sh
► JDynamics
JCoverage.hh	Coverage of dynamical detector calibration
JDynamics.cc	Example program to apply dynamic position and orientation calibration
JDynamics.hh	Dynamic detector calibration
JDynamics.sh
► Jeep
getGITTags.cc	Auxiliary program to print GIT tags
JArgs.hh
JColor.hh	I/O coloring auxiliaries
JComment.hh
JCommunicator.hh	Switching on/off of standard and error output streams
JComparisonToolkit.hh
JContainer.hh	Container I/O
JDate.hh
JEditProperties.cc	General purpose program to edit or create properties file
JeepToolkit.hh	Auxiliary methods for handling file names, type names and environment
JFunctionAdaptor.hh
JGITTags.cc
JGITTags.hh	Dates GIT tags
JLib.hh
JMessage.hh	General purpose messaging
JParser.hh	Utility class to parse command line options
JPrint.hh	I/O formatting auxiliaries
JPrintProperties.cc	General purpose program to print properties file
JProperties.hh	Utility class to parse parameter values
JScale.hh	Enumeration for scaling of quantity
JShellParser.cc	Auxiliary program to interface JPARSER::JParser to command line of shell scripts
JStatus.hh
JStreamToolkit.hh
JTime.hh
JTimekeeper.hh	Scheduling of actions via fixed latency intervals
JTimer.hh
JVersion.hh
► JFFT
JFFT.cc	Auxiliary program to run fast Fourier transformation (FFT)
► JFit
JEnergy.hh
JEnergyRegressor.hh	Data regression method for JFIT::JEnergy
JEstimator.hh	Linear fit methods
JFitToolkit.hh	Auxiliary methods to evaluate Poisson probabilities and chi2
JGandalf.hh
JGradient.hh
JK40.hh
JK40Hit.hh
JLegendreEstimator.hh	Linear fit of JMATH::JLegendre
JLine1Z.hh
JLine1ZEstimator.hh	Linear fit of JFIT::JLine1Z
JLine3EZ.hh
JLine3Z.hh
JLine3ZRegressor.hh	Data regression method for JFIT::JLine3Z
JMatrixNZ.hh
JMEstimator.hh	Maximum likelihood estimator (M-estimators)
JModel.hh
JNPE.hh
JNPEHit.hh
JPMTW0.hh
JPoint3D.hh
JPoint3DEstimator.hh	Linear fit of JFIT::JPoint3D
JPoint4D.hh
JPoint4DEstimator.hh	Linear fit of JFIT::JPoint4D
JPoint4DRegressor.hh
JPoint4E.hh
JRegressor.hh	General purpose data regression method
JShower3EZ.hh
JShower3EZRegressor.hh	Data regression method for JFIT::JShower3EZ
JShower3Z.hh
JShowerBjorkenYRegressor.hh	Data regression method for JFIT::JShowerEH
JShowerBrightPointRegressor.hh	Data regression method for JFIT::JPoint4E from a bright point isoptropic emission PDF
JShowerEH.hh
JShowerEnergyRegressor.hh	Data regression method for JFIT::JShower3EZ only focused on the energy estimation from a bright point emission PDF and considering the hit/non hit information for each PMT
JShowerNPE.hh
JShowerNPEHit.hh
JSimplex.hh
JTimeRange.hh
JVectorNZ.hh
► JGeometry2D
JAngle2D.hh
JAxis2D.hh
JCircle2D.hh
JDirection2D.hh
JEigen2D.hh
JGeometry2DTestkit.hh
JGeometry2DToolkit.hh
JMatrix2D.hh
JOmega2D.hh
JPosition2D.hh
JRotation2D.hh
JRotator2D.hh
JSegment2D.hh
JVector2D.hh
JVersor2D.hh
► JGeometry3D
JAngle3D.hh
JAxis3D.hh
JCylinder3D.hh
JDirection3D.hh
JEigen3D.hh
JEulerAngle3D.hh
JEulerMatrix3D.hh
JGeometry3DTestkit.hh
JGeometry3DToolkit.hh
JMatrix3D.hh
JOmega3D.hh
JPolyline3D.hh
JPosition3D.hh
JQuaternion3D.hh
JRotation3D.hh
JRotator3D.hh
JSegment3D.hh
JShower3D.hh
JShower3E.hh
JShower3EY.hh
JSphere3D.hh
JTime.hh
JTrack3D.hh
JTrack3E.hh
JTrack3EY.hh
JTransformation3D.hh
JVector3D.hh
JVersor3D.hh
JVersor3Z.hh
JVertex3D.hh
► JGizmo
getAAnetFiles.cc	Auxiliary program to select Monte Carlo files according generator
getFrameIndex.cc	Auxiliary program to print frame index range of data taking run
getLivetime.cc	Auxiliary program to print live time of data taking
getLivetime.sh
getNamespace.cc	Auxiliary program to print name space
getUTC.cc	Auxiliary program to print UTC start and stop time of data taking run
getUUID.cc	Auxiliary program to print UUID
include.cc	Auxiliary program to check for include file within Jpp repository
JCheckTriggerParameters.cc	Auxiliary program to check trigger parameters in a given ROOT files against the values from the database
JCheckTriggerParameters.sh
JConvert.cc	Auxiliary program to convert data formats and/or to select data
JConvert.sh
JConvertDusj.cc
JConvertDusj.sh
JConvertToPDF1D.cc	Auxiliary program to convert 1D histograms to PDFs
JConvertToPDF2D.cc	Auxiliary program to convert 2D histograms to PDFs
JConvertToPDF3D.cc	Auxiliary program to convert 3D histograms to PDFs
JDAQSplit.cc	Auxiliary program to split DAQ data into multiple output files
JDrawDetector1D.cc	Auxiliary program to draw the z-positions of the modules in detector
JDrawDetector2D.cc	Auxiliary program to draw the footprint of detector(s)
JDrawDetector3D.cc	Auxiliary program to draw the detector in 3D
JDrawModule3D.cc	Auxiliary program to draw a given module in 3D
JEllipse.cc	Auxiliary program to create TEllipse
JEvt.cc	Auxiliary program for time sorting of Monte-Carlo events
JEvtMerge.cc	Auxiliary program for time sorting of Monte-Carlo events
JEvtSplit.cc	Auxiliary program for time sorting of Monte-Carlo events
JF1.cc	Auxiliary program to write 1D ROOT function
JF2.cc	Auxiliary program to write 2D ROOT function
JFit.cc	General purpose fit program for 1D ROOT objects
JFit2D.cc	General purpose fit program for 2D ROOT objects
JFit3D.cc	General purpose fit program for 3D ROOT objects
JGizmoToolkit.hh
JGraph.cc	Auxiliary program to create TGraph from input file with ASCII data
JGraph2D.cc	Auxiliary program to create TGraph2D from input file with ASCII data
JLine.cc	Auxiliary program to create TLine
JOpera1D.cc	Auxiliary program for operations on 1D histograms
JOpera2D.cc	Auxiliary program for operations on 2D histograms
JOpera3D.cc	Auxiliary program for operations on 3D histograms
JPlot1D.cc	General purpose plot program for 1D ROOT objects
JPlot2D.cc	General purpose plot program for 2D ROOT objects
JPrint.cc	Auxiliary program to print 'any' data
JPrintAxisLabel.cc	Auxiliary program to print axis label of ROOT objects
JPrintChain.cc	Auxiliary program to print ROOT TChain information
JPrintChain.sh
JPrintDAQHeader.cc	Auxiliary program to print DAQ header data
JPrintFit.cc	Auxiliary program to print ROOT fit results
JPrintHeader.cc	Auxiliary program to print contents of summed Monte Carlo run headers
JPrintHeader.sh
JPrintHeaderFromFilelist.sh
JPrintMaximum1D.cc	Auxiliary program to print (x) of the maximum of 1D ROOT objects
JPrintMaximum2D.cc	Auxiliary program to print (x,y) of the maximum of 2D ROOT objects
JPrintMeta.cc	Auxiliary program to print Jpp meta data
JPrintMultiHeader.cc	Auxiliary program to print Monte Carlo run headers
JPrintName.cc	Auxiliary program to print name of ROOT objects
JPrintQuantiles.cc	Auxiliary program to print quantiles from ROOT histograms or graphs
JPrintRandom.cc	Auxiliary program to print ROOT TRandom seed
JPrintRange1D.cc	Auxiliary program to print the ranges of x and y values of 1D ROOT objects
JPrintRange2D.cc	Auxiliary program to print the ranges of x, y and z values of 2D ROOT objects
JPrintRange3D.cc	Auxiliary program to print the ranges of x, y, z and c values of 3D ROOT objects
JPrintResult.cc	Auxiliary program to print result from ROOT objects
JPrintRootClass.cc	Auxiliary program to print ROOT class information
JPrintRootVersion.cc	Auxiliary program to print ROOT class version information
JPrintTitle.cc	Auxiliary program to print title of ROOT objects
JPrintTree.cc	Auxiliary program to print ROOT TTree information
JPrintTree.sh
JPrintTreeParameters.cc	Auxiliary program to print ROOT TTree parameters
JProfile2D.cc	Auxiliary program to profile 2D histograms
JProfiler.cc	Auxiliary program to monitor memory and CPU usage of process
JProject2D.cc	Auxiliary program to project 2D histograms
JProject3D.cc	Auxiliary program to project 3D histograms
JQuantiles1D.cc	Auxiliary program to print quantiles from 1D histogram
JQuantiles2D.cc	Auxiliary program to extract quantiles from 2D histogram
JRebin1D.cc	Auxiliary program to rebin ROOT histograms
JRegurgitate.cc	Auxiliary program to send objects to JLigier.cc server
JRoot.cc	Auxiliary program to convert binary data to ROOT formatted data
JRootObject.hh
JRootObjectID.hh
JScale1D.cc	Auxiliary program to scale ROOT histograms
JSon.cc	Auxiliary program to print 'any' data in JSON format
JStack1D.cc	Auxiliary program to make stack of ROOT histograms
JStdev1D.cc	Auxiliary program to determine standard deviation of a set of 1D histograms
JSum1D.cc	Auxiliary program to make cumulative ROOT histogram
JSummaryMonitor.cc	Auxiliary program to monitor summary data
JTestChi2.cc	Auxiliary program for chi2 test of 1D histograms
JTestFit.cc	Auxiliary program to test ROOT fit results
JTestRange1D.cc	Auxiliary program to test contents of of 1D histograms
JTestRange2D.cc	Auxiliary program to test contents of 2D histograms
JTestRange3D.cc	Auxiliary program to test contents of 3D histograms
JText.cc	Auxiliary program to create TText
JTop.cc	Auxiliary program to continually monitor processes
JVariance1D.cc	Auxiliary program to histogram bin-by-bin deviations of the contents of one (or more) 1D histogram(s)
JVariance2D.cc	Auxiliary program to histogram bin-by-bin deviations of the contents of one (or more) 1D histogram(s)
► JIO
JBinaryFileReader.hh
JBinaryFileWriter.hh
JBufferedIO.hh
JByteArrayIO.hh
JFileIO.hh
JFileStreamIO.hh
JIOToolkit.hh	Auxiliary methods for binary I/O
JObjectBinaryIO.hh
JReaderObjectIterator.hh
JSerialisable.hh
JSTDIO.hh	STD extensions for binary I/O
JStreamIO.hh
JWriterObjectOutput.hh
► JLang
gzstream.h
JAbstractClass.hh
JAbstractFile.hh
JAbstractIO.hh
JAbstractObjectIterator.hh
JAbstractObjectReader.hh
JAbstractObjectStatus.hh
JAbstractObjectWriter.hh
JAbstractPointer.hh
JAccessible.hh
JAccessibleBinaryStream.hh
JAccessibleStream.hh
JAllocator.hh	Auxiliary class to speed up new/delete operations of any class
JAnyType.hh
JASCIIFileReader.hh
JASCIIFileWriter.hh
JAssert.hh
JBaseClass.hh	Auxiliary class to identify common base class in type list
JBidirectionalIterator.hh
JBinaryIO.hh
JBool.hh
JCategory.hh
JCC.hh	Compiler version dependent expressions, macros, etc
JClass.hh
JClonable.hh
JColorFacet.cc
JColorFacet.hh
JComparable.hh
JComparator.hh
JComparison.hh
JComparisonAvailable.hh
JConstructor.hh
JConversion.hh
JConversionIterator.hh
JCppFacet.hh
JCRC.hh
JCSV.hh	Utility method to assign multiple values to STD container
JDefault.hh
JEnumeration.hh
JEquals.hh
JEquation.hh
JEquation_t.hh
JEquationFacet.hh
JEquationParameters.hh
JException.hh	Exceptions
JFile.hh
JFileDescriptorMask.hh
JFileStream.hh
JFileStreamBuffer.hh
JFind_if.hh
JForwardIterator.hh
JGroup.hh
JGZFileReader.hh
JGZFileWriter.hh
JLangToolkit.hh
JLoadProperty.hh
JManip.hh	I/O manipulators
JMemory.hh	Base class for memory management
JMultiComparable.hh
JMultiEquals.hh
JMultiPointer.hh
JMutex.hh	Very basic lock facilities to be used in multithreaded programs
JNullStream.hh
JNullStreamBuffer.hh
JNullType.hh
JNumber.hh
JObject.hh
JObjectAllocator.hh	Auxiliary base class to speed up new/delete operations of any class
JObjectDemultiplexer.hh
JObjectID.hh
JObjectIO.hh	General methods for loading and storing a single object from and to a file, respectively
JObjectIterator.hh
JObjectMultiplexer.hh
JObjectOutput.hh
JObjectReader.hh
JObjectSampler.hh
JObjectSelector.hh
JObjectStatus.hh
JObjectStreamIO.hh
JObjectWriter.hh
JParameter.hh
JPipe.hh	Implementation of pipe operation for object iterators
JPointer.hh
Jpp.cc
Jpp.hh	Jpp environment information
JPredicate.hh
JPrimitiveTypes.hh	Type list of primitive data types
JPrintHelper.hh
JRAM.hh	Auxiliary class to speed up new/delete operations of any class
JRedirectStream.hh
JRedirectString.hh
JReference.hh
JRegulator.hh
JResolve.hh
JRewindable.hh
JSampler.hh
JSharedCounter.hh
JSharedPointer.hh
JSinglePointer.hh
JSingleton.hh
JStatic.hh
JSTDObjectIterator.hh
JSTDObjectOutput.hh
JSTDObjectReader.hh
JSTDObjectWriter.hh
JSTDToolkit.hh
JSTDTypes.hh	Forward declarations of STD containers
JStorage.hh
JStreamAvailable.hh
JStreamObjectIterator.hh
JStreamObjectOutput.hh
JStreamState.hh
JString.hh
JStringFacet.cc
JStringFacet.hh
JStringStream.hh
JSwitch.hh
JTemplate.hh	Auxiliary class to alleviate the diamond problem due to multiple inheritance
JTemplateReader.hh
JTemplateWriter.hh
JTest.hh
JThrow.hh	Exception handling
JTimeval.hh
JTitle.hh
JToken.hh
JTwosome.hh
JType.hh
JTypeID.hh
JTypeInfo.hh
JTypeList.hh
JTypeSelector.hh
JUUID.hh
JValue.hh
JValve.hh
JVectorize.hh	Auxiliary methods to convert data members or return values of member methods of a set of objects to a single vector
JVoid.hh
JWhiteSpacesFacet.hh
► JLogger
JControlHostLogger.hh
JGetMessage.cc	Auxiliary program to receive messages from ControlHost server
JLogger.cc	Auxiliary program to save logger messages from ControlHost server
JLogger.hh
JLogger.sh
JMessageLogger.hh	General purpose message reporting
JMessageScheduler.hh
JMessageStream.hh	Message reporting compatible with STL output stream operations
JPutMessage.cc	Auxiliary program to send message to ControlHost server
JStreamLogger.hh
► JMarkov
JBeaconSimulator.cc
JBeaconSimulator.sh
JMarkovGenerator.hh
JMarkovIntegrator.hh
JMarkovPathGenerator.hh
JMarkovPhotonTracker.hh
JPhotonPath.hh
JPhotonPathReader.hh
JPhotonPathWriter.hh
JScatteringModel.hh
LinkDef.hh
► JMath
JCalculator.hh
JConstants.hh	Mathematical constants
JGauss.hh
JLegendre.hh
JLimits.hh	Definition of minimum and maximum values for any class
JMath.hh	Base class for data structures with artithmetic capabilities
JMathlib.hh	Functional algebra
JMathlib2D.hh	Functional algebra in 2D
JMathlib3D.hh	Functional algebra in 3D
JMathSupportkit.hh	Auxiliary methods for mathematics
JMathTestkit.hh
JMathToolkit.hh	Auxiliary methods for geometrical methods
JMatrix1D.hh
JMatrix1S.hh
JMatrix2D.hh
JMatrix2S.hh
JMatrix3D.hh
JMatrix3S.hh
JMatrix4D.hh
JMatrix4S.hh
JMatrix5D.hh
JMatrix5S.hh
JMatrixND.hh
JMatrixNS.hh
JModel.hh
JNumber.hh	Definition of number value for any class
JPolynome.hh
JPower.hh
JQuantile_t.hh
JRandom.hh	Definition of random value generator
JSVD3D.hh
JTrigonometric.hh
JVectorND.hh
JZero.hh	Definition of zero value for any class
► JMonitor
JCluster.hh
JClusterBuilder.hh
JDepthDependence.cc	Auxiliary program to find depth dependence of multiplicity rates
JFitMultiplicity.cc	Auxiliary program to fit multiplicity rates from JMonitorMultiplicity output
JFitSinglesRates.cc	Auxiliary program to fit singles rate distributions
JMonitorDOM.cc	Auxiliary program to monitor optical module response
JMonitorMultiplicity.cc	Auxiliary program to analyse coincidence multiplicity;
JMonitorSinglesRates.cc	Monitoring of PMT time over threshold distributions
JSlewingK40.cc	Auxiliary program to determine time slewing from K40 data
► JNet
JControlHost.hh
JControlHostObjectIterator.hh
JControlHostObjectOutput.hh
JControlHostServer.hh
JGetData.cc	Auxiliary program to receive messages from ControlHost server
JHostname.hh
JLigier-local.sh
JLigier.cc	Quicksilver Messenger Service - a ControlHost server
JLigier.sh
JLigierMirror.cc	A tool to forward messages with the given tags from one ControlHost server (e.g
JLigierObjectIterator.hh
JPrefix.hh
JPutData.cc	Auxiliary program to send messages to ControlHost server
JSelect.hh
JSelectReader.hh
JSelectWriter.hh
JServerSocket.hh
JShowStat.cc	Auxiliary program to send show status message to JLigier.cc - ControlHost server
JSocket.hh	Base class for interprocess communication
JSocketAddress.hh
JSocketBlocking.hh
JSocketChannel.hh
JSocketNonblocking.hh
JSocketStatus.hh
JTag.hh	ControlHost tag
JTCPSocket.hh
JUDPSocket.hh
► JOscProb
JBaselineComputer.hh
JBaselineComputerInterface.hh
JComplexPhase.hh
JMassSquaredDifference.hh
JMixingAngle.hh
JOscChannel.hh
JOscillogram.hh
JOscParameter.hh
JOscParameters.hh
JOscParametersHelper.hh
JOscParametersInterface.hh
JOscProbHelper.hh
JOscProbInterface.hh
JOscProbInterpolator.hh
JOscProbToolkit.hh
► JPhysics
Antares.hh	Properties of Antares PMT and deep-sea water
getK40Rates.cc	Auxiliary program to print K40 rates
JAbstractMedium.hh
JAbstractPMT.hh
JACoeffSource.hh
JAddHDE.cc	Program to add 5-dimensional histograms of shower light
JAddHDF.cc	Program to add multi-dimensional histograms of muon light
JAddHDG.cc	Program to add multi-dimensional histograms of shower light
JAddPDF.cc	Auxiliary program to add PDF tables of the arrival time of the Cherenkov light from a muon
JAddPDG.cc	Auxiliary program to add PDF tables of the arrival time of the Cherenkov light from an EM-shower
JBlurPDF.cc	Auxiliary program to apply the transition time spread (TTS) of the PMTs to interpolation tables of PDFs
JCDFTable.hh
JConstants.hh	Physics constants
JDemoPDF.cc	Demonstration program to plot RMS of arrival time of first hit as a function of the minimal distance of approach of a muon to the PMT
JDiffPD0.cc	Auxiliary program to compare PDF tables of the arrival time of the Cherenkov light from a bright point
JDiffPDF.cc	Auxiliary program to compare PDF tables of the arrival time of the Cherenkov light from a muon
JDiffPDG.cc	Auxiliary program to compare PDF tables of the arrival time of the Cherenkov light from a shower
JDIS.hh	Deep-inelastic muon-nucleon scattering
JDispersion.hh
JDispersionInterface.hh
JDrawPD0.cc	Auxiliary program to draw PDF of Cherenkov light from bright point
JDrawPDE.cc	Auxiliary program to draw PDF of Cherenkov light from EM-shower including shower profile
JDrawPDF.cc	Auxiliary program to draw PDF of Cherenkov light from muon
JDrawPDG.cc	Auxiliary program to draw PDF of Cherenkov light from EM-shower or scattered light from muon
JGeane.hh	Energy loss of muon
JGeant.hh	Photon emission profile EM-shower
JGeant_t.hh	Base class for photon emission profile EM-shower
JGeanx.hh	Photon emission profile EM-shower
JGeanz.hh	Longitudinal emission profile EM-shower
JHistHDE.cc	Program to histogram event-by-event and track-by-track for making PDFs of lights of individual particles
JHistHDF.cc	Program to histogram event-by-event data of muon light for making PDFs
JHistHDG.cc	Program to histogram event-by-event data of shower light for making PDFs
JIonization.hh
JK40Rates.hh
JLED.hh
JMakeCDF.cc	Main program to create table of CDFs from table of PDFs for Cherenkov light from muon
JMakeCDG.cc	Main program to create table of CDFs from table of PDFs for Cherenkov light from EM-shower
JMakeHDE.cc	Program to convert 5-dimensional histograms of shower light to multi-dimensional PDFs
JMakeHDF.cc	Program to convert multi-dimensional histograms of muon light to multi-dimensional PDFs
JMakeHDG.cc	Program to convert multi-dimensional histograms of shower light to multi-dimensional PDFs
JMakePD0.cc	Program to create interpolation tables of the PDF of the arrival time of the Cherenkov light from a bright point
JMakePDE.cc	Program to create interpolation tables of the PDF of the arrival time of the Cherenkov light from a shower
JMakePDF.cc	Program to create interpolation tables of the PDF of the arrival time of the Cherenkov light from a muon
JMakePDF.sh
JMakePDG.cc	Program to create interpolation tables of the PDF of the arrival time of the Cherenkov light from a shower
JMergePDF.cc	Program to merge interpolation tables of muon light for PDFs
JMergePDG.cc	Program to merge interpolation tables of shower light for PDFs
JNeutrino.hh
JNPE_t.hh	Auxiliary data structure for muon PDF
JNPETable.hh
JPDF.hh
JPDF_t.hh	Auxiliary data structure for muon PDF
JPDFTable.hh
JPDFToolkit.hh	Auxiliary methods for PDF calculations
JPDFTransformer.hh
JPDFTypes.hh	Numbering scheme for PDF types
JPhysicsSupportkit.hh
JPhysicsToolkit.hh	Auxiliary methods for physics calculations
JPlotCDF.cc	Program to verify generation of arrival times of Cherenkov photons from a muon using tabulated CDF
JPlotCDG.cc	Program to verify generation of arrival times of Cherenkov photons from a shower using tabulated CDF
JPlotNPE.cc	Program to plot PDF of Cherenkov light from EM-shower using interpolation tables
JPlotPD0.cc	Program to plot PDF of Cherenkov light from bright point using interpolation tables
JPlotPDF.cc	Program to plot PDF of Cherenkov light from muon using interpolation tables
JPlotPDG.cc	Program to plot PDF of Cherenkov light from EM-shower or scattered light from muon using interpolation tables
JRadiation.hh	Muon radiative cross sections
JRadiationFunction.hh
JRadiationSource.hh
JTimeRange.hh
KM3NeT.hh	Properties of KM3NeT PMT and deep-sea water
KM3NeT2D.hh	Properties of KM3NeT PMT and deep-sea water
► JReconstruction
JAAPostfit.cc	Example program to analyse fit results from Evt formatted data
JARCAEnergyCorrection.sh
JARCAMuonReconstruction.hh
JARCAMuonReconstruction.sh
JConvertEvt.cc	Auxiliary program to convert fit results to Evt format
JConvertEvt.sh
JConvertFit.cc	Auxiliary program to convert data formats
JDataPostfit.cc	Program to histogram fit results from reconstructed data
JEditEnergyCorrection.cc	Example program to edit energy correction
JEnergyCorrection.cc	Utility program to determine energy correction
JEnergyCorrection.hh
JEventSelector.hh
JEvt.cc
JEvt.hh
JEvtToolkit.hh
JFitStatus.hh	Definition for fit results
JHistory.cc	Program to set fit status according match of history with list of application types
JHistory.hh
JHitW0.hh
JMergeFit.cc	Program to merge different files with JFIT::JEvt data
JModuleL0.hh
JMultiThreadedReconstruction.hh
JMuonCompass.cc	Program to perform compass calibration using reconstructed muon trajectories
JMuonCompass.hh
JMuonEnergy.cc	Program to perform JFIT::JRegressor<JEnergy, JGandalf> fit using I/O of JFIT::JEvt data
JMuonEnergy.hh
JMuonEnergyParameters_t.cc
JMuonEnergyParameters_t.hh
JMuonFeatures.cc	Program to perform JFIT::JRegressor<JFIT::JLine3Z,JFIT::JGandalf> fit with I/O of JFIT::JEvt data
JMuonFeatures.hh
JMuonGandalf.cc	Program to perform JFIT::JRegressor<JFIT::JLine3Z,JFIT::JGandalf> fit with I/O of JFIT::JEvt data
JMuonGandalf.hh
JMuonGandalfParameters_t.cc
JMuonGandalfParameters_t.hh
JMuonMCEvt.cc	Auxiliary program to store Monte Carlo true muon in JFIT::JEvt format
JMuonParameters.cc
JMuonParameters.hh
JMuonPostfit.cc	Example program to histogram fit results for the muon reconstruction chain
JMuonPostfit.sh
JMuonPrefit.cc	Program to perform linear fits JFIT::JEstimator<JFIT::JLine1Z> covering the solid angle producing JFIT::JEvt data
JMuonPrefit.hh
JMuonPrefitParameters_t.cc
JMuonPrefitParameters_t.hh
JMuonSelect.cc	Program to extract events based on muon reconstruction
JMuonSimplex.cc	Program to perform JFIT::JRegressor<JFIT::JLine3Z,JFIT::JSimplex> fit with I/O of JFIT::JEvt data
JMuonSimplex.hh
JMuonSimplexParameters_t.cc
JMuonSimplexParameters_t.hh
JMuonStart.cc	Program to perform JFIT::JRegressor<JEnergy> fit with I/O of JFIT::JEvt data
JMuonStart.hh
JMuonStartParameters_t.cc
JMuonStartParameters_t.hh
JORCAMuonReconstruction.hh
JORCAMuonReconstruction.sh
JORCAReconstruction.hh
JORCAShowerReconstruction.hh
JORCAShowerReconstruction.sh
JPerth.cc	Program to determine string or optical module time calibrations
JPrintEvt.cc
JQuality.cc	Auxiliary program to sum fit quality
JRange_t.hh
JShowerBjorkenY.cc	Program to perform Shower Bjorken Y Fit for ORCA with I/O of JFIT::JEvt data
JShowerBjorkenY.hh
JShowerBjorkenYParameters_t.cc
JShowerBjorkenYParameters_t.hh
JShowerDirectionPrefit.cc	Program to perform EM Shower Fit for ORCA with I/O of JFIT::JEvt data
JShowerDirectionPrefit.hh
JShowerDirectionPrefitParameters_t.cc
JShowerDirectionPrefitParameters_t.hh
JShowerEnergyCorrection.hh
JShowerFit.cc	Program to perform EM Shower Fit for ORCA with I/O of JFIT::JEvt data
JShowerFit.hh
JShowerFitParameters_t.cc
JShowerFitParameters_t.hh
JShowerMCEvt.cc	Auxiliary program to store Monte Carlo information from a neutrino or the primary electron in JFIT::JEvt format
JShowerParameters.cc
JShowerParameters.hh
JShowerPointSimplex.cc	Program to perform EM Shower Fit for ORCA with I/O of JFIT::JEvt data
JShowerPointSimplex.hh
JShowerPointSimplexParameters_t.cc
JShowerPointSimplexParameters_t.hh
JShowerPositionFit.cc	Program to perform EM Shower Second Position Fit for ORCA with I/O of JFIT::JEvt data
JShowerPositionFit.hh
JShowerPositionFitParameters_t.cc
JShowerPositionFitParameters_t.hh
JShowerPostfit.cc	Example program to histogram shower fit results: it handles both neutrino and muon productions
JShowerPostfit.sh
JShowerPrefit.cc
JShowerPrefit.hh
JShowerPrefitParameters_t.cc
JShowerPrefitParameters_t.hh
JStart.hh	Auxiliary method to locate start and end point of muon trajectory
LinkDef.hh
► JROOT
JAbstractStreamer.hh	This file contains the basic interface for ASCII I/O of ROOT objects
JASCIIFileStreamer.hh
JCanvas.hh
JChainReader.hh	TChain reading for template data type
JClassDef.hh
JClassStreamer.hh
JCounter.hh	Type definition for counter for ROOT TTree and auxiliary methods
JDataFrame.hh
JGraph.hh
JGraph2D.hh
JGraph2DErrors.hh
JGraphErrors.hh
JLegend.hh
JLineAttributes.hh
JManager.hh	Dynamic ROOT object management
JMarkerAttributes.hh
JMathSupportkit.hh
JMinimizer.hh
JRandom.hh
JRoot.hh
JROOT_t.hh	This include file serves the purpose of hiding ROOT dependencies and circumphere namespace problems when using rootcint
JRootAddress.hh
JRootClass.hh
JROOTClassSelector.hh
JRootComparator.hh
JRootDictionary.hh
JRootDictionary_t.hh
JRootFile.hh
JRootFileReader.hh
JRootFileWriter.hh
JRootfit.hh
JRootLabel.hh
JRootPrimitiveTypes.hh
JRootPrinter.hh	Print objects in ASCII format using ROOT dictionary
JRootStreamer.hh	ASCII I/O of objects with ROOT dictionary
JRootStreamObjectOutput.hh
JRootSupportkit.hh	Data type dependent action methods for customised ROOT version management
JRootTestkit.hh
JRootToolkit.hh
JRootTypesHandler.hh
JRootTypewriter.hh
JSonObjectOutput.hh
JStyle.hh
JTreeBranchAddresses.hh
JTreeParameters.hh
JTreeReader.hh	TTree reading for template data type
JTreeReaderObjectIterator.hh
JTreeWriter.hh	TTree writing for template data type
JTreeWriterObjectOutput.hh
► JRunAnalyzer
JMergeRunAnalyzer.cc
JMergeRunAnalyzer.sh
JRunAnalyzer.cc
JRunAnalyzer.hh
JRunAnalyzer.sh
JRunHistograms.hh
JRunInfo.hh
LinkDef.hh
► JRuncontrol
JClient.cc
JClient.hh
JClientList.hh
JDAQCHSM.cc
JDAQCHSM.chsm
JDAQCHSM.hh
JDAQClient.hh
JDAQClientStarter.cc	Auxiliary program to start (remote) run control client
JDAQDemoClient.cc	Run control demo client class
JDAQDemoClient.sh
JDAQDriver.cc	Run control driver program
JDAQDriver.hh
JDAQDriver.sh
JEvent_t.hh
JEventTable.hh
JRuncontrolToolkit.hh
JStopDAQ.sh
► JSirene
JCDFTable1D.hh
JCDFTable2D.hh
JDomino.cc	Example program to verify Monte Carlo data
JDomino.sh
JEventShapeVariables.cc	Auxiliary program to plot event shape variables
JEventShapeVariables.hh	Event shape variables
JModK40.cc	Auxiliary program to generate noise in Monte Carlo event
JPizza.cc	Example program to verify generator data
JPizza.sh
JPrintDomino.cc	Auxiliary program to print JDomino.cc statistics
JPrintSirene.cc	Auxiliary program to print JSirene.cc job statistics
JPulse.hh	Time-over-threshold (ToT) pulse from a PMT
JPythia.hh
JSeaWater.hh
JSirene.cc	Main program to simulate detector response to muons and showers
JSirene.hh
JSirene.sh
JSireneToolkit.hh	Toolkit for JSirene
JStingray.cc	Auxiliary program to manipulate MUPAGE data
JVisibleEnergyToolkit.hh	Auxiliary methods for evaluating visible energies
plot-Domino.sh
plot-Sirene.sh
pythia.hh	This file contains converted Fortran code from km3
► JSon
JComparator.hh
JPrinter.hh
JSon.hh
JSonDiff.cc	Auxiliary program to compare (part of) JSon files
JSonPrint.cc	Auxiliary program to print (part of) JSon files
JSupport.hh	JSon definitions and auxiliaries
► JSummaryslice
JSummary.cc	Auxiliary program to blend and write summary data
JSummaryslice.hh	Auxiliaries for creation of summary data
JSummaryWriter.cc	Auxiliary program to write summary data
► JSupernova
JKaboom.cc
JKexing.cc
JKexing2D.cc
JKexing2D.hh
JProcessKexing2D.cc	Auxiliary program to build supernova background from JKexing2D output
JSupernova.hh
JSupernovaProcessor.cc	Online supernova processor
JSupernovaProcessor.hh
► JSupport
JAutoTreeScanner.hh
JAutoTreeWriter.hh
JDAQFileReader.hh
JDAQFileWriter.hh
JEvtWeightFileScanner.hh
JEvtWeightFileScannerSet.hh
JFilenameSupportkit.hh	Specifications of file name extensions
JFileRecorder.hh	Recording of objects on file according a format that follows from the file name extension
JFileScanner.hh
JHeadSet.hh
JLimit.hh	Auxiliaries for defining the range of iterations of objects
JMeta.hh	ROOT I/O of application specific meta data
JMonteCarloFileReader.hh
JMonteCarloFileSupportkit.hh
JMonteCarloFileWriter.hh
JMultipleFileSampler.hh
JMultipleFileScanner.hh	Scanning of objects from multiple files according a format that follows from the extension of each file name
JParallelFileScanner.hh	Parallel scanning of objects from a single file or multiple files according a format that follows from the file name extension
JRandomSampler.hh
JRunByRun.hh
JSingleFileScanner.hh	Scanning of objects from a single file according a format that follows from the extension of each file name
JSummaryFileRouter.hh
JSummaryRouter.hh
JSupport.hh	ROOT TTree parameter settings of various packages
JSupportToolkit.hh	Support methods
JTreeRecorder.hh
JTreeSampler.hh
JTreeScanner.hh
JTreeScannerInterface.hh
JTriggeredFileScanner.hh	Synchronously read DAQ events and Monte Carlo events (and optionally other events)
JTriggerParametersSupportkit.hh
► JSystem
getIPaddress.cc	Example program to print IP address
JDateAndTime.hh	Date and time functions
JFilesystem.hh
JGlob.hh	File list
JKeypress.hh	Keyboard settings for unbuffered input
JNetwork.hh	Hostname and IP address functions
JProcess.hh
JShell.hh	Shell interaction via I/O streams
JStat.hh	File status
JSysinfo.hh	System information
JSystemToolkit.hh	System auxiliaries
JTime.hh	System time information
JUTSName.hh	System information
► JTimeslice
JEventTimeslice.hh
JEventTimesliceWriter.cc	Auxiliary program to convert multiple Monte Carlo events to DAQ timeslices
JRandomTimeslice.hh
JRandomTimesliceWriter.cc	Auxiliary program to write KM3NETDAQ::JDAQTimeslice with random data
JRandomTimesliceWriter.sh
JRandomTimesliceWriterRunByRun.sh
JTimesliceL0.hh	Auxiliaries for creation of time slice data
► JTools
JAbstractCollection.hh
JAbstractHistogram.hh
JAbstractMultiMap.hh
JAngleRange.hh
JArray.hh
JArrayIterator.hh
JAssembler.hh
JAutoMap.hh
JCollection.hh	General purpose class for a collection of sorted elements
JCombinatorics.hh
JConstantFunction1D.hh
JConstants.hh	Constants
JDistance.hh
JDriver.hh
JElement.hh	The elements in a collection are sorted according to their abscissa values and a given distance operator
JFunction1D_t.hh
JFunctional.hh
JFunctionalMap.hh
JFunctionalMap_t.hh	Various implementations of functional maps
JFunctionObject1D.hh
JGarbageCollection.hh
JGrid.hh
JGridCollection.hh
JGridMap.hh
JHashCollection.hh	General purpose class for a hash collection of unique elements
JHashEvaluator.hh
JHashMap.hh	General purpose class for hash map of unique elements
JHashSet.hh	General purpose class for a hash set of sorted elements
JHermiteSpline.hh
JHesseMatrix.hh
JHistogram.hh
JHistogram1D.hh
JHistogram1D_t.hh
JHistogramMap.hh
JHistogramMap_t.hh
JList.hh
JMap.hh
JMapCollection.hh
JMapList.hh
JMappableCollection.hh
JMergeSort.hh
JMultiFunction.hh
JMultiGrid.hh
JMultiHashMap.hh	General purpose class for multidimensional hash maps
JMultiHistogram.hh
JMultiKey.hh
JMultiMap.hh	General purpose multidimensional map based on a type list of maps
JMultiMapTransformer.hh
JMultiPair.hh
JMultiPDF.hh
JMultipleMap.hh
JMultiSet.hh
JPair.hh
JPermutation.hh
JPolfit.hh
JPolint.hh
JQuadrature.hh	Auxiliary classes for numerical integration
JQuantile.hh
JQuantiles.hh
JRange.hh	Auxiliary class to define a range between two values
JResult.hh	This include file containes various data structures that can be used as specific return types for the interpolating methods
JResultTransformer.hh
JRouter.hh
JSelector.hh
JSet.hh
JSpline.hh
JTable2D.hh
JToolsToolkit.hh	This include file contains various recursive methods to operate on multi-dimensional collections
JTransformableMultiFunction.hh
JTransformableMultiHistogram.hh
JTransformer.hh
JTuple.hh	Data structure based on type list
JWeight.hh
► JTrigger
JAlgorithm.hh	Algorithms for hit clustering and sorting
JBind2nd.hh
JBuild.hh
JBuildHelper.hh
JBuildL0.hh
JBuildL1.hh
JBuildL2.hh
JCalibration.hh
JChecksum.cc	Example program to check KM3NETDAQ::JDAQTimeslice for errors
JChecksum.hh
JCLBRunByRunSimulator.hh
JClone.hh
JDAQHitSelector.hh
JDAQHitToTSelector.hh
JDOMToPMTMaskMap.hh
JEvent.hh
JEventOverlap.hh
JEventProcessor.sh
JEventToolkit.hh
JFrame.hh
JFrame_t.hh
JFrameClone.hh
JGetRiseTime.hh	Rise time evaluation
JHit.hh	Basic data structure for time and time over threshold information of hit
JHitL0.hh	Basic data structure for L0 hit
JHitL1.hh	Basic data structure for L1 hit
JHitL2.hh	Basic data structure for L2 hit
JHitR0.hh	Basic data structure for L0 hit
JHitR1.hh	Reduced data structure for L1 hit
JHitR2.hh	Basic data structure for R2 hit
JHitToolkit.hh	Tools for handling different hit types
JK40RunByRunSimulator.hh
JMatch.hh	Base class for match operations for cluster and hit-preprocessing methods
JMatch1D.hh	Match operator for Cherenkov light from muon with given direction
JMatch3B.hh	Match operator for Cherenkov light from muon in any direction
JMatch3D.hh	Match operator for Cherenkov light from muon in any direction
JMatch3G.hh	Match operator for Cherenkov light from shower in any direction
JMatchFixer.hh	Match fixer
JMatchL0.hh	Match operator for consecutive hits
JModuleCounter.hh
JModuleHeader.hh
JParametersHelper.hh
JPMTHeader.hh
JPMTIdentifier_t.hh
JPMTMask.hh
JPMTRunByRunSimulator.hh
JPMTSelector.hh
JPreprocessor.hh	Auxiliaries for pre-processing of hits
JPrescaler.hh
JPrintTriggerBits.cc	Auxiliary program to print trigger bits
JPrintTriggerParameters.cc	Auxiliary program to print trigger parameters
JRandomEvent.sh
JRandomEventRunByRun.sh
JSummaryRouter.hh
JSuperFrame1D.hh
JSuperFrame2D.hh
JSuperFrameClone1D.hh
JSuperFrameClone2D.hh
JTimeslice.hh
JTimesliceClone.hh
JTimesliceL1.hh
JTimesliceReprocessor.cc	Auxiliary program to re-process KM3NETDAQ::JDAQTimeslice data
JTimesliceRouter.hh
JTrigger3D.hh
JTrigger3DMuon.hh
JTrigger3DMuon_t.hh
JTrigger3DShower.hh
JTrigger3DShower_t.hh
JTrigger3N.hh
JTriggerBits.hh	Setting of trigger bits
JTriggeredEvent.hh
JTriggeredHit.hh
JTriggerEfficiency.cc	Auxiliary program to trigger Monte Carlo events
JTriggerEfficiency.sh
JTriggerEfficiencyRunByRun.sh
JTriggerException.hh
JTriggerInput.hh
JTriggerInterface.hh
JTriggerMonitor.cc	Auxiliary program to histogram and print trigger statistics
JTriggerMXShower.hh
JTriggerMXShower_t.hh
JTriggerNB.hh
JTriggerNB_t.hh
JTriggerOutput.hh
JTriggerParameters.cc
JTriggerParameters.hh
JTriggerProcessor.cc	Auxiliary program to trigger KM3NETDAQ::JDAQTimeslice data
JTriggerReprocessor.cc	Auxiliary program to re-trigger KM3NETDAQ::JDAQEvent data
JTriggerTester.cc	Auxiliary program to verify processing of Monte Carlo events
JTriggerTestkit.hh
JTriggerToolkit.hh
JTurbot.cc	Example program to search for correlations between triggered events and time slice data
LinkDef.hh
► JUTC
JUTCTimeRange.hh
► JUTM
JUTMGrid.hh
JUTMPosition.hh
► MonRouter
► src
monrouter.cpp
► scripts
archive-get-Detector.sh
archive-put-Detector.sh
archive-put-offline-detectors.sh
archive-put-online-detectors.sh
doxygen.sh
getMechanics.sh
gradient.sh
input-tables.sh
JXRootd.sh
make_movie.sh
qlib.csh
qlib.sh
run_tests.py