Jpp  master_rocky-40-g5f0272dcd
the software that should make you happy
File List
Here is a list of all files with brief descriptions:
 AAObject.hh
 AcousticDataFilter.cc
 AcousticDataFilter.h
 acoustics-diff.sh
 acoustics-Zmul.sh
 acoustics.sh
 Antares.hhProperties of Antares PMT and deep-sea water
 applications.hh
 applications.py
 applications.sh
 archive-get-calibration.sh
 archive-get-Detector.sh
 archive-input_data.sh
 archive-put-calibration.sh
 archive-put-Detector.sh
 archive-put-offline-detectors.sh
 archive-put-online-detectors.sh
 archive-put-pmt.sh
 archive-put-wiki-detectors.sh
 Ars.cc
 Ars.hh
 Audio_Structures.h
 classdef2code.cc
 clb_common_header.hh
 clb_datagram.cc
 clb_datagram.hh
 clb_replay.cpp
 clb_simu.cpp
 clb_swiss_knife.cpp
 software/JDetector/compare-detector.sh
 examples/JReconstruction/compare-detector.sh
 compass_D0ARCA006.sh
 compass_D0ARCA009.sh
 compass_D0ARCA020.sh
 compass_D0ARCA021.sh
 compass_D0ORCA007.sh
 compass_D0ORCA010.sh
 compass_D0ORCA011.sh
 compass_D0ORCA015.sh
 compass_D0ORCA018.sh
 compass_D1ORCA011.sh
 compass_D1ORCA013.sh
 compass_D1ORCA015.sh
 compass_D_ORCA006.sh
 configure.hh
 create_update_issues.py
 crypt.cc
 csv2code.cc
 csv2code.hh
 csv2cpp.cc
 csv2cpp.hh
 csv2julia.cc
 csv2julia.hh
 csv2python.cc
 csv2python.hh
 csv2shell.cc
 csv2shell.hh
 daq_common_header.hh
 daq_parser.cpp
 daqdatatypes.hh
 daqdatatypes.py
 daqdatatypes.sh
 darkroomCalibration.sh
 data_input_interface.hh
 datalogs.sh
 DataQueue.cc
 datatypes.cpp
 DataTypes.hh
 datatypespec.hh
 debug_abrt.hh
 detector-XY:fit.sh
 detector-XY:fit1d.sh
 detector-XY:plot.sh
 detector-XY:run.sh
 detector-Zmul+zoom:fit.sh
 detector-Zmul+zoom:run.sh
 detector-Zmul:fit.sh
 detector-Zmul:plot.sh
 detector-Zmul:run.sh
 DFInterface.cc
 DFInterface.hh
 diff-Tuna.sh
 dom_map.cpp
 DomCrossing.hh
 doxygen.sh
 dqdumpfile.hh
 dump_file.hh
 elog-version.h
 elog.cc
 elogd.h
 JAAnet/event_selector.cc
 JReconstruction/event_selector.cc
 EventPreamble.hh
 Evt.cc
 Evt.hh
 Exception.hh
 file-Tuna.sh
 fitparameters.hh
 fitparameters.py
 fitparameters.sh
 footprint-TxTy:plot.sh
 footprint-TxTy:run.sh
 footprint.sh
 frame.hh
 frame_farm.cc
 frame_farm.hh
 frame_generator.cc
 frame_generator.hh
 FramePreamble.hh
 get_convergence_angle.py
 get_convergence_angle.sh
 getAAnetFiles.ccAuxiliary program to select Monte Carlo files according generator
 getAPIV2.ccAuxiliary program to print APIV2 version
 getArchive.sh
 getCookie.ccAuxiliary program to print cookie file name
 getDetector.ccAuxiliary program to get serial number or object identifier of detector from database
 getFile.sh
 getFrameIndex.ccAuxiliary program to print frame index range of data taking run
 getGITTags.ccAuxiliary program to print GIT tags
 getIPaddress.ccExample program to print IP address
 getK40Rates.ccAuxiliary program to print K40 rates
 getLivetime.ccAuxiliary program to print live time of data taking
 getLivetime.sh
 getLocation.ccAuxiliary program to print module location for a given module identifier
 getLocationID.ccAuxiliary program to get location ID corresponding to given user login
 getLs.sh
 getMechanics.sh
 getMIIseacurrent.sh
 getModule.ccAuxiliary program to print module identifier for a given module location
 getModule.sh
 getModuleID.ccAuxiliary program to print module identifier for a given module location
 getModuleStatus.ccAuxiliary program to print module status for a given module identifier
 getNamespace.ccAuxiliary program to print name space
 getPMT.ccAuxiliary program to print PMT data for a given PMT channel or identifier
 getPMTStatus.ccAuxiliary program to print PMT status for a given PMT identifier
 getPoisson.ccAuxiliary program to print random a number according Poisson statistics or the Poisson probability
 getShell.ccExample program to print shell
 getTimestamp.cc
 getUserID.ccAuxiliary program to get user ID corresponding to given user login
 getUTC.ccAuxiliary program to print UTC start and stop time of data taking run
 getUUID.ccAuxiliary program to print UUID
 git-revision.h
 software/scripts/gradient.sh
 examples/scripts/gradient.sh
 gui.cpp
 gzstream.h
 Head.cc
 Head.hh
 Hit.hh
 hydrophone-phi:fit.sh
 hydrophone-phi:plot.sh
 hydrophone-phi:run.sh
 hydrophone-t0:fit.sh
 hydrophone-t0:plot.sh
 hydrophone-t0:run.sh
 hydrophone-XY:fit.sh
 hydrophone-XY:plot.sh
 hydrophone-XY:run.sh
 hydrophone-Z:fit.sh
 hydrophone-Z:plot.sh
 hydrophone-Z:run.sh
 include.ccAuxiliary program to check for include file within Jpp repository
 infoword.hh
 input-files.sh
 input-tables.sh
 input_buffer_collector.hh
 input_channel_handler.hh
 io.cc
 io_ascii.hh
 io_online.hh
 JAAnet.ccExample program to analyse track fit results from Evt formatted data
 JAAnet.sh
 JAAnetDynamics.ccExample program to monitor dynamical calibration of Evt formatted data
 JAAnetDynamics.sh
 JAAnetPreprocessor.ccAuxiliary program to preprocess an aanet file
 JAAnetTestkit.hh
 JAAnetToolkit.hhDefinition of hit and track types and auxiliary methods for handling Monte Carlo data
 JAAPostfit.ccExample program to analyse fit results from Evt formatted data
 JABCnet.ccExample program to read Monte Carlo events
 JAbstractClass.ccExample program to test JLANG::JAbstractClass class
 JAbstractClass.hh
 JAbstractCollection.hh
 JAbstractFile.hh
 JAbstractHistogram.hh
 JAbstractIO.hh
 JAbstractMedium.hh
 JAbstractMultiMap.hh
 JAbstractObjectIterator.hh
 JAbstractObjectReader.hh
 JAbstractObjectStatus.hh
 JAbstractObjectWriter.hh
 JAbstractPMT.hh
 JAbstractPointer.hh
 JAbstractSoundVelocity.hhAbstract sound velocity
 JAbstractStreamer.hhThis file contains the basic interface for ASCII I/O of ROOT objects
 JAcceptanceTest.sh
 JAccessible.hh
 JAccessibleBinaryStream.hh
 JAccessibleStream.hh
 JACoeffSource.hh
 JAcoustics.sh
 JAcousticsDisable.cc
 JAcousticsDisable.sh
 JAcousticsEventBuilder.ccMain program to trigger events in acoustic data
 JAcousticsEventBuilder.sh
 JAcousticsEventMonitor.ccExample program to monitor acoustic events
 JAcousticsEventMonitor.sh
 JAcousticsEventReader.ccExample program to process DAQ and acoustic events
 JAcousticsMonitor.ccExample program to monitor acoustic events
 JAcousticsMonitor.sh
 JAcousticsMonitor_short.ccExample program to monitor acoustic events rate per emitter and receiver and run
 JAcousticsMonitor_short.sh
 JAcousticsMonitorPeriod.sh
 JAcousticsMonitorTest.cc
 JAcousticsSupportkit.hhAcoustics support kit
 JAcousticsToolkit.hhAcoustics toolkit
 JAcousticsToolkit.sh
 JAcousticsTriggerMonitor.ccExample program to monitor acoustic events
 JAcousticsTriggerMonitor.sh
 JAcousticsTriggerProcessor.ccMain program to trigger acoustic data
 JAcousticsTriggerProcessor.sh
 JAddHDE.ccProgram to add 5-dimensional histograms of shower light
 JAddHDE.sh
 JAddHDF.ccProgram to add multi-dimensional histograms of muon light
 JAddHDG.ccProgram to add multi-dimensional histograms of shower light
 JAddPDF.ccAuxiliary program to add PDF tables of the arrival time of the Cherenkov light from a muon
 JAddPDF.sh
 JAddPDG.ccAuxiliary program to add PDF tables of the arrival time of the Cherenkov light from an EM-shower
 JAddPDG.sh
 JADF.sh
 JAHRS.hh
 JAHRS.sh
 JAHRSCalibration.ccAuxiliary program to store AHRS calibration data on local disk
 JAHRSCalibration.hh
 JAHRSCalibration.sh
 JAHRSCalibration_t.hh
 JAHRSCalibrationToolkit.hh
 JAHRSDetectorCalibration.hh
 software/JCompass/JAHRSMonitor.ccProgram to monitor AHRS data
 examples/JCompass/JAHRSMonitor.ccProgram to monitor AHRS data
 examples/JDB/JAHRSMonitor.ccProgram to plot AHRS data
 software/JCompass/JAHRSMonitor.sh
 examples/JCompass/JAHRSMonitor.sh
 examples/JDB/JAHRSMonitor.sh
 JAHRSToolkit.hh
 JAlgorithm.hhAlgorithms for hit clustering and sorting
 JAlignDetector.ccAuxiliary program to align two detectors
 JAlignDetector.sh
 JAllocator.ccAuxiliary program to test speed of JLANG::JObjectAllocator class
 JAllocator.hhAuxiliary class to speed up new/delete operations of any class
 JAllParams.hh
 JAnchor.hh
 JAngle2D.hh
 JAngle3D.hh
 JAngleRange.hh
 JAnglerFish.ccExample application to search for sets of consecutive hits on a given PMT,
that are separated in time by a constant value
 JAnglerFish.sh
 JAnyType.hh
 JARCACalibrateMuon.sh
 JARCAEnergyCorrection.sh
 JARCAMuonReconstruction.sh
 JArgs.hh
 JArray.ccExample program to test JTOOLS::JArray class
 JArray.hh
 JArrayIterator.hh
 JAsciiDB.ccAuxiliary program to convert data from data base into ASCII format
 JASCIIFileReader.hh
 JASCIIFileStreamer.hh
 JASCIIFileWriter.hh
 JAssembler.hh
 JAssert.hh
 JAstronomy.hhInterface methods for slalib and auxiliary classes and methods for astronomy
 JAstronomyToolkit.hh
 JAtmosphericNeutrinoFlux.ccExample program for printing the atmospheric neutrino fluxes for the events in a given neutrino MC-file
 JAtmosphericNeutrinoFlux.hh
 JAttachPMTs.ccAuxiliary program to attach PMTs to detector
 JAttenuationLength.ccAuxiliary program to plot attenuation length
 JAttenuationLength.sh
 JAutoMap.ccExample program to test JTOOLS::JAutoMap class
 JAutoMap.hh
 JAutoTreeScanner.hh
 JAutoTreeWriter.hh
 Jaws.ccExample program to search for spurious hits
 JAxis2D.hh
 JAxis3D.hh
 software/JCompass/JBallarat.ccAuxiliary program to process AHRS data
 examples/JDynamics/JBallarat.ccExample program to plot orientation data
 JBallarat.sh
 JBaseClass.ccExample program to test JLANG::JBaseClass class
 JBaseClass.hhAuxiliary class to identify common base class in type list
 JBaselineComputer.hh
 JBeaconSimulator.cc
 JBeaconSimulator.sh
 JBellhop.ccExample program for sound ray tracing
 JBellhop.sh
 JBidirectionalIterator.hh
 JBillabong.ccMain program to trigger acoustic data
 JBinaryFileReader.hh
 JBinaryFileWriter.hh
 JBinaryIO.hh
 JBind2nd.hh
 JBlurPDF.ccAuxiliary program to apply the transition time spread (TTS) of the PMTs to interpolation tables of PDFs
 JBool.ccExample program to test JLANG::JBool class
 JBool.hh
 JBufferedIO.hh
 JBuild.ccExample program to test JTRIGGER::JBuildL0, JTRIGGER::JBuildL1 and JTRIGGER::JBuildL2 hit building with DAQ events
 JBuild.hh
 JBuild.sh
 JBuildHelper.hh
 JBuildL0.hh
 JBuildL1.hh
 JBuildL2.hh
 JByteArrayIO.ccExample program to test JIO::JByteArrayReader and JIO::JByteArrayWriter
 JByteArrayIO.hh
 JCalculator.hh
 JCalibrateHeight.sh
 JCalibrateK40-PMT.sh
 JCalibrateK40.ccAuxiliary program to determine PMT parameters from K40 data
 JCalibrateK40.hh
 JCalibrateK40.sh
 JCalibrateMuon.ccProgram to perform detector calibration using reconstructed muon trajectories
 JCalibrateNB.cc
 JCalibrateOrientation.sh
 JCalibratePMT.sh
 JCalibratePosition.sh
 JCalibrateStrings.sh
 JCalibrateTime.sh
 JCalibrateToT.ccMonitoring of PMT time-over-threshold distributions
 JCalibrateToT.hh
 JCalibrateToT.sh
 JDB/JCalibration.hh
 JDetector/JCalibration.hhTime calibration (including definition of sign of time offset)
 JTrigger/JCalibration.hh
 JCanberra.ccExample program to plot acoustic fit results
 JCanberra.sh
 JCanvas.hh
 JCategory.hh
 JCC.hhCompiler version dependent expressions, macros, etc
 JCDFTable.hh
 JCDFTable1D.ccProgram to plot CDF of Cherenkov light from muon using interpolation tables
 JCDFTable1D.hh
 JCDFTable1D.sh
 JCDFTable2D.ccProgram to plot CDF of Cherenkov light from shower using interpolation tables
 JCDFTable2D.hh
 JCDFTable2D.sh
 JChainReader.hhTChain reading for template data type
 JCharge.ccExample program to histogram charge distributions
 JCharge.sh
 JChargeProbability.ccExample program to histogram charge probability distributions
 JChargeProbability.sh
 JCheckDetectorIntegration.ccAuxiliary program to check detector integration
 JCheckHV.ccAuxiliary program to check HV
 JCheckHV.sh
 JCheckK40.ccAuxiliary program to check t0's
 JCheckK40.sh
 software/JTrigger/JChecksum.ccExample program to check KM3NETDAQ::JDAQTimeslice for errors
 examples/JTrigger/JChecksum.ccExample program to histogram string and floor hits
 JChecksum.hh
 JChecksum.sh
 JCheckTriggerParameters.ccAuxiliary program to check trigger parameters in a given ROOT files against the values from the database
 JCheckTriggerParameters.sh
 JCircle2D.hh
 JClass.ccExample program to test JLANG::JClass class
 JClass.hh
 JClassDef.hh
 JClassStreamer.hh
 JCLB.ccAuxiliary program to convert raw CLB data to KM3NETDAQ::JDAQTimeslice data
 JCLBDefaultSimulator.hh
 JCLBDefaultSimulatorInterface.hh
 JCLBID.ccExample program for module identification
 JCLBID.hh
 JCLBMap.hh
 JCLBRunByRunSimulator.hh
 JCLBSimulator.hh
 JClient.cc
 JClient.hh
 JClientList.hh
 JClonable.ccExample program to test JLANG::JClonable class
 JClonable.hh
 JClone.hh
 JCluster.hh
 JClusterBuilder.ccExample program to demonstrate the usage of JClusterBuilder
 JClusterBuilder.hh
 JCollection.ccExample program to test JTOOLS::JCollection class
 JCollection.hhGeneral purpose class for a collection of sorted elements
 JColor.ccExample program to test JLANG::JColor class
 JColor.hhI/O coloring auxiliaries
 JColorFacet.cc
 JColorFacet.hh
 JCombinatorics.ccExample program to test combinatorics of pairs of indices (class JTOOLS::JCombinatorics)
 JCombinatorics.hh
 JCombinatoricsK40.ccAuxiliary program to project single PMT data from 2D histogram
 JComment.ccExample program to test file name handling using JEEP::JComment
 JComment.hh
 JCommunicator.hhSwitching on/off of standard and error output streams
 JComparable.ccExample program to test JLANG::JComparable class
 JComparable.hh
 JComparator.ccAuxiliary program to test JLANG::JComparator class and helper methods
 JLang/JComparator.hh
 JSon/JComparator.hh
 JCompareDetector.ccAuxiliary program to find differences between two detector files
 JCompareDetector.sh
 JCompareDynamicPositions.cc
 JCompareDynamics.sh
 JCompareKatoomba.ccExample program to compare acoustic fit results
 JCompareKatoomba.sh
 JComparison.hh
 JComparisonAvailable.ccExample program to test JLANG::JComparisonAvailable and JLANG::JComparable classes
 JComparisonAvailable.hh
 JComparisonToolkit.hh
 software/JCompass/JCompass.ccProgram to calibrate in situ AHRS
 examples/JDB/JCompass.ccExample program to monitor AHRS data of the first floor and check offsets vs detector file
 examples/JDetector/JCompass.ccExample compass operations
 JCompass.hh
 software/JCompass/JCompass.sh
 examples/JDB/JCompass.sh
 JCompassSupportkit.hhMeridian convergence angles for different sites
 JComplexPhase.hh
 JCompress.sh
 JConstantFlux.hh
 JConstantFunction1D.hh
 JMath/JConstants.hhMathematical constants
 JPhysics/JConstants.hhPhysics constants
 JTools/JConstants.hhConstants
 JConstructDetector.ccAuxiliary program to compose detector from separate calibrations
 JConstructor.ccExample program to test JLANG::JConstructor class
 JConstructor.hh
 JContainer.hhContainer I/O
 JControlHost.ccExample program to test JNET::JControlHost
 JControlHost.hh
 JControlHostLogger.hh
 JControlHostObjectIterator.ccExample program to test JNET::JControlHostObjectIterator
 JControlHostObjectIterator.hh
 JControlHostObjectOutput.hh
 JControlHostServer.hh
 JControlHostSSHTunnel.sh
 JConversion.ccExample program to test JLANG::JConversion class
 JConversion.hh
 JConversionIterator.hh
 JConvert.ccAuxiliary program to convert data formats and/or to select data
 JConvert.sh
 JConvertAcoustics.ccAuxiliary program to convert acoustic events
 JConvertAcoustics.sh
 JConvertDB.ccAuxiliary program to convert data from data base into ROOT format
 JConvertDB.sh
 JConvertDetectorFormat.ccAuxiliary program to convert format of detector files
 JConvertDetectorFormat.sh
 JConvertDusj.cc
 JConvertDusj.sh
 software/JReconstruction/JConvertEvt.ccAuxiliary program to convert fit results to Evt format
 examples/JDynamics/JConvertEvt.ccAuxiliary program to convert trigger files to Evt format
 JConvertEvt.sh
 JConvertFit.ccAuxiliary program to convert data formats
 JConvertToPDF1D.ccAuxiliary program to convert 1D histograms to PDFs
 JConvertToPDF2D.ccAuxiliary program to convert 2D histograms to PDFs
 JConvertToPDF3D.ccAuxiliary program to convert 3D histograms to PDFs
 JConvexHull2D.ccExample program to test convex hull and enclosing circle
 JCookie.sh
 JAcoustics/JCounter.hhAcoustic counter
 JROOT/JCounter.hhType definition for counter for ROOT TTree and auxiliary methods
 JCppFacet.cc
 JCppFacet.hh
 JCRC.ccExample program to test CRC evaluation (see JCRC.hh)
 JCRC.hh
 software/JAcoustics/JCreep.ccAuxialiry program to determine average creep of strings
 examples/JAcoustics/JCreep.ccAuxialiry program to determine average creep of strings
 JCreep.sh
 JCSV.ccExample program to test assignment of comma separated values (see JCSV.hh)
 JCSV.hhUtility method to assign multiple values to STD container
 JCSVPlot.sh
 JCylinder3D.ccExample program to test intersection of straight line with cylinder
 JCylinder3D.hh
 JDAQ.cc
 JDAQ.hhKM3NeT DAQ constants, bit handling, etc
 JDAQAbstractPreamble.cc
 JDAQAbstractPreamble.hh
 JDAQChronometer.hh
 JDAQChronometerIO.hh
 JDAQCHSM.cc
 JDAQCHSM.chsm
 JDAQCHSM.hh
 JDAQClient.hh
 JDAQClientStarter.ccAuxiliary program to start (remote) run control client
 JDAQClock.hh
 JDAQDataTypes.hh
 JDAQDemoClient.ccRun control demo client class
 JDAQDemoClient.sh
 JDAQDriver.ccRun control driver program
 JDAQDriver.hh
 JDAQDriver.sh
 JDAQEvaluator.ccProgram to print DAQ value used for sorting entries in ROOT TTree
 JDAQEvaluator.hh
 externals/km3net-dataformat/src/JDAQEvent.cc
 examples/JDAQ/JDAQEvent.ccExample program to analyse KM3NETDAQ::JDAQEvent
 JDAQEvent.hh
 JDAQEvent.sh
 JDAQEventHeader.hh
 JDAQEventHeaderIO.hh
 JDAQEventIO.hh
 JDAQException.hh
 JDAQFileReader.hh
 JDAQFileWriter.hh
 JDAQ/JDAQFilter.ccExample program to select events based on hits in strings
 JReconstruction/JDAQFilter.ccExample program to select events based on hits in strings
 JDAQFrame.hh
 JDAQFrameIO.hh
 JDAQFrameStatus.hh
 JDAQFrameStatusIO.hh
 JDAQHeader.hh
 JDAQHeaderIO.hh
 externals/km3net-dataformat/src/JDAQHit.cc
 examples/JTrigger/JDAQHit.ccExample program to count event data
 JDAQHit.hh
 JDAQHitIO.hh
 JDAQHitRouter.ccExample program to histogram string and floor hits
 JDAQHitRouter.hhDirect access to PMT data in detector data structure for DAQ hits
 JDAQHitRouter.sh
 JDAQHitSelector.ccExample program to test DAQ hit selection using JTRIGGER::JBuildL0
 JDAQHitSelector.hh
 JDAQHitToTSelector.hh
 JDAQKeyHit.cc
 JDAQKeyHit.hh
 JDAQKeyHitIO.hh
 JDAQModuleIdentifier.cc
 JDAQModuleIdentifier.hh
 JDAQModuleIdentifierIO.hh
 JDAQModuleRouter.ccExample program to histogram string and floor rates
 JDAQPMTIdentifier.cc
 JDAQPMTIdentifier.hh
 JDAQPMTIdentifierIO.hh
 JDAQPreamble.cc
 JDAQPreamble.hh
 JDAQPreambleIO.hh
 JDAQPrint.hh
 JDAQProfile.ccExample program to histogram various data profiles
 JDAQProfile.sh
 JDAQRoot.hh
 JDAQSizeof.hh
 JDAQSnapshot.ccProgram to plot snapshot data
 JDAQSplit.ccAuxiliary program to split DAQ data into multiple output files
 JDAQStatus.ccExample program to histogram KM3NETDAQ::JDAQSummaryslice
 JDAQSummaryFrame.cc
 JDAQSummaryFrame.hh
 JDAQSummaryFrameIO.hh
 JDAQSummaryslice.ccExample program to histogram KM3NETDAQ::JDAQSummaryslice
 JDAQSummaryslice.hh
 JDAQSummaryslice.sh
 JDAQSummarysliceHeader.hh
 JDAQSummarysliceHeaderIO.hh
 JDAQSummarysliceIO.hh
 JDAQSuperFrame.hh
 JDAQSuperFrameHeader.hh
 JDAQSuperFrameHeaderIO.hh
 JDAQSuperFrameIO.hh
 JDAQTags.hhFixed parameters and ControlHost tags for KM3NeT DAQ
 JDAQTestkit.hh
 externals/km3net-dataformat/src/JDAQTimeslice.cc
 examples/JDAQ/JDAQTimeslice.ccExample program to histogram KM3NETDAQ::JDAQTimeslice
 JDAQTimeslice.hh
 JDAQTimeslice.sh
 JDAQTimesliceHeader.hh
 JDAQTimesliceHeaderIO.hh
 JDAQTimesliceIO.hh
 JDAQTimesliceSelector.ccExample program to histogram KM3NETDAQ::JDAQTimeslice
 JDAQTimesliceSelector.sh
 JDAQToolkit.hh
 JDAQTriggerCounter.hh
 JDAQTriggerCounterIO.hh
 JDAQTriggeredHit.cc
 JDAQTriggeredHit.hh
 JDAQTriggeredHitIO.hh
 JDAQTriggerMask.hh
 JDAQTriggerMaskIO.hh
 JDAQUTCExtended.hh
 JDAQUTCExtendedIO.hh
 JDarkroomNB.cc
 JDatabaseObjectIterator.hh
 JDataFilter.ccApplication for real-time filtering of data
 software/JDataFilter/JDataFilter.sh
 examples/JDataFilter/JDataFilter.sh
 JDataFrame.hh
 JDatalog.hh
 JDatalogNumbers.hh
 JDatalogString.ccAuxiliary application to examine datalog file
 JDatalogString.hh
 JDataMonitor.ccAuxiliary program to plot data from data base or input file
 JDataMonitor.sh
 JDataPostfit.ccProgram to histogram fit results from reconstructed data
 JDataQuality.ccMain program to evaluate quality data from data base
 JDataQuality.sh
 JDataWriter.ccApplication for writing real-time data to disk
 software/JDataWriter/JDataWriter.sh
 examples/JDataWriter/JDataWriter.sh
 JDate.hh
 JDate_t.hh
 JDateAndTime.ccExample program to show system time
 JDateAndTime.hhDate and time functions
 JDatim_t.hh
 JDB.hh
 JDBincludes.hhThis file is automatically created by make
 JDBReader.hh
 JDBString.hh
 JDBSupportkit.cc
 JDBSupportkit.hh
 JDBToolkit.cc
 JDBToolkit.hh
 JDBTypes.hhThis file is automatically created by make
 JDefault.hh
 JDeltaRays.ccProgram to determine the energy loss due to visible delta-rays
 JDeltaRays.sh
 JDemoPDF.ccDemonstration program to plot RMS of arrival time of first hit as a function of the minimal distance of approach of a muon to the PMT
 JDependencies.ccExample program to test dependencies of include files
 JDependencies.sh
 JDepthDependence.ccAuxiliary program to find depth dependence of multiplicity rates
 JDestructDetector.ccAuxiliary program to decompose detector to separate calibrations
 JDetachPMTs.ccAuxiliary program to detach PMTs from detector
 JDetCalibrations.ccAuxiliary program to download default detector from database
 JDetCalibrations.hh
 JDetector.ccAuxiliary program to generate detector files
 JDetector.hhData structure for detector geometry and calibration
 JDetector.sh
 JDetectorAddressMap.hh
 JDetectorCalibration.hh
 JDetectorDB.ccAuxiliary program to download or update detector from database
 JDetectorHeader.hh
 JDetectorID.hh
 JDetectorIntegration.ccExample program to build detector from database
 JDetectorIntegration.hh
 JDetectorIntegration_t.hh
 JDetectorParameters.hh
 JDetectors.hh
 JDetectorSimulator.hh
 JDetectorSubset.hhAuxiliary class to extract a subset of optical modules from a detector
 JDetectorSupportkit.hhDetector support kit
 JDetectorToolkit.hh
 JDetectorVersion.hhData structure for detector version
 JDiffAcousticsEvent.ccProgram to compare acoustics event data
 JDiffAcousticsEvt.ccProgram to compare acoustics fit data
 JDiffPD0.ccAuxiliary program to compare PDF tables of the arrival time of the Cherenkov light from a bright point
 JDiffPDF.ccAuxiliary program to compare PDF tables of the arrival time of the Cherenkov light from a muon
 JDiffPDG.ccAuxiliary program to compare PDF tables of the arrival time of the Cherenkov light from a shower
 JDiffToA.ccProgram to compare toa data
 JDiffuseFlux.hh
 JDiffuseFluxHelper.hh
 JDirection2D.hh
 JDirection3D.hh
 JDIS.cc
 JDIS.hhDeep-inelastic muon-nucleon scattering
 JDIS.sh
 JDisable.ccAuxiliary program to disable acoustic sensors based on acoustic events
 JDispersion.hh
 JDispersionInterface.hh
 JDistance.hh
 JDistributer.ccExample program to distribute data through control host
 JDK.ccExample program to filter out-of-time hits in Evt data
 JDomAnalyser.cc
 JDOMDAQDriver.sh
 software/JSirene/JDomino.ccExample program to verify Monte Carlo data
 examples/JSirene/JDomino.ccExample program to verify Monte Carlo data
 JDomino.sh
 JDOMMap.ccAuxiliary program to create module map of PMT addresses
 JDOMToPMTMaskMap.hh
 JDQSimulator.ccProgram for real-time simulation of data queue
 JDrawDetector1D.ccAuxiliary program to draw the z-positions of the modules in detector
 JDrawDetector1D.sh
 JDrawDetector2D.ccAuxiliary program to draw the footprint of detector(s)
 JDrawDetector3D.ccAuxiliary program to draw the detector in 3D
 JDrawK40.ccAuxiliary program to draw K40 fit function
 JDrawLED.ccExample program to draw PDF from LED beacon
 JDrawLED.sh
 JDrawModule3D.ccAuxiliary program to draw a given module in 3D
 JDrawP5D.sh
 JDrawPD0.ccAuxiliary program to draw PDF of Cherenkov light from bright point
 JDrawPD0.sh
 JDrawPDE.ccAuxiliary program to draw PDF of Cherenkov light from EM-shower including shower profile
 JDrawPDF.ccAuxiliary program to draw PDF of Cherenkov light from muon
 JDrawPDF.sh
 JDrawPDG.ccAuxiliary program to draw PDF of Cherenkov light from EM-shower or scattered light from muon
 JDrawPDG.sh
 JDriver.hh
 JDST.ccExample program to select events from DST files
 JDynamics.ccExample program to apply dynamic position and orientation calibration
 JDynamics.hhDynamic detector calibration
 JDynamics.sh
 JEarth.ccMickey-mouse program to propagate neutrinos through the Earth
 JEarth.sh
 JEcho.ccAuxiliary program to echo (reverted) string
 JEditDetector.ccAuxiliary program to modify detector calibration
 JEditDisable.cc
 JEditEnergyCorrection.ccExample program to edit energy correction
 JEditHydrophone.ccAuxiliary program to modify hydrophone configuration
 JEditMechanics.ccAuxiliary program to add or modify mechanical model data of detector string
 JEditPMTParameters.ccAuxiliary program to edit PMT parameters map
 JEditProperties.ccGeneral purpose program to edit or create properties file
 JEditTransmitter.ccAuxiliary program to modify transmitter configuration
 JEditTripod.ccAuxiliary program to modify tripod configuration
 JEditTuneHV.ccAuxiliary program to treat failed HV-tuning calibrations
 JEditTuneHV.sh
 Jeep.ccExample program to test file name handling using Jeep/JeepToolkit.hh
 JeepToolkit.hhAuxiliary methods for handling file names, type names and environment
 JEffectiveMass1D.ccExample program to histogram neutrino effective mass for triggered events by counting events inside the can volume
 JEffectiveMassOffline1D.ccExample program to histogram neutrino effective mass for triggered events for offline reconstruction files, using the event weights only
 JEffectiveMassOnline1D.ccExample program to histogram neutrino effective mass for triggered events for online reconstruction files, using the event weights only
 JEigen2D.hh
 JEigen3D.hh
 JEigenValues2D.ccExample program to print eigen values in 2D
 JEigenValues2D.sh
 JEigenValues3D.ccExample program to print eigen values in 3D
 JEigenValues3D.sh
 JEKey.hhEmitter hash key
 JElement.hhThe elements in a collection are sorted according to their abscissa values and a given distance operator
 JEllipse.ccAuxiliary program to create TEllipse
 JEmitter.hhAcoustic emitter
 JEmitterID.hhEmitter identification
 JEMShower.ccAuxiliary program to draw npe as a function of EM-energy
 JEMShower.sh
 JEnergy.hh
 software/JReconstruction/JEnergyCorrection.ccUtility program to determine energy correction
 examples/JReconstruction/JEnergyCorrection.ccExample program to histogram energy corrections
 JEnergyCorrection.hh
 JEnergyCorrection.sh
 JEnergyRegressor.hhData regression method for JFIT::JEnergy
 JEnumeration.ccExample program to test JLANG::JEnumeration class
 JEnumeration.hh
 JEqualizer.ccExample program to equalize QE of PMTs based on summary data
 JEqualizer.sh
 JEquals.ccExample program to test JLANG::JComparible class
 JEquals.hh
 JEquation.ccExample program to test JLANG::JEquation class
 JEquation.hh
 JEquation.sh
 JEquation_t.hh
 JEquationFacet.hh
 JEquationParameters.hh
 JEstimator.hhLinear fit methods
 JEulerAngle3D.hh
 JEulerMatrix3D.hh
 JAAnet/JEvD.ccProgram to display hit probabilities
 JAcoustics/JEvD.ccProgram to display hit probabilities
 JReconstruction/JEvD.ccProgram to display hit probabilities
 JAAnet/JEvD.sh
 JAcoustics/JEvD.sh
 JReconstruction/JEvD.sh
 JAcoustics/JEvent.hhAcoustic event
 JTrigger/JEvent.hh
 JEvent_t.hh
 JEventGenerator.ccProgram for real-time simulation of data
 JAcoustics/JEventOverlap.hh
 JTrigger/JEventOverlap.hh
 JEventProcessor.sh
 JEventSelector.hh
 JEventShapeVariables.ccAuxiliary program to plot event shape variables
 JEventShapeVariables.hhEvent shape variables
 JEventTable.hh
 JEventTimeslice.hh
 JEventTimesliceWriter.ccAuxiliary program to convert multiple Monte Carlo events to DAQ timeslices
 JEventToolkit.hh
 JGizmo/JEvt.ccAuxiliary program for time sorting of Monte-Carlo events
 JReconstruction/JEvt.cc
 JAcoustics/JEvt.hhAcoustic event fit
 JCompass/JEvt.hhCompass event data types
 JReconstruction/JEvt.hh
 JEvtCategory.hh
 JEvtCategoryHelper.hh
 JEvtCategoryMap.hh
 JEvtCategoryToolkit.hh
 JEvtEvaluator.hh
 JEvtMerge.ccAuxiliary program for time sorting of Monte-Carlo events
 JEvtReweight.ccProgram for reweighting Monte-Carlo simulations
 JEvtReweightMupageParameterScan.sh
 JEvtReweightParameterScan.sh
 JEvtSplit.ccAuxiliary program for time sorting of Monte-Carlo events
 JAcoustics/JEvtToolkit.hhAcoustic event fit toolkit
 JCompass/JEvtToolkit.hhCompass event fit
 JReconstruction/JEvtToolkit.hh
 JEvtWeight.hh
 JEvtWeightCorsika.hh
 JEvtWeightDAQ.hh
 JEvtWeightFactor.hh
 JEvtWeightFactorConstant.hh
 JEvtWeightFactorFunction.hh
 JEvtWeightFactorGSeaGen.hh
 JEvtWeightFactorHelper.hh
 JEvtWeightFactorMupage.hh
 JEvtWeightFactorProduct.hh
 JEvtWeightFactorTFormula.hh
 JEvtWeightFileScanner.hh
 JEvtWeightFileScannerSet.hh
 JEvtWeightGenhen.hh
 JEvtWeightGSeaGen.hh
 JEvtWeightHelper.hh
 JEvtWeightInterface.hh
 JEvtWeightKM3BUU.hh
 JEvtWeightMiscellaneous.hh
 JEvtWeightMupage.hh
 JEvtWeightSupportkit.hh
 JEvtWeightToolkit.cc
 JEvtWeightToolkit.hh
 JException.hhExceptions
 JF1.ccAuxiliary program to write 1D ROOT function
 JF1.sh
 JF2.ccAuxiliary program to write 2D ROOT function
 JF2.sh
 JFFT.ccAuxiliary program to run fast Fourier transformation (FFT)
 JFFT.sh
 JFile.hh
 JFileDescriptorMask.hh
 JFileIO.hh
 JFilenameSupportkit.hhSpecifications of file name extensions
 JFileRecorder.hhRecording of objects on file according a format that follows from the file name extension
 JFileScanner.hh
 JFileStream.ccExample program to test JLANG::JFileStream class
 JFileStream.hh
 JFileStreamBuffer.hh
 JFileStreamIO.hh
 JFilesystem.hh
 JFileTuna.ccAuxiliary program to write test criteria to file
 JFilter.ccExample program to test performance of various hit filters based on JTRIGGER::clusterize method
 JFilter.sh
 JFind_if.ccAuxiliary program to test JLANG::JPredicate class and helper methods
 JFind_if.hh
 JFit.ccGeneral purpose fit program for 1D ROOT objects
 JFit2D.ccGeneral purpose fit program for 2D ROOT objects
 JFit3D.ccGeneral purpose fit program for 3D ROOT objects
 JFitEfficiency.ccExample program to histogram fit efficiency
 JFitK40.ccAuxiliary program to fit PMT parameters from JMergeCalibrateK40.cc output
 JFitK40.hh
 JFitL1dt.ccAuxiliary program to find the detector time offsets from FitL1dtSlices output
 JFitL1dt.sh
 JFitL1dtSlices.ccAuxiliary program to fit L1dt output data to an L1dt model, both created with JMonitorL1dt
 JFitMultiplicity.ccAuxiliary program to fit multiplicity rates from JMonitorMultiplicity output
 JFitNB.cc
 JFitParameters.cc
 JFitParameters.hhAcoustic fit parameters
 JFitSinglesRates.ccAuxiliary program to fit singles rate distributions
 JFitStatus.hhDefinition for fit results
 JFitToolkit.hhAuxiliary methods to evaluate Poisson probabilities and chi2
 JFitToT.ccAuxiliary program to fit time-over-threshold distributions
 JFitToT.hh
 JFitVolume.sh
 JFixedCan.ccAuxiliary program to shift the generated tracks according a given offset
 JFlux.hh
 JFluxHelper.hh
 JFluxMap.ccExample program for scanning event-weights of Monte Carlo files
using specifiable flux functions
 JFootprint.ccAuxiliary application to determine tilt angles of seabed based on measured tilt angles
 JFootprint.sh
 JForwardIterator.hh
 JFrame.hh
 JFrame_t.hh
 JFrameClone.hh
 JFremantle.ccApplication to make a global fit of the detector geometry to acoustic data
 JFremantle.sh
 JFremantle_t.cc
 JFremantle_t.hh
 JFrodo.ccFit time-slewing histogram in output of JCalibrateMuon.cc in calibration mode
 JFrodo.sh
 JFunction1D_t.hh
 JFunctionAdaptor.hh
 JFunctional.hh
 JFunctionalMap.hh
 JFunctionalMap_t.hhVarious implementations of functional maps
 JFunctionObject1D.hh
 JGandalf.hh
 JGandalfFitAlaMinuitToGauss.ccProgram to test JFIT::JGandalf algorithm
 JGandalfFitToGauss.ccProgram to test JFIT::JGandalf algorithm
 JGandalfFitToGauss.sh
 JGarbageCollection.hh
 JGauss.hh
 JGeane.ccExample program to histogram muon energy loss
 JGeane.hhEnergy loss of muon
 JGeane.sh
 JGeant.hhPhoton emission profile EM-shower
 JGeant_t.hhBase class for photon emission profile EM-shower
 JGeanx.ccExample program to histogram photon emission profile from showers using JPHYSICS::JGeanx
 JGeanx.hhPhoton emission profile EM-shower
 JGeanx.sh
 JGeanz.ccExample program to histogram longitudinal shower profile using JPHYSICS::JGeanz
 JGeanz.hhLongitudinal emission profile EM-shower
 JGeanz.sh
 JGedanken.ccAuxiliary program to generate particles
 JGedanken.sh
 JGENIETypes.hhDefinition of GENIE neutrino interaction types
 JGeometry.cc
 JGeometry.hhAcoustic geometries
 JGeometry.sh
 JGeometry2DTestkit.hh
 JGeometry2DToolkit.hh
 JGeometry3D.ccExample program to test rotations in 3D
 JGeometry3DTestkit.hh
 JGeometry3DToolkit.hh
 JGetData.ccAuxiliary program to receive messages from ControlHost server
 JGetInputTuneHV.ccProgram to create input data for HV-tuning
 JGetMessage.ccAuxiliary program to receive messages from ControlHost server
 JGetRiseTime.hhRise time evaluation
 JGetSmallestDistance2D.ccExample program to find smallest distance between two points
 JGetSmallestDistance3D.ccExample program to find smallest distance between two points
 JGinneken.cc
 JGinneken.sh
 JGITTags.cc
 JDataQuality/JGITTags.hhSelection of GIT tags
 Jeep/JGITTags.hhDates GIT tags
 JGizmo.sh
 JGizmoToolkit.hh
 JGlob.cc
 JGlob.hhFile list
 JGlobalfit.hhFit function of acoustic model
 JGlow.ccAuxiliary program to test simulation of L0 background
 JGradient.hh
 JGradientFitToGauss.ccProgram to test JFIT::JGradient algorithm
 JGraph.ccAuxiliary program to create TGraph from input file with ASCII data
 JGraph.hh
 JGraph.sh
 JGraph2D.ccAuxiliary program to create TGraph2D from input file with ASCII data
 JGraph2D.hh
 JGraph2D.sh
 JGraph2DErrors.hh
 JGraphErrors.hh
 JGrid.hh
 JGridCollection.hh
 JGridMap.hh
 JGroup.ccExample program to test JLANG::JGroup class
 JGroup.hh
 JGZFileReader.hh
 JGZFileWriter.hh
 JHalibut.ccExample program to determine N-fold coincidence rates
 JHashCollection.ccExample program to test JTOOLS::JHashCollection class
 JHashCollection.hhGeneral purpose class for a hash collection of unique elements
 JHashEvaluator.hh
 JHashMap.ccExample program to test JTOOLS::JHashMap class
 JHashMap.hhGeneral purpose class for hash map of unique elements
 JHashSet.ccExample program to test JTOOLS::JHashSet class
 JHashSet.hhGeneral purpose class for a hash set of sorted elements
 JHead.cc
 JHead.hh
 JHeadSet.ccExample program to organise of Monte Carlo run headers
 JHeadSet.hh
 JHeadToolkit.hh
 JHeadWriter.hh
 JHermiteSpline.hh
 JHesseMatrix.hh
 JHighRateVeto.ccExample program to print high-rate veto related quantities
 JHighRateVeto.hh
 JHistHDE.ccProgram to histogram event-by-event and track-by-track for making PDFs of lights of individual particles
 JHistHDE.sh
 JHistHDF.ccProgram to histogram event-by-event data of muon light for making PDFs
 JHistHDG.ccProgram to histogram event-by-event data of shower light for making PDFs
 JHistogram.hh
 JGizmo/JHistogram1D.ccProgram to create TH1D and fill according given formula
 JTools/JHistogram1D.ccExample program to test JTOOLS::JHistogram1D
 JHistogram1D.hh
 JGizmo/JHistogram1D.sh
 JTools/JHistogram1D.sh
 JHistogram1D_t.hh
 JGizmo/JHistogram2D.ccProgram to create TH2D and fill according given formula
 JTools/JHistogram2D.ccExample program to test JTOOLS::JMultiHistogram
 JGizmo/JHistogram2D.sh
 JTools/JHistogram2D.sh
 JGizmo/JHistogram3D.ccProgram to create TH2D and fill according given formula
 JTools/JHistogram3D.ccExample program to test JTOOLS::JMultiHistogram
 JGizmo/JHistogram3D.sh
 JTools/JHistogram3D.sh
 JHistogramMap.hh
 JHistogramMap_t.hh
 software/JReconstruction/JHistory.ccProgram to set fit status according match of history with list of application types
 examples/JReconstruction/JHistory.ccExample program to test application history
 JHistory.hh
 JAcoustics/JHit.hhAcoustic hit
 JCompass/JHit.hh
 JTrigger/JHit.hhBasic data structure for time and time over threshold information of hit
 JHitL0.hhBasic data structure for L0 hit
 JHitL1.ccExample program to determine time slewing of L1 hits
 JHitL1.hhBasic data structure for L1 hit
 JHitL1.sh
 JHitL2.hhBasic data structure for L2 hit
 JHitR0.hhBasic data structure for L0 hit
 JHitR1.hhReduced data structure for L1 hit
 JHitR2.hhBasic data structure for R2 hit
 JHitToolkit.hhTools for handling different hit types
 JHitW0.hh
 JHobbit.ccProgram to fit time-residuals histogram in output of JCalibrateMuon.cc
 software/JCalibrate/JHobbit.sh
 examples/JCalibrate/JHobbit.sh
 JHondaFluxInterpolator.ccExample program for plotting the atmospheric neutrino fluxes given by an azimuth-averaged Honda flux table
and comparing them with the atmospheric neutrino flux from the KM3NeT flux library
 JHondaFluxInterpolator.hh
 JHostname.hh
 JHVInterpolator.ccExample program to interpolate input high-voltage-gain data
 JHVInterpolator.hh
 JHydrophone.ccExample program to plot hydrophone data
 JHydrophone.hhData structure for hydrophone
 JHydrophone.sh
 JIonization.hh
 JIOToolkit.hhAuxiliary methods for binary I/O
 JK40.hh
 JK40DefaultSimulator.hh
 JK40DefaultSimulatorInterface.hh
 JK40Hit.hh
 JK40Rates.ccExample program to check background calculation
 JK40Rates.hh
 JK40RunByRunSimulator.hh
 JK40Simulator.hh
 JKaboom.cc
 software/JAcoustics/JKatoomba.ccApplication to make a global fit of the detector geometry to acoustic data
 examples/JAcoustics/JKatoomba.ccExample application to test fit of model to simulated acoustic data
 software/JAcoustics/JKatoomba.sh
 examples/JAcoustics/JKatoomba.sh
 JKatoomba_t.cc
 JKatoomba_t.hhFit functions of acoustic model
 JKexing.cc
 JKexing2D.cc
 JKexing2D.hh
 JKeypress.ccExample program to test key board pressings (class JSYSTEM::JKeypress)
 JKeypress.hhKeyboard settings for unbuffered input
 JLangToolkit.hh
 JLED.hh
 JLegend.hh
 JFit/JLegendre.ccExample program to test Legendre polynome
 JGeometry3D/JLegendre.ccExample program to test Legendre polynome
 JMath/JLegendre.ccExample program to test Legendre polynome
 JLegendre.hh
 JLegendreEstimator.hhLinear fit of JMATH::JLegendre
 JLegolas.ccAuxiliary program to model transition time distribution generator from data (e.g. output of JPulsar.cc)
 JLegolas.sh
 JLib.hh
 JLight.ccAuxiliary program histogram plot absorption and scattering lengths as well as dispersion
 JLight.sh
 JLightCurveBackgroundGenerator.hhThis file provides a class to emulate a L0 (L1) background on the ms time scale for an arbitrarily sized detector
 JLigier-local.sh
 JLigier.ccQuicksilver Messenger Service - a ControlHost server
 JLigier.sh
 JLigierMirror.ccA tool to forward messages with the given tags from one ControlHost server (e.g
 JLigierObjectIterator.ccExample program to test JNET::JLigierObjectIterator
 JLigierObjectIterator.hh
 JLimit.hhAuxiliaries for defining the range of iterations of objects
 JLimits.ccExample program to test zero values (JMATH::zero)
 JLimits.hhDefinition of minimum and maximum values for any class
 JLine.ccAuxiliary program to create TLine
 JLine1Z.ccTest program for JFIT::JEstimator<JLine1Z> fit
 JLine1Z.hh
 JLine1ZEstimator.hhLinear fit of JFIT::JLine1Z
 JLine3EZ.hh
 JLine3Z.hh
 JLine3ZRegressor.hhData regression method for JFIT::JLine3Z
 JLineAttributes.hh
 JList.hh
 JLocation.hhLogical location of module
 JLocation_t.hh
 JLocationRouter.hhDirect access to location in detector data structure
 jlog.cc
 JLogger.ccAuxiliary program to save logger messages from ControlHost server
 JLogger.hh
 software/JLogger/JLogger.sh
 examples/JLogger/JLogger.sh
 JLoggerMessage.hh
 JLorentzBoost.hhAuxiliary methods for calculating Lorentz boosts
 JLs.ccExample program to use JSYSTEM::ls
 JMACAddress.hhMAC address
 JMakeCDF.ccMain program to create table of CDFs from table of PDFs for Cherenkov light from muon
 JMakeCDG.ccMain program to create table of CDFs from table of PDFs for Cherenkov light from EM-shower
 JMakeHDE.ccProgram to convert 5-dimensional histograms of shower light to multi-dimensional PDFs
 JMakeHDE.sh
 JMakeHDF.ccProgram to convert multi-dimensional histograms of muon light to multi-dimensional PDFs
 JMakeHDF.sh
 JMakeHDG.ccProgram to convert multi-dimensional histograms of shower light to multi-dimensional PDFs
 JMakePD0.ccProgram to create interpolation tables of the PDF of the arrival time of the Cherenkov light from a bright point
 JMakePDE.ccProgram to create interpolation tables of the PDF of the arrival time of the Cherenkov light from a shower
 JMakePDF.ccProgram to create interpolation tables of the PDF of the arrival time of the Cherenkov light from a muon
 JMakePDF.sh
 JMakePDG.ccProgram to create interpolation tables of the PDF of the arrival time of the Cherenkov light from a shower
 JManager.ccExample program to test JGIZMO::JManager class
 JManager.hhDynamic ROOT object management
 JManip.ccExample program to test I/O manipulators
 JManip.hhI/O manipulators
 JMantisShrimp.ccProgram to compare root histograms
 JMap.hh
 JMapCollection.hh
 JMapList.hh
 JMappableCollection.hh
 JMarkerAttributes.hh
 JMarkovGenerator.hh
 JMarkovIntegrator.hh
 JMarkovPathDisplayer.cc
 JMarkovPathGenerator.cc
 JMarkovPathGenerator.hh
 JMarkovPathIntegrator.cc
 JMarkovPathReader.cc
 JMarkovPathSelecter.cc
 JMarkovPhotonTracker.hh
 JMassSquaredDifference.hh
 JMatch.ccExample program to plot match criterion
 JMatch.hhBase class for match operations for cluster and hit-preprocessing methods
 JMatch.sh
 JMatch1D.hhMatch operator for Cherenkov light from muon with given direction
 JMatch3B.hhMatch operator for Cherenkov light from muon in any direction
 JMatch3D.hhMatch operator for Cherenkov light from muon in any direction
 JMatch3G.hhMatch operator for Cherenkov light from shower in any direction
 JMatchFixer.hhMatch fixer
 JMatchL0.hhMatch operator for consecutive hits
 JMath.ccExample program to test user class with arithmetic capabilities (based on class JMATH::JMath)
 JMath.hhBase class for data structures with artithmetic capabilities
 JMathlib.hhFunctional algebra
 JMathlib2D.hhFunctional algebra in 2D
 JMathlib3D.hhFunctional algebra in 3D
 JMathSupportkit.ccTest application of consistency between ROOT and C++ or Jpp functions
 JMath/JMathSupportkit.hhAuxiliary methods for mathematics
 JROOT/JMathSupportkit.hh
 JMathTestkit.hh
 JMathToolkit.hhAuxiliary methods for geometrical methods
 JMatrix1D.hh
 JMatrix1S.ccExample program to test inversion of symmetric matrix
 JMatrix1S.hh
 JGeometry2D/JMatrix2D.hh
 JMath/JMatrix2D.hh
 JMatrix2S.ccExample program to test inversion of symmetric matrix
 JMatrix2S.hh
 JGeometry3D/JMatrix3D.hh
 JMath/JMatrix3D.hh
 JMatrix3S.ccExample program to test inversion of symmetric matrix
 JMatrix3S.hh
 JMatrix4D.hh
 JMatrix4S.ccExample program to test inversion of symmetric matrix
 JMatrix4S.hh
 JMatrix5D.hh
 JMatrix5S.ccExample program to test inversion of symmetric matrix
 JMatrix5S.hh
 JMatrix_sol.ccAuxiliary program to determine best inter-DU time offsets from hit time correlations
 JMatrixND.ccExample program to test matrix operations
 JMatrixND.hh
 JMatrixNS.ccExample program to test inversion of symmetric matrix
 JMatrixNS.hh
 JMatrixNZ.ccExample program to test chi2 calculations based on JFIT::JMatrixNZ
 JMatrixNZ.hh
 JMatrixNZ.sh
 JMechanics.ccAuxiliary application to fit mechanical constants
 JMechanics.hhMechanical modelling of string
 JMechanics.sh
 JMemory.hhBase class for memory management
 JMemoryUsage.ccExample program to show memory usage
 JMergeCalibrateK40.ccAuxiliary program to merge K40 data
 JMergeCalibrateToT.cc
 JMergeDetector.ccAuxiliary program to merge detector files
 JMergeDisable.cc
 JMergeEvt.ccApplication for merging Monte-Carlo files
 JMergeFit.ccProgram to merge different files with JFIT::JEvt data
 JMergeHydrophone.ccAuxiliary program to merge hydrophone files
 JMergeNB.cc
 JMergePDF.ccProgram to merge interpolation tables of muon light for PDFs
 JMergePDG.ccProgram to merge interpolation tables of shower light for PDFs
 JMergeRunAnalyzer.cc
 JMergeRunAnalyzer.sh
 JMergeSort.ccExample program to test performance of JTOOLS::JMergeSort
 JMergeSort.hh
 JMergeTimeOffsets.ccAuxiliary program to merge the time offsets of two detector files
 JMergeTransmitter.ccAuxiliary program to merge transmitter files
 JMergeTripod.ccAuxiliary program to merge tripod files
 JMergeTuneHV.ccAuxiliary program to merge multiple HV tuning calibrations
 JMermaid.ccExample program to monitor event duration
 JMessage.hhGeneral purpose messaging
 JMessageLogger.ccExample program to test message logging
 JMessageLogger.hhGeneral purpose message reporting
 JMessageScheduler.ccExample program to test message scheduling
 JMessageScheduler.hh
 JMessageStream.hhMessage reporting compatible with STL output stream operations
 JMEstimator.ccExample program to plot various M-Estimators
 JMEstimator.hhMaximum likelihood estimator (M-estimators)
 JMEstimator.sh
 JMeta.ccExample program to test JSUPPORT::JMeta class
 JMeta.hhROOT I/O of application specific meta data
 JMinimizer.hh
 JMixingAngle.hh
 JModel.cc
 JAcoustics/JModel.hhModel for fit to acoutsics data
 JCompass/JModel.hh
 JFit/JModel.hh
 JMath/JModel.hh
 JModK40.ccAuxiliary program to generate noise in Monte Carlo event
 software/JDetector/JModule.ccAuxiliary program to generate detector file with set of modules
 examples/JDetector/JModule.ccExample for determination of center of optical module
 JModule.hhData structure for optical module
 JModuleAddress.hh
 JModuleAddressMap.ccExample program to print PMT logical addressing
 JModuleAddressMap.hh
 JModuleComparator.hhAuxiliary classes to compare modules
 JModuleCounter.hh
 JModuleGeometry.hh
 JModuleHeader.hh
 JModuleIdentifier.hh
 JModuleMapper.ccExample program to test JDETECTOR::JModuleMapper
 JModuleMapper.hhMap of associated modules in detector
 JModuleMapper.sh
 JModuleRouter.hhDirect access to module in detector data structure
 JModuleStatus.hh
 JModuleStatusBits.ccExample program to test module status bits
 JModuleSupportkit.hhModule support kit
 JMonitorDOM.ccAuxiliary program to monitor optical module response
 JMonitorHV.sh
 JMonitorL1dt.ccAuxiliary program to plot L1 time difference correlations between DOMs
 JMonitorMultiplicity.ccAuxiliary program to analyse coincidence multiplicity;
 JMonitorSinglesRates.ccMonitoring of PMT time over threshold distributions
 JMonopole.ccExample program to analyse summary data
 JMonteCarloDetector.hh
 JMonteCarloFileReader.hh
 JMonteCarloFileSupportkit.hh
 JMonteCarloFileWriter.hh
 JMonteCarloFileWriter.sh
 JMultiComparable.ccExample program to test JLANG::JComparible class
 JMultiComparable.hh
 JMultiEquals.ccExample program to test JLANG::JMultiEquals class
 JMultiEquals.hh
 JMultiFunction.hh
 JMultiFunction1D.ccExample program to create 1D function interpolator from multi-dimensional interpolator
 JMultiFunction2D.ccExample program to create 2D function interpolator from multi-dimensional interpolator
 JMultiGrid.hh
 JMultiHashMap.hhGeneral purpose class for multidimensional hash maps
 JMultiHead.ccExample program to add MultiHead
 JMultiHead.hh
 JMultiHistogram.hh
 JMultiKey.ccExample program to test JTOOLS::JMultiKey class
 JMultiKey.hh
 JMultiMap.ccExample program to test JTOOLS::JMultiMap
 JMultiMap.hhGeneral purpose multidimensional map based on a type list of maps
 JMultiMapTransformer.hh
 JMultiPair.hh
 JMultiPDF.ccExample program to test conditional probability density function $P(x_0,x_1\|x_2,x_3)$ using JTOOLS::JMultiPDF and JTOOLS::JMultiFunction
 JMultiPDF.hh
 JMultiPDF.sh
 JMultipleFileSampler.hh
 JMultipleFileScanner.ccProgram to test parsing of JSUPPORT::JMultipleFileScanner
 JMultipleFileScanner.hhScanning of objects from multiple files according a format that follows from the extension of each file name
 JMultipleMap.hh
 JMultiplicityK40.ccExample program to calculate multiples rate
 JMultiplicityK40.sh
 JMultiPMT.ccAuxiliary program to determine L0 and L1 hit probability as a function of
 JMultiPMT.sh
 JMultiPointer.ccExample program to test JLANG::JMultiPointer class
 JMultiPointer.hh
 JMultiSet.hh
 JMuonBundleCategory.hhClasses and methods for defining muon bundle categories
 JMuonEnergy.ccProgram to perform JFIT::JRegressor<JEnergy, JGandalf> fit using I/O of JFIT::JEvt data
 JMuonEnergy.hh
 JMuonEnergyParameters_t.cc
 JMuonEnergyParameters_t.hh
 JMuonFeatures.ccProgram to perform JFIT::JRegressor<JFIT::JLine3Z,JFIT::JGandalf> fit with I/O of JFIT::JEvt data
 JMuonFeatures.hh
 JMuonGandalf.ccProgram to perform JFIT::JRegressor<JFIT::JLine3Z,JFIT::JGandalf> fit with I/O of JFIT::JEvt data
 JMuonGandalf.hh
 JMuonGandalfParameters_t.cc
 JMuonGandalfParameters_t.hh
 JMuonMCEvt.ccAuxiliary program to store Monte Carlo true muon in JFIT::JEvt format
 JMuonMCEvt.sh
 JMuonParameters.cc
 JMuonParameters.hh
 JMuonPath.ccProgram to perform JFIT::JRegressor<JLine3Z,JGandalf> fit with I/O of JFIT::JEvt data
 JMuonPath.sh
 JMuonPDF.ccProgram to evaluate hit probabilities
 JMuonPDF.sh
 JMuonPostfit.ccExample program to histogram fit results for the muon reconstruction chain
 JMuonPostfit.sh
 JMuonPrefit.ccProgram to perform linear fits JFIT::JEstimator<JFIT::JLine1Z> covering the solid angle producing JFIT::JEvt data
 JMuonPrefit.hh
 JMuonPrefitParameters_t.cc
 JMuonPrefitParameters_t.hh
 JMuonSelect.ccProgram to extract events based on muon reconstruction
 JMuonSimplex.ccProgram to perform JFIT::JRegressor<JFIT::JLine3Z,JFIT::JSimplex> fit with I/O of JFIT::JEvt data
 JMuonSimplex.hh
 JMuonSimplexParameters_t.cc
 JMuonSimplexParameters_t.hh
 software/JReconstruction/JMuonStart.ccProgram to perform JFIT::JRegressor<JEnergy> fit with I/O of JFIT::JEvt data
 examples/JReconstruction/JMuonStart.ccProgram to test JMuonStart.cc
 JMuonStart.hh
 JMuonStart.sh
 JMuonStartParameters_t.cc
 JMuonStartParameters_t.hh
 JMuonVeto.ccProgram to determine veto of muon trajectory
 JMutex.cc
 JMutex.hhVery basic lock facilities to be used in multithreaded programs
 JNanobeacon.hh
 JNarrabri.ccExample program to check contents of acoustic events
 JNarrabri.sh
 JNetwork.ccExample program to print IP address
 JNetwork.hhHostname and IP address functions
 JNeutrino.ccExample program to histogram neutrino interaction cross sections
 JNeutrino.hh
 JNeutrino.sh
 JNeutrinoInteractionCategory.hhClasses and methods for defining neutrino interaction categories
 JNOAA.ccExample program to plot NOAA functions
 JNOAA.hh
 JNOAA.sh
 JNPE.ccAuxiliary program to print number of photo-electrons
 JNPE.hh
 JNPE_t.hhAuxiliary data structure for muon PDF
 JNPEHit.hh
 JNPETable.hh
 JNullStream.ccExample program to test JANG::JFileSream and JLANG::JNullStream classes
 JNullStream.hh
 JNullStreamBuffer.hh
 JNullType.hh
 JLang/JNumber.hh
 JMath/JNumber.hhDefinition of number value for any class
 JObject.ccExample program to test JLANG::JObject class
 JObject.hh
 JObjectAllocator.hhAuxiliary base class to speed up new/delete operations of any class
 JObjectBinaryIO.hh
 JObjectDemultiplexer.ccExample program to test JLANG::JObjectMultiplexer and JLANG::JObjectDemultiplexer classes
 JObjectDemultiplexer.hh
 JObjectID.hh
 JObjectIO.hhGeneral methods for loading and storing a single object from and to a file, respectively
 JObjectIterator.ccExample program to test JLANG::JObjectIterator class
 JObjectIterator.hh
 JObjectMultiplexer.hh
 JObjectOutput.ccExample program to test JLANG::JObjectOutput class
 JObjectOutput.hh
 JObjectReader.ccExample program to test JLANG::JObjectReader class
 JObjectReader.hh
 JObjectReader.sh
 JObjectSampler.hh
 JObjectSelector.hh
 JObjectStatus.hh
 JObjectStreamIO.hh
 JObjectWriter.ccExample program to test JLANG::JObjectWriter class
 JObjectWriter.hh
 JOffset_extract.ccAuxiliary program to extract string-string correlation information from the output created with JMonitorL1dt
 JOmega2D.ccExample program to test JGEOMETRY2D::JOmega2D class
 JOmega2D.hh
 JOmega2D.sh
 JOmega3D.ccExample program to test JGEOMETRY3D::JOmega3D class
 JOmega3D.hh
 JOmega3D.sh
 JOMGsim.ccAuxiliary program to determine PMT parameters from OMGSim data
 JOMGsim.sh
 JOpera1D.ccAuxiliary program for operations on 1D histograms
 JOpera2D.ccAuxiliary program for operations on 2D histograms
 JOpera3D.ccAuxiliary program for operations on 3D histograms
 JOperationsRunMonitor.sh
 JOperationsRunQuality.sh
 JORCACalibrateMuon.sh
 JORCAMuonReconstruction.sh
 JORCAShowerReconstruction.sh
 JOscChannel.hh
 JOscFlux.hh
 JOscillogram.hh
 JOscParameter.hh
 JOscParameters.hh
 JOscParametersHelper.hh
 JOscParametersInterface.hh
 JOscProbFunction.hh
 JOscProbHelper.hh
 JOscProbInterface.hh
 JOscProbInterpolator.hh
 JOscProbToolkit.hh
 JPair.hh
 JParallelFileScanner.hhParallel scanning of objects from a single file or multiple files according a format that follows from the file name extension
 JParameter.hh
 JParameters.hh
 JParametersHelper.hh
 JParramatta.ccExample program to plot acoustic fit results
 JParramatta.sh
 JParser-string.ccExample program to test JPARSER::JParser
 JParser-string.sh
 JParser.ccExample program to test JPARSER::JParser
 JParser.csh
 JParser.hhUtility class to parse command line options
 JParser.sh
 JParticleTypes.hhDefinition of particle types
 JPBS_t.hh
 JPBSSequence.hh
 JPDB.hh
 JPDF.hh
 JPDF_t.hhAuxiliary data structure for muon PDF
 JPDFTable.hh
 JPDFToolkit.hhAuxiliary methods for PDF calculations
 JPDFTransformer.hh
 JPDFTypes.hhNumbering scheme for PDF types
 JPermutation.ccExample program to test permutations (JTOOLS::next_permutation)
 JPermutation.hh
 JPermutation.sh
 JPersons.hh
 JPerth.ccProgram to determine inter-string time calibration
 JPerth.sh
 JPhotonPath.hh
 JPhotonPathIO.cc
 JPhotonPathReader.hh
 JPhotonPathWriter.hh
 JPhysicsSupportkit.hh
 JPhysicsToolkit.hhAuxiliary methods for physics calculations
 JPipe.ccExample program to test JLANG::JPipe class
 JPipe.hhImplementation of pipe operation for object iterators
 JPizza.ccExample program to verify generator data
 JPizza.sh
 JPlatypus.ccApplication to make a global fit of the detector geometry to acoustic data
 JPlatypus.sh
 JPlatypus_t.cc
 JPlatypus_t.hh
 JPlot1D.ccGeneral purpose plot program for 1D ROOT objects
 JPlot2D.ccGeneral purpose plot program for 2D ROOT objects
 JPlotCDF.ccProgram to verify generation of arrival times of Cherenkov photons from a muon using tabulated CDF
 JPlotCDF.sh
 JPlotCDG.ccProgram to verify generation of arrival times of Cherenkov photons from a shower using tabulated CDF
 JPlotCDG.sh
 JPlotDetectorParameters2D.ccAuxiliary application to plot detector parameters
 JPlotK40.ccAuxiliary plot fit function of JFitK40.cc
 JPlotK40.sh
 JPlotNPE-PDG.ccProgram to compare integrals of PDF of Cherenkov light from EM-shower using interpolation tables
 JPlotNPE-PDG.sh
 JPlotNPE.ccProgram to plot PDF of Cherenkov light from EM-shower using interpolation tables
 JPlotNPE.sh
 JPlotNPE1D.ccProgram to plot PDF of Cherenkov light from EM-shower using interpolation tables
 JPlotNPE1D.sh
 JPlotOscillogram.ccExample program to plot oscillogram
 JPlotP5D.sh
 JPlotPD0.ccProgram to plot PDF of Cherenkov light from bright point using interpolation tables
 JPlotPD0.sh
 JPlotPDF.ccProgram to plot PDF of Cherenkov light from muon using interpolation tables
 JPlotPDF.sh
 JPlotPDF_L1.cc
 JPlotPDF_L1.sh
 JPlotPDG.ccProgram to plot PDF of Cherenkov light from EM-shower or scattered light from muon using interpolation tables
 JPlotPDG.sh
 JDB/JPlotPMTParameters.ccAuxiliary application to plot PMT parameters as a function of variant
 JDetector/JPlotPMTParameters.ccAuxiliary application to plot PMT parameters
 JPlotPMTParameters2D.ccAuxiliary application to plot PMT parameters
 JPlotPMTSystematics.ccAuxiliary application to convert PMT parameters text file to ROOT histograms
 JPlotZebraMantis.ccAuxiliary application to plot Run by Run comparisons
 JPMT-PDF.sh
 JPMT.ccAuxiliary program to plot QE and angular acceptance of PMT
 JPMT.hhData structure for PMT geometry and calibration
 JPMT.sh
 JPMTAddress.hh
 JPMTAnalogueSignalProcessor.hhPMT analogue signal processor
 JPMTAngularAcceptance.cc
 JPMTAngularAcceptance.sh
 JPMTBestHVSettings.hh
 JPMTChannel.hhData structure to uniquely identify PMT readout channel
 JPMTDefaultSimulator.hh
 JPMTDefaultSimulatorInterface.hh
 JPMTHeader.hh
 JPMTHV.ccUtility program to print PMT HV settings
 JPMTHV.hh
 JPMTHVRunSettings.hh
 JPMTHVSettings.hh
 JPMTIdentifier.hh
 JPMTIdentifier_t.hh
 JPMTMask.hh
 JPMTParameters.hh
 JPMTParametersMap.ccExample program to create PMT parameters map
 JPMTParametersMap.hh
 JPMTParametersToolkit.hh
 JPMTPhysicalAddress.hh
 JPMTRateRange.hh
 JPMTReadoutAddress.hh
 JPMTRouter.ccExample program to determine speed of JDETECTOR::JPMTRouter
 JPMTRouter.hhDirect access to PMT in detector data structure
 JPMTRouter.sh
 JPMTRunByRunSimulator.hh
 JPMTRunsetupParams.hh
 JPMTSelector.hh
 JPMTSignalProcessor.ccExample program to test PMT signal processor probability
 JPMTSignalProcessorInterface.hh
 JPMTSimulator.ccExample program to histogram PMT simulator features
 JPMTSimulator.hh
 JPMTSimulator.sh
 JPMTStatus.ccAuxiliary program to update the PMT status in the detector file based on the fraction of short time-over-threshold values
 JPMTStatus.hh
 JPMTStatus.sh
 JPMTStatusBits.ccExample program to test PMT status bits
 JPMTSwapDB.ccAuxiliary program to check HV
 software/JDB/JPMTThreshold.ccAuxiliary program to set PMT thresholds according DAQ configuration of a given data taking run
 examples/JDB/JPMTThreshold.ccAuxiliary program to print run setup parameters from the database
 JPMTThreshold.hh
 JPMTTransitTimeGenerator.hh
 JPMTTransitTimeProbability.hh
 JPMTTTS.ccAuxiliary program to set TTS function identifier in PMT parameters file according PMT variant
 JPMTW0.hh
 JPoint3D.ccTest program for JFIT::JEstimator<JPoint3D> fit
 JPoint3D.hh
 JPoint3DEstimator.hhLinear fit of JFIT::JPoint3D
 JPoint4D.ccTest program for JFIT::JEstimator<JPoint4D> fit
 JPoint4D.hh
 JPoint4DEstimator.hhLinear fit of JFIT::JPoint4D
 JPoint4DRegressor.hh
 JPoint4E.hh
 JPointer.hh
 JPolfit.hh
 JPolfit1D.ccExample program to test 1D Legendre interpolation of a polynome
 JPolicy.ccExample program to test policy method for missing module data
 JPolicy.hhPolicy for invalid modules
 JPolint.hh
 JPolyline3D.ccExample program for the JGEOMETRY::JPolyline3D class
 JPolyline3D.hh
 JPolynome.ccExample program to test polynome
 JPolynome.hh
 JPolynome1D.ccExample program to test 1D interpolation of a polynome
 JPolynome1D.sh
 JPolynome1P.ccExample program to test 1D interpolation of a polynome
 JPolynome3D+2D.ccExample program to test multi-dimensional interpolation with multi-dimensional function objects
 JPolynome3D.ccExample program to test multi-dimensional interpolation
 JPolynome3G.ccExample program to test multi-dimensional integration
 JPolynome3H.ccExample program to test multi-dimensional interpolation with derivatives
 JPolynome5D.ccExample program to test multi-dimensional interpolation
 JPosition2D.hh
 JPosition3D.hh
 JPostfit2F.ccExample program to compare fit results from two files
 JPostfit2F.sh
 JPower.hh
 JPowerLawFlux.hh
 Jpp.cc
 Jpp.hhJpp environment information
 JPredicate.ccAuxiliary program to test JLANG::JPredicate class and helper methods
 JPredicate.hh
 JPrefix.hh
 JPreprocessor.ccExample program to test JTRIGGER::JPreprocessor
 JPreprocessor.hhAuxiliaries for pre-processing of hits
 JPreprocessor.sh
 JPrescaler.hh
 JPrimitiveTypes.hhType list of primitive data types
 software/JGizmo/JPrint.ccAuxiliary program to print 'any' data
 examples/Jeep/JPrint.ccExample program to test print auxiliaries
 JPrint.hhI/O formatting auxiliaries
 JPrintAAnet.ccExample program to print track fit results from Evt formatted data
 JPrintAcousticsEvent.ccExample application to print acoustics event
 JPrintAHRSCalibration.ccExample program for compass calibration
 JPrintAttenuationLength.ccAuxiliary program to print attenuation length
 JPrintAxisLabel.ccAuxiliary program to print axis label of ROOT objects
 JPrintChain.ccAuxiliary program to print ROOT TChain information
 JPrintChain.sh
 JPrintChi2.ccAuxiliary program to print chi2/NDF of acoustic events
 JPrintDAQHeader.ccAuxiliary program to print DAQ header data
 JPrintDataQuality.ccMain program to print quality data from data base
 JPrintDB.ccAuxiliary program to print data from data base
 JPrintDetector.ccAuxiliary program to print detector file in human friendly format
 JPrintDetector.sh
 JPrintDomino.ccAuxiliary program to print JDomino.cc statistics
 JPrintDynamics.ccExample program to print dynamic detector calibration
 JPrinter.hh
 JPrintEvt.cc
 JPrintFit.ccAuxiliary program to print ROOT fit results
 JPrintHeader.ccAuxiliary program to print contents of summed Monte Carlo run headers
 JPrintHeader.sh
 JPrintHeaderFromFilelist.sh
 JPrintHelper.ccExample program to test JLANG::JPrintHelper class
 JPrintHelper.hh
 JPrintHydrophone.ccAuxiliary program to print hydrophone configuration
 JPrintK40Rates.sh
 JPrintLargestOverlay.ccExample program to find the largest event in a file
 JPrintMaximum1D.ccAuxiliary program to print (x) of the maximum of 1D ROOT objects
 JPrintMaximum2D.ccAuxiliary program to print (x,y) of the maximum of 2D ROOT objects
 JPrintMechanics.ccAuxiliary program to print mechanical constants
 JPrintMeta.ccAuxiliary program to print Jpp meta data
 JPrintMultiHeader.ccAuxiliary program to print Monte Carlo run headers
 JPrintName.ccAuxiliary program to print name of ROOT objects
 JPrintOscProb.ccExample program to print oscillation probabilities interpolated in energy and zenith-angle
 JPrintPDB.ccAuxiliary program to print particle codes and masses
 JPrintPDE.ccProgram to print PDF of Cherenkov light from elongated EM-shower
 JPrintPDF.sh
 JPrintPDG.sh
 JPrintPMTParameters.ccAuxiliary program to print PMT parameters
 software/JDB/JPrintPMTThreshold.ccAuxiliary program to print PMT thresholds
 examples/JCalibrate/JPrintPMTThreshold.ccAuxiliary program to print PMT thresholds
 JPrintProperties.ccGeneral purpose program to print properties file
 JPrintQuantiles.ccAuxiliary program to print quantiles from ROOT histograms or graphs
 JPrintRandom.ccAuxiliary program to print ROOT TRandom seed
 JPrintRange1D.ccAuxiliary program to print the ranges of x and y values of 1D ROOT objects
 JPrintRange2D.ccAuxiliary program to print the ranges of x, y and z values of 2D ROOT objects
 JPrintRange3D.ccAuxiliary program to print the ranges of x, y, z and c values of 3D ROOT objects
 JPrintResult.ccAuxiliary program to print result from ROOT objects
 JPrintRootClass.ccAuxiliary program to print ROOT class information
 JPrintRootVersion.ccAuxiliary program to print ROOT class version information
 JPrintRootVersion.sh
 JPrintRunsetup.ccAuxiliary program to print run setup data
 JPrintRunsetup.sh
 JPrintSirene.ccAuxiliary program to print JSirene.cc job statistics
 JPrintTDC.sh
 JPrintTestResults.ccAuxiliary program to print histogram comparison results
 JPrintTitle.ccAuxiliary program to print title of ROOT objects
 JPrintTree.ccAuxiliary program to print ROOT TTree information
 JPrintTree.sh
 JPrintTreeParameters.ccAuxiliary program to print ROOT TTree parameters
 JPrintTreeScanner.ccProgram to test ordered reading using JSUPPORT::JTreeScanner
 JPrintTriggerBits.ccAuxiliary program to print trigger bits
 software/JTrigger/JPrintTriggerParameters.ccAuxiliary program to print trigger parameters
 examples/JDB/JPrintTriggerParameters.ccAuxiliary program to print trigger parameters
 JPrintTuna.ccAuxiliary program to print slow control parameters
 JPrintTuneHV.ccAuxiliary program to print HV-tuning output
 JProcess.ccExample for testing inter-process communication
 JProcess.hh
 JProcess.sh
 JProcessKexing2D.ccAuxiliary program to build supernova background from JKexing2D output
 JProductIntegration.hh
 JProductRouter.hh
 JProfile2D.ccAuxiliary program to profile 2D histograms
 JProfiler.ccAuxiliary program to monitor memory and CPU usage of process
 JProject2D.ccAuxiliary program to project 2D histograms
 JProject3D.ccAuxiliary program to project 3D histograms
 JProperties-sed.ccExample program to test JPROPERTIES::JProperties class
 JProperties-setValue.ccExample program to test JPROPERTIES::JProperties class
 JProperties.ccExample program to test JPROPERTIES::JProperties class
 JProperties.hhUtility class to parse parameter values
 JProperties.sh
 JPulsar.ccApplication for dark room time calibration using external laser
 JPulsar.sh
 JPulse.hhTime-over-threshold (ToT) pulse from a PMT
 JPutData.ccAuxiliary program to send messages to ControlHost server
 JPutMessage.ccAuxiliary program to send message to ControlHost server
 JPythia.ccAuxiliary program histogram plot EM-equivalent energy for hadrons
 JPythia.hh
 JPythia.sh
 JQAQC.sh
 JQuadrature.ccExample program to test JTOOLS::JQuadrature
 JQuadrature.hhAuxiliary classes for numerical integration
 JQuality.ccAuxiliary program to sum fit quality
 JQuantile.ccExample program to test JTOOLS::JQuantile calculation
 JQuantile.hh
 JQuantile_t.hh
 JQuantiles.ccExample program to test JTOOLS::JQuantiles calculation of a function
 JQuantiles.hh
 JQuantiles1D.ccAuxiliary program to print quantiles from 1D histogram
 JQuantiles2D.ccAuxiliary program to extract quantiles from 2D histogram
 JQuaternion3D.hh
 JRadiation.ccExample program to histogram radiation cross sections, shower energy, range and b(E) as a function of the muon energy
 JRadiation.hhMuon radiative cross sections
 JRadiation.sh
 JRadiationFunction.hh
 JRadiationSource.hh
 JRAM.hhAuxiliary class to speed up new/delete operations of any class
 JRandom.hhDefinition of random value generator
 JRandomEvent.sh
 JRandomEventRunByRun.sh
 JRandomL1.ccExample program to test JTRIGGER::JBuildL1 and JTRIGGER::JBuildL2 hit coincidence building with random data
 JRandomL1.sh
 JRandomSampler.hh
 JRandomTimeslice.hh
 software/JTimeslice/JRandomTimesliceWriter.ccAuxiliary program to write KM3NETDAQ::JDAQTimeslice with random data
 examples/JTimeslice/JRandomTimesliceWriter.ccExample program to test generation of KM3NETDAQ::JDAQTimeslice with random data
 software/JTimeslice/JRandomTimesliceWriter.sh
 examples/JTimeslice/JRandomTimesliceWriter.sh
 JRandomTimesliceWriterRunByRun.sh
 JRandomToAWriter.ccAuxiliary program to write random acoustic data
 JRange.ccExample program to test JTOOLS::JRange operations
 JRange.hhAuxiliary class to define a range between two values
 JRange_t.hh
 JRate.ccExample program to plot event rates using JASTRONOMY::JStarTrek
 JRate.sh
 JRateK40.ccExample program to calculate singles rate
 JReaderObjectIterator.hh
 JRebin1D.ccAuxiliary program to rebin ROOT histograms
 JRecalibrateK40.sh
 JReceiver.hhAcoustic receiver
 JReconstructDetector.sh
 JRedirectStream.ccExample program to test JLANG::JRedirectStream class
 JRedirectStream.hh
 JRedirectString.ccExample program to test JLANG::JRedirectString class
 JRedirectString.hh
 JReference.ccExample program to test JLANG::JReference class
 JReference.hh
 JRegressor.hhGeneral purpose data regression method
 JRegressorHelper.hh
 JRegulator.hh
 JRegurgitate.ccAuxiliary program to send objects to JLigier.cc server
 JRegurgitate.sh
 JRemovePMT.ccExample program to remove PMT(s) from data (and set corresponding rate to 0)
 JReplyMessage.hh
 JResolve.ccTest of class JLANG::JResolve
 JResolve.hh
 JResult.hhThis include file containes various data structures that can be used as specific return types for the interpolating methods
 JResultHesse3D.ccExample program to test multi-dimensional interpolation
 JResultPDF.ccExample program to test interpolations for PDF
 JResultPDF.sh
 JResultTitle.hh
 JResultTransformer.hh
 JRewindable.hh
 JRipple.cc
 JRipple.hh
 JRoot.ccAuxiliary program to convert binary data to ROOT formatted data
 JRoot.hhThis include file serves the purpose of hiding ROOT dependencies and circumphere namespace problems when using rootcint
 JRootAddress.hh
 JRootClass.ccProgram to test JROOT::JRootClass
 JRootClass.hh
 JROOTClassSelector.hh
 JRootDB.ccAuxiliary program to convert ASCII data from data base into ROOT format
 JRootDictionary.hh
 JRootDictionary_t.hh
 JRootFile.hh
 JRootFileReader.hh
 JRootFileWriter.hh
 JRootFit.ccProgram to test ROOT fit
 JRootfit.hh
 JRootFitToGauss.ccProgram to test ROOT fit
 JRootfitToGauss.ccProgram to test JRootfit algorithm
 JRootFitToGauss.sh
 JRootfitToGauss.sh
 JRootfitToGauss2D.ccProgram to test JRootfit algorithm
 JRootfitToGauss2D.sh
 JRootfitToGauss3D.ccProgram to test JRootfit algorithm
 JRootfitToGauss3D.sh
 JRootLabel.hh
 JRootObject.hh
 JRootObjectID.hh
 JRootPrimitiveTypes.hh
 JRootPrinter.hhPrint objects in ASCII format using ROOT dictionary
 JRootStreamer.hhASCII I/O of objects with ROOT dictionary
 JRootStreamObjectOutput.hh
 JRootSupportkit.hhData type dependent action methods for customised ROOT version management
 JRootTestkit.hh
 JRootToolkit.hh
 JRose.ccExample program to plot compass fit results
 JRose.sh
 JRotation2D.hh
 JRotation3D.hh
 JRotator2D.hh
 JRotator3D.hh
 JRouter.ccExample program to test JTOOLS::JRouter class
 JRouter.hh
 JRunAnalyzer.cc
 JRunAnalyzer.hh
 JRunAnalyzer.sh
 JRunByRun.hh
 JRunCalibration.ccAuxiliary program to download official detector
 JRunCalibration.hh
 JRunCalibration.sh
 JRuncontrolToolkit.hh
 JRunHistograms.hh
 JRunInfo.hh
 JRunQuality.cc
 JRunQuality.hh
 JRunrange.sh
 JRuns.ccExample program to print run related data from data base
 JRuns.hh
 JRuns.sh
 JRunsetupParams.hh
 JRunsetups.hh
 JRunsetups.sh
 JRunSummaryNumbers.hh
 JSampler.ccProgram to test sampling of summary data using the JSUPPORT::JMultipleFileSampler class
 JSampler.hh
 JScale.ccExample program to test JEEP::JScale_t enumeration
 JScale.hhEnumeration for scaling of quantity
 JScale1D.ccAuxiliary program to scale ROOT histograms
 JScatteringModel.hh
 software/JAcoustics/JSeabed.ccAuxiliary application to apply tilt angles to seabed
 examples/JAcoustics/JSeabed.ccAuxiliary application to determine tilt angles of seabed based on tripod positions
 JSeaWater.hh
 JSegment2D.hh
 JSegment3D.hh
 JSelect.hh
 JSelectEvt.ccProgram to extract events
 JDB/JSelector.hh
 JTools/JSelector.hh
 JSelectorSupportkit.hh
 JSelectReader.hh
 JSelectWriter.hh
 JSeparateCuts.ccProgram for extracting disjoint output files without overlapping cuts
from a list of Monte-Carlo files with overlapping cuts
 JSerialisable.hh
 JServerDB.ccAuxiliary program to print host name of data base server
 JServerSocket.hh
 JSet.hh
 JSetize.ccExample program to test JLANG::make_set method
 JShadowPDF.sh
 JSharedCounter.hh
 JSharedPointer.ccExample program to test JLANG::JSharedPointer class
 JSharedPointer.hh
 JShell.ccExample program to test shell I/O (class JSYSTEM::JShell)
 JShell.hhShell interaction via I/O streams
 JShellParser.ccAuxiliary program to interface JPARSER::JParser to command line of shell scripts
 JShellParser.csh
 JShellParser.sh
 JShower3D.hh
 JShower3E.hh
 JShower3EY.hh
 JShower3EZ.hh
 JShower3EZRegressor.hhData regression method for JFIT::JShower3EZ
 JShower3Z.hh
 JShowerBjorkenY.ccProgram to perform Shower Bjorken Y Fit for ORCA with I/O of JFIT::JEvt data
 JShowerBjorkenY.hh
 JShowerBjorkenYParameters_t.cc
 JShowerBjorkenYParameters_t.hh
 JShowerBjorkenYRegressor.hhData regression method for JFIT::JShowerEH
 JShowerBrightPointRegressor.hhData regression method for JFIT::JPoint4E from a bright point isoptropic emission PDF
 JShowerDirectionPrefit.ccProgram to perform EM Shower Fit for ORCA with I/O of JFIT::JEvt data
 JShowerDirectionPrefit.hh
 JShowerDirectionPrefitParameters_t.cc
 JShowerDirectionPrefitParameters_t.hh
 JShowerEH.hh
 JShowerEnergyCorrection.hh
 JShowerEnergyRegressor.hhData regression method for JFIT::JShower3EZ only focused on the energy estimation from a bright point emission PDF and considering the hit/non hit information for each PMT
 JShowerFit.ccProgram to perform EM Shower Fit for ORCA with I/O of JFIT::JEvt data
 JShowerFit.hh
 JShowerFitParameters_t.cc
 JShowerFitParameters_t.hh
 JShowerMCEvt.ccAuxiliary program to store Monte Carlo information from a neutrino or the primary electron in JFIT::JEvt format
 JShowerMCEvtSmear.ccAuxiliary program to store Monte Carlo information from a neutrino or the primary electron in JFIT::JEvt format and smear the values of the position and time around a sphere of 4D - length
 JPhysics/JShowerNPE.ccProgram to plot PDF of Cherenkov light from EM-shower using interpolation tables
 JReconstruction/JShowerNPE.ccProgram to evaluate hit probabilities
 JShowerNPE.hh
 JPhysics/JShowerNPE.sh
 JReconstruction/JShowerNPE.sh
 JShowerNPEHit.hh
 JShowerParameters.cc
 JShowerParameters.hh
 JShowerPointSimplex.ccProgram to perform EM Shower Fit for ORCA with I/O of JFIT::JEvt data
 JShowerPointSimplex.hh
 JShowerPointSimplexParameters_t.cc
 JShowerPointSimplexParameters_t.hh
 JShowerPositionFit.ccProgram to perform EM Shower Second Position Fit for ORCA with I/O of JFIT::JEvt data
 JShowerPositionFit.hh
 JShowerPositionFitParameters_t.cc
 JShowerPositionFitParameters_t.hh
 JShowerPostfit.ccExample program to histogram shower fit results: it handles both neutrino and muon productions
 JShowerPostfit.sh
 JShowerPrefit.cc
 JShowerPrefit.hh
 JShowerPrefitParameters_t.cc
 JShowerPrefitParameters_t.hh
 JShowStat.ccAuxiliary program to send show status message to JLigier.cc - ControlHost server
 JSignalL1.ccExample program to test JTRIGGER::JBuildL1 and JTRIGGER::JBuildL2 hit coincidence building with Monte Carlo events
 JSignalL1.sh
 JSignalToAWriter.ccAuxiliary program to write signal acoustic data
 JSimbad.ccExample program to simulate summary data
 JSimplex.hh
 JSimplexFitArray.ccProgram to test JFIT::JSimplex algorithm
 JSimplexFitToGauss.ccProgram to test JFIT::JSimplex algorithm
 JSimplexFitToGauss.sh
 JSingleFileScanner.hhScanning of objects from a single file according a format that follows from the extension of each file name
 JSinglePointer.ccExample program to test JLANG::JSinglePointer class
 JSinglePointer.hh
 JSingleton.ccExample program to test JLANG::JSingleton class
 JSingleton.hh
 JSirene.ccMain program to simulate detector response to muons and showers
 JSirene.hh
 JSirene.sh
 JSireneToolkit.hhToolkit for JSirene
 JSize.ccExample program to test JLANG::getSize method
 JSlewing.ccExample program to histogram time over threshold as a function of number of photo-electrons
 JSlewing.sh
 JSlewingK40.ccAuxiliary program to determine time slewing from K40 data
 JSlewingK40.sh
 JSocket.hhBase class for interprocess communication
 JSocketAddress.hh
 JSocketBlocking.hh
 JSocketChannel.hh
 JSocketNonblocking.hh
 JSocketStatus.hh
 JSon.ccAuxiliary program to print 'any' data in JSON format
 JSon.hh
 JSonDetector.ccAuxiliary program to decompose detector to separate calibrations
 JSonDiff.ccAuxiliary program to compare (part of) JSon files
 JSonObjectOutput.hh
 JSonPrint.ccAuxiliary program to print (part of) JSon files
 JSonSupportkit.hh
 JSortEvt.ccExample program for sorting and merging Monte-Carlo files with compatible headers
 JSoundVelocity.hhSound velocity
 JSpark.ccExample program to check for sparks
 JSpark.sh
 JSpectrum.ccAuxiliary program to generate spectrum for fast Fourier transformation
 JSphere3D.ccExample program to test 3D integration of sphere
 JSphere3D.hh
 JSphereND.ccExample program to test integration of sphere in any number of dimensions
 JSpline.hh
 JSplitEvt.ccApplication for splitting an offline file in two parts,
one containing all even-numbered events, another containing all odd-numbered events
 JSquid.ccExample program to histogram string and floor time difference
 JSquid.sh
 JStack1D.ccAuxiliary program to make stack of ROOT histograms
 JStart.hhAuxiliary method to locate start and end point of muon trajectory
 JStat.ccExample program to print status of file
 JStat.hhFile status
 JStatic.ccExample program to test JLANG::JStatic class
 JStatic.hh
 JStatus.hh
 JStdev1D.ccAuxiliary program to determine standard deviation of a set of 1D histograms
 JSTDevK40.cc
 JSTDevK40.sh
 JSTDIO.hhSTD extensions for binary I/O
 JSTDObjectIterator.hh
 JSTDObjectOutput.hh
 JSTDObjectReader.ccExample program to test JLANG::JSTDObjectReader class
 JSTDObjectReader.hh
 JSTDObjectWriter.ccExample program to test JLANG::JSTDObjectWriter class
 JSTDObjectWriter.hh
 JSTDToolkit.hh
 JSTDTypes.hhForward declarations of STD containers
 JStingray.ccAuxiliary program to manipulate MUPAGE data
 JStopDAQ.sh
 JStorage.ccExample program to test JLANG::JStorage class
 JStorage.hh
 JStreamAvailable.ccExample program to test JLANG::JStreamAvailable class
 JStreamAvailable.hh
 JStreamIO.hh
 JStreamLogger.hh
 JStreamObjectIterator.hh
 JStreamObjectOutput.hh
 JStreamState.hh
 JStreamToolkit.hh
 JString.ccExample program to test JLANG::JString class
 JString.hh
 JStringCounter.hh
 JStringFacet.cc
 JStringFacet.hh
 JStringRouter.hhDirect access to string in detector data structure
 JStringStream.hh
 JStyle.hh
 JSubscription.ccExample program to test JNET::JSubscription
 JSum1D.ccAuxiliary program to make cumulative ROOT histogram
 JSummary.ccAuxiliary program to blend and write summary data
 JSummary.sh
 JSummaryFileRouter.ccProgram to test JSUPPORT::JSummaryFileRouter
 JSummaryFileRouter.hh
 JSummaryMonitor.ccAuxiliary program to monitor summary data
 JSupport/JSummaryRouter.hh
 JTrigger/JSummaryRouter.hh
 JSummaryslice.hhAuxiliaries for creation of summary data
 JSummaryWriter.ccAuxiliary program to write summary data
 JSummaryWriter.sh
 JSuperEvt.hhAcoustic event fit
 JSuperEvtToolkit.hhAcoustic super event fit toolkit
 JSuperFrame1D.hh
 JSuperFrame2D.hh
 JSuperFrameClone1D.hh
 JSuperFrameClone2D.hh
 JSupernova.hh
 JSupernovaProcessor.ccOnline supernova processor
 JSupernovaProcessor.hh
 JAAnet/JSupport.hhROOT TTree parameter settings
 JAcoustics/JSupport.hhROOT TTree parameter settings
 JAntares/JSupport.hhROOT TTree parameter settings
 JCompass/JSupport.hhROOT TTree parameter settings
 JDAQ/JSupport.hhROOT TTree parameter settings
 JDB/JSupport.hhROOT TTree parameter settings
 JSon/JSupport.hhJSon definitions and auxiliaries
 JSupport/JSupport.hhROOT TTree parameter settings of various packages
 JSupportToolkit.hhSupport methods
 JSVD3D.cc
 JSVD3D.hh
 JSwitch.hh
 JSwordfish.ccExample program to resize coordinate system of Monte Carlo events
 JSydney.ccApplication to perform acoustic pre-calibration
 JSydney.sh
 JSysinfo.ccExample program to print system information
 JSysinfo.hhSystem information
 JSystemToolkit.hhSystem auxiliaries
 JTable2D.ccExample program to test interpolation between 2D tables
 JTable2D.hh
 JTag.hhControlHost tag
 JTCPSocket.hh
 JTDC.ccAuxiliary program to determine TDC constraints (input to JFitK40.cc) according HV settings from the database
 JTDC.sh
 JTDC_t.hh
 JTemplate.ccExample program to test JLANG::JTemplate class
 JTemplate.hhAuxiliary class to alleviate the diamond problem due to multiple inheritance
 JTemplateIO.ccExample program to test JLANG::JTemplateReader and JLANG::JTemplateWriter classes
 JTemplateReader.hh
 JTemplateWriter.hh
 JTest.hh
 JTest_t.hh
 JTestChi2.ccAuxiliary program for chi2 test of 1D histograms
 JTestChi2.hh
 JTestChi2_Bin.hh
 JTestChi2_Slice2D.hh
 JTestDictionary.hh
 JTestFit.ccAuxiliary program to test ROOT fit results
 JTestIdentical.hh
 JTestKolmogorov_1D.hh
 JTestKolmogorov_2D.hh
 JTestKolmogorov_Slice2D.hh
 JTestL1.ccExample program to test JTRIGGER::JBuildL1 and JTRIGGER::JBuildL2 hit coincidence building with user data
 JTestPoissonLogLikelihoodRatio.hh
 JTestPoissonLogLikelihoodRatioBeestonBarlow.hh
 JTestRange1D.ccAuxiliary program to test contents of of 1D histograms
 JTestRange2D.ccAuxiliary program to test contents of 2D histograms
 JTestRange3D.ccAuxiliary program to test contents of 3D histograms
 JTestResult.hh
 JTestRuns_1D.hh
 JTestRuns_Slice2D.hh
 JTestSignificance.hh
 JTestSummary.hh
 JTestTuna.ccAuxiliary program to apply test criteria to file
 JTestZero.hh
 JText.ccAuxiliary program to create TText
 JThetaMCS.cc
 JThetaMCS.sh
 JThrow.hhException handling
 JTime.ccExample program to show system time
 Jeep/JTime.hh
 JGeometry3D/JTime.hh
 JSystem/JTime.hhSystem time information
 JTime_t.hh
 JTimeConverter.ccExample program to test conversion between Monte Carlo and DAQ times
 JTimeConverter.sh
 JTimekeeper.ccExample program to test JEEP::JTimekeeper class
 JTimekeeper.hhScheduling of actions via fixed latency intervals
 JTimer.hh
 JAcoustics/JTimeRange.hh
 JDetector/JTimeRange.hh
 JFit/JTimeRange.hh
 JPhysics/JTimeRange.hh
 JTimeslice.hh
 JTimesliceClone.hh
 JTimesliceL0.hhAuxiliaries for creation of time slice data
 JTimesliceL1.hh
 JTimesliceReprocessor.ccAuxiliary program to re-process KM3NETDAQ::JDAQTimeslice data
 JTimesliceReprocessor.sh
 JTimesliceRouter.hh
 JTimeval.hh
 JTitle.hh
 software/JAcoustics/JToA.ccAuxiliary program to convert acoustics data from data base into ROOT format
 examples/JAcoustics/JToA.ccExample program to test acoustic data
 JToA.hhAcoustic event
 software/JAcoustics/JToA.sh
 examples/JAcoustics/JToA.sh
 JToAImp.cc
 JToAMonitor.ccExample program to monitor acoustic events
 JToAshort.hh
 JToAshortMonitor.ccExample program to monitor "toashort" data
 JAcoustics/JToAshortMonitor.sh
 JDB/JToAshortMonitor.sh
 JToken.ccExample program to test JLANG::JToken class
 JToken.hh
 JToken.sh
 JToolsToolkit.hhThis include file contains various recursive methods to operate on multi-dimensional collections
 JTop.ccAuxiliary program to continually monitor processes
 JToT.ccExample program to histogram time over threshold distributions
 JToT.sh
 JToTProbability.ccExample program to histogram time-over-threshold probability distributions
 JToTProbability.sh
 JTrack3D.ccExample program to test angle of incidence of a photon from a muon on a PMT
 JTrack3D.hh
 JTrack3E.hh
 JTrack3EY.hh
 JTransceiver.hhAcoustic transceiver
 JTransformableFunction.ccExample program to test transformable function
 JTransformableMultiFunction.hh
 JTransformableMultiHistogram.hh
 JTransformation3D.hh
 JTransformer.hh
 JTransitTime.ccExample program to histogram PMT transit time distribution
 JTransitTime.sh
 JTransitTime2D.ccExample program to histogram PMT 2D transit-time distribution
 JTransitTime2D.sh
 JTransitTimeGenerator.ccExample program to test generation of transit times using PMT simulator
 JTransitTimeGenerator.sh
 JTransitTimeProbablity.ccExample program to determine PMT transit time probability
 JTransmission.hhAcoustic transmission
 JTransmission_t.hhAcoustic transmission identifier
 JTransmitter.hhData structure for transmitter
 JTreeBranchAddresses.hh
 JTreeIterator.ccProgram to test iteration using JSUPPORT::JTreeScanner
 JTreeIterator.sh
 JTreeParameters.hh
 JTreeReader.hhTTree reading for template data type
 JTreeReaderObjectIterator.hh
 JTreeRecorder.ccProgram to test ordered reading using JSUPPORT::JTreeRecorder
 JTreeRecorder.hh
 JTreeSampler.hh
 JTreeScanner.ccProgram to test ordered reading using JSUPPORT::JTreeScanner
 JTreeScanner.hh
 JTreeScanner.sh
 JTreeScannerInterface.hh
 JTreeWriter.hhTTree writing for template data type
 JTreeWriterObjectOutput.hh
 JTrigger3D.hh
 JTrigger3DMuon.hh
 JTrigger3DMuon_t.hh
 JTrigger3DShower.hh
 JTrigger3DShower_t.hh
 JTrigger3N.hh
 JTriggerBits.hhSetting of trigger bits
 JTriggeredEvent.hh
 JTriggeredEventsOnly.ccAuxiliary program to select number of DAQ events
 JTriggeredFileScanner.hhSynchronously read DAQ events and Monte Carlo events (and optionally other events)
 JTriggeredHit.hh
 JTriggerEfficiency.ccAuxiliary program to trigger Monte Carlo events
 JTriggerEfficiency.sh
 JTriggerEfficiency1D.ccExample program to histogram trigger efficiency
 JTriggerEfficiency1D.sh
 JTriggerEfficiency2D.ccExample program to histogram trigger efficiency
 software/JTrigger/JTriggerEfficiencyRunByRun.sh
 examples/JTrigger/JTriggerEfficiencyRunByRun.sh
 JTriggerException.hh
 JTriggerInput.hh
 JTriggerInterface.hh
 JTriggerMask.ccExample program to test I/O of trigger mask
 JTriggerMonitor.ccAuxiliary program to histogram and print trigger statistics
 JTriggerMXShower.hh
 JTriggerMXShower_t.hh
 JTriggerNB.hh
 JTriggerNB_t.hh
 JAcoustics/JTriggerOutput.hh
 JTrigger/JTriggerOutput.hh
 software/JAcoustics/JTriggerParameters.cc
 software/JTrigger/JTriggerParameters.cc
 examples/JTrigger/JTriggerParameters.ccExample program to read trigger parameters
 JAcoustics/JTriggerParameters.hhAcoustic trigger parameters
 JTrigger/JTriggerParameters.hh
 JTriggerParametersSupportkit.hh
 JTriggerProcessor.ccAuxiliary program to trigger KM3NETDAQ::JDAQTimeslice data
 JTriggerProcessor.sh
 JTriggerProfiler.sh
 JTriggerReprocessor.ccAuxiliary program to re-trigger KM3NETDAQ::JDAQEvent data
 JTriggerReprocessor.sh
 JTriggerTester.ccAuxiliary program to verify processing of Monte Carlo events
 JTriggerTestkit.hh
 JTriggerToolkit.hh
 JTrigonometric.hh
 JTrigonometric1D.ccExample program to test 1D interpolation of a trigonometric function
 JTripod.hhData structure for tripod
 JTTS.ccAuxiliary program to model transition time distribution generator from data
 JTTS.sh
 JTuna.ccAuxiliary program to convert slow control data from the database to ROOT TTree
 JTuna.sh
 JTuna2Graph.ccAuxiliary program to convert ROOT TTree with slow control data to ROOT TGraph's
 JTuneHV.ccProgram for inter-/extrapolation of nominal high-voltage settings
 JTuneHV.sh
 JTunePMTThreshold.ccAuxiliary program to compute the PMT thresholds according to the small time-over-threshold fraction
 JTunePMTThreshold.sh
 JTuple.ccExample program to test JTOOLS::JTuple class
 JTuple.hhData structure based on type list
 JTurbot.ccExample program to search for correlations between triggered events and time slice data
 JTurbot.sh
 JTurbot2D.ccExample program to search for out of sync shifts around integral timeslices evolving over time
 JTurbot2D.sh
 JTurbotIter.ccExample program to search for correlations between triggered events and timeslice data
 JTurbotIter.sh
 JTwist.cc
 JTwist.sh
 JTwosome.hh
 JType.hh
 JTypedef.ccExample program to test JLANG::JTypedef class
 JTypeID.hh
 JTypeInfo.hh
 JTypeList.ccExample program to test JLANG::JTypeList class
 JTypeList.hh
 JTypeSelector.hh
 JUDPSocket.hh
 JUNESCO.hhSound velocity according UNESCO equation
 JUPI.hh
 JUPI_t.hh
 JUTCProfile.ccExample program to histogram UTC profiles
 JUTCProfile.sh
 JUTCTimeRange.hh
 JUTMGrid.hh
 JUTMPosition.hh
 JUTSName.hhSystem information
 JUUID.ccExample program to test UUID
 JUUID.hh
 JValue.hh
 JValve.hh
 JVariance1D.ccAuxiliary program to histogram bin-by-bin deviations of the contents of one (or more) 1D histogram(s)
 JVariance2D.ccAuxiliary program to histogram bin-by-bin deviations of the contents of one (or more) 1D histogram(s)
 JVector2D.hh
 JVector3D.hh
 JVectorize.ccExample program to test JLANG::make_array method
 JVectorize.hhAuxiliary methods to convert data members or return values of member methods of a set of objects to a single vector
 JVectorND.hh
 JVectorNZ.hh
 JVendorHV.hh
 JDetector/JVersion.hh
 Jeep/JVersion.hh
 JVersor2D.hh
 JVersor3D.hh
 JVersor3Z.hh
 JVertex3D.hh
 JVisibleEnergyToolkit.hhAuxiliary methods for evaluating visible energies
 JVoid.hh
 JVolume.hh
 JVolume1D.ccExample program to histogram neutrino effective volume for triggered events
 JVolume1D.sh
 JWeight.hh
 JWhereIs.ccExample program to test JNET::JControlHost::WhereIs
 JWhiteSpacesFacet.ccExample program to test JLANG::JWhiteSpacesFacet class
 JWhiteSpacesFacet.hh
 JWhiteSpacesFacet.sh
 JWriteOscParametersGrid.cc
 JWriterObjectOutput.hh
 JXRootd.sh
 JZebraMantis.ccProgram to compare histograms in root files that have same directory structure,
and where the histograms have the same names
 JZero.ccExample program to test zero values (JMATH::zero)
 JZero.hhDefinition of zero value for any class
 km3_toa_finder.cc
 km3_toa_signal.cc
 km3_toa_toainfo.cc
 km3_toa_utils.cc
 KM3NeT.hhProperties of KM3NeT PMT and deep-sea water
 KM3NeT2D.hhProperties of KM3NeT PMT and deep-sea water
 KM3NeT_Acoustic_Link.cc
 KM3NeT_Acoustic_Link.h
 KM3NeT_Audio_Channel.cc
 KM3NeT_Audio_Channel.h
 KM3NeT_Audio_Data.cc
 KM3NeT_Audio_Data.h
 KM3NeT_Debug.cc
 KM3NeT_Debug.h
 KM3NeT_DOM.cc
 KM3NeT_DOM.h
 ligier_helper.cpp
 software/JAAnet/LinkDef.hh
 software/JAcoustics/LinkDef.hh
 software/JCompass/LinkDef.hh
 software/JDB/LinkDef.hh
 software/JMarkov/LinkDef.hh
 software/JReconstruction/LinkDef.hh
 software/JRunAnalyzer/LinkDef.hh
 software/JTrigger/LinkDef.hh
 externals/km3net-dataformat/src/LinkDef.hh
 externals/antares-dataformat/LinkDef.hh
 log.cc
 log.hh
 Main.cc
 make_movie.sh
 makedeclinationtable.py
 makedeclinationtable.sh
 mechanics:plot.sh
 mechanics:run.sh
 mkqueue.sh
 module-Z:fit.sh
 module-Z:plot.sh
 module-Z:run.sh
 module_status.hh
 module_status.py
 module_status.sh
 monrouter.cpp
 multi-plotk40.sh
 MultiHead.cc
 MultiHead.hh
 multiplicity.hh
 PhysicsEvent.cc
 PhysicsEvent.hh
 plot-acoustics-fit.sh
 plot-Ballarat.sh
 plot-BPS.sh
 software/JAcoustics/plot-canberra.sh
 examples/JAcoustics/plot-canberra.sh
 plot-compass.sh
 plot-DetectorParameters2D.sh
 plot-Domino.sh
 plot-EDFA.sh
 plot-equalizer.sh
 plot-height.sh
 plot-hobbit.sh
 plot-katoomba.sh
 plot-orientation.sh
 plot-perth.sh
 JDB/plot-PMTParameters.sh
 JDetector/plot-PMTParameters.sh
 plot-PMTParameters1D.sh
 plot-PMTParameters2D.sh
 plot-position.sh
 plot-Sirene.sh
 plot-time.sh
 plot-Tuna.sh
 plot-waveforms.sh
 pmt_status.hh
 pmt_status.py
 pmt_status.sh
 post-calibration_D0ARCA009.sh
 post-calibration_D0ARCA021.sh
 pre-calibration.sh
 pre-calibration_D0ARCA006.sh
 pre-calibration_D0ARCA009.sh
 pre-calibration_D0ARCA020.sh
 pre-calibration_D0ARCA021.sh
 pre-calibration_D0ARCA028.sh
 pre-calibration_D0ORCA007.sh
 pre-calibration_D0ORCA010.sh
 pre-calibration_D0ORCA011.sh
 pre-calibration_D0ORCA015.sh
 pre-calibration_D0ORCA018.sh
 pre-calibration_D1ORCA011.sh
 pre-calibration_D1ORCA013.sh
 pre-calibration_D1ORCA015.sh
 pre-calibration_D_ORCA006.sh
 print.cpp
 ptr_dispatcher.hh
 putFile.sh
 puzzled_frame.cc
 puzzled_frame.hh
 pythia.hhThis file contains converted Fortran code from km3
 software/JDataQuality/qaqc.sh
 examples/JDataQuality/qaqc.sh
 qlib.csh
 qlib.sh
 raw_data_converter.cpp
 readEvtFile.cc
 recipient.hh
 recipients_handler.cc
 recipients_handler.hh
 definitions/reconstruction.hh
 tools/reconstruction.hhAuxiliary methods for selection of reconstructed tracks
 reconstruction.py
 reconstruction.sh
 regex.h
 rename.ccRename file
 root.hh
 root.py
 root.sh
 run_tests.py
 saDataQueue.cc
 seaTimeCalibration.sh
 setenv.sh
 sftpget.zsh
 sftpput.zsh
 SN_timecalib.sh
 sound-V:fit.sh
 sound-V:run.sh
 sound-velocity.sh
 strlcpy.cc
 strlcpy.h
 test-PMTParameters.sh
 test-Tuna.sh
 test-tuna.sh
 test_head.py
 testk40.sh
 testToT.sh
 thresholdCalibration.sh
 time_converter.hhAuxiliary include file for time conversion between DAQ/trigger hit and Monte Carlo hit
 time_tracking.hh
 timer.cc
 timer.hh
 TimeSlice.cc
 TimeSlice.hh
 Timestamp.hh
 toashort_monitor.sh
 tridas.sh
 trigger.hh
 trigger.py
 trigger.sh
 tripod-XY:fit.sh
 tripod-XY:plot.sh
 tripod-XY:run.sh
 tripod-Z:fit.sh
 tripod-Z:plot.sh
 tripod-Z:run.sh
 Trk.hh
 trkmembers.hh
 trkmembers.py
 trkmembers.sh
 ulib.csh
 ulib.sh
 ulonglong.hh
 UNESCO.ccExample program to plot UNESCO sound velocity
 UNESCO.sh
 utctime.hh
 Vec.hh
 w2list_genhen.hh
 w2list_genhen.py
 w2list_genhen.sh
 w2list_gseagen.hh
 w2list_gseagen.py
 w2list_gseagen.sh
 w2list_km3buu.hh
 w2list_km3buu.py
 w2list_km3buu.sh
 weightlist.hh
 weightlist.py
 weightlist.sh
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